Strain Fitness in Sphingobium sp. HT1-2 around GFF2816

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,856,108	-				+0.4
2,856,119	-				-0.0
2,856,126	-				-0.8
2,856,131	-				-0.7
2,856,156	-				-0.1
2,856,161	-				-0.3
2,856,172	-				-0.5
2,856,198	+		GFF2815	0.12	+1.0
2,856,198	+		GFF2815	0.12	-1.5
2,856,198	+		GFF2815	0.12	+0.5
2,856,206	-		GFF2815	0.13	-0.8
2,856,206	-		GFF2815	0.13	-0.5
2,856,232	+		GFF2815	0.16	-1.2
2,856,240	-		GFF2815	0.17	-1.7
2,856,240	-		GFF2815	0.17	+1.1
2,856,240	-		GFF2815	0.17	-0.3
2,856,240	-		GFF2815	0.17	-0.4
2,856,240	-		GFF2815	0.17	+0.7
2,856,240	-		GFF2815	0.17	+0.6
2,856,246	-		GFF2815	0.17	-0.7
2,856,247	-		GFF2815	0.17	+0.1
2,856,247	-		GFF2815	0.17	+0.3
2,856,279	-		GFF2815	0.21	+0.1
2,856,303	+		GFF2815	0.23	-1.5
2,856,310	+		GFF2815	0.24	-0.2
2,856,310	+		GFF2815	0.24	-0.7
2,856,318	-		GFF2815	0.25	+1.0
2,856,318	-		GFF2815	0.25	+0.8
2,856,318	-		GFF2815	0.25	+0.8
2,856,318	-		GFF2815	0.25	+0.3
2,856,318	-		GFF2815	0.25	+1.0
2,856,335	-		GFF2815	0.27	-0.2
2,856,350	-		GFF2815	0.29	+0.6
2,856,454	+		GFF2815	0.40	+0.6
2,856,458	+		GFF2815	0.40	-0.3
2,856,458	+		GFF2815	0.40	+0.6
2,856,466	-		GFF2815	0.41	+0.8
2,856,485	+		GFF2815	0.43	-1.4
2,856,517	+		GFF2815	0.47	-0.9
2,856,633	+		GFF2815	0.60	+1.8
2,856,665	-		GFF2815	0.63	+0.8
2,856,669	+		GFF2815	0.64	+1.4
2,856,669	+		GFF2815	0.64	-1.0
2,856,679	+		GFF2815	0.65	-0.3
2,856,679	+		GFF2815	0.65	+1.6
2,856,681	+		GFF2815	0.65	-1.3
2,856,681	+		GFF2815	0.65	-0.7
2,856,681	+		GFF2815	0.65	-0.5
2,856,735	-		GFF2815	0.71	-0.3
2,856,744	-		GFF2815	0.72	-0.5
2,856,784	-		GFF2815	0.76	-2.3
2,856,806	+		GFF2815	0.79	-0.9
2,856,806	+		GFF2815	0.79	+0.8
2,856,806	+		GFF2815	0.79	+0.2
2,856,814	-		GFF2815	0.80	+0.2
2,856,814	-		GFF2815	0.80	-1.3
2,856,819	-		GFF2815	0.80	+1.0
2,856,848	+		GFF2815	0.83	-0.8
2,856,848	+		GFF2815	0.83	-0.5
2,856,856	-		GFF2815	0.84	-2.1
2,856,912	-				-1.5
2,856,913	-				+0.4
2,856,923	+				-0.8
2,856,975	+				+1.0
2,856,975	+				-0.3
2,856,983	-				+0.8
2,857,002	+				-1.6
2,857,020	+				+0.8
2,857,020	+				+0.1
2,857,020	+				-0.1
2,857,028	-				-0.0
2,857,080	-				-1.4
2,857,080	-				+1.5
2,857,080	-				+0.6
2,857,098	-				-0.4
2,857,098	-				-0.5
2,857,098	-				-1.4
2,857,121	+				+1.2
2,857,121	+				-0.4
2,857,121	+				+0.3
2,857,121	+				-1.7
2,857,121	+				-0.7
2,857,121	+				+0.8
2,857,121	+				-0.4
2,857,129	-				-0.6
2,857,129	-				+0.3
2,857,129	-				-0.2
2,857,129	-				+1.0
2,857,129	-				-0.6
2,857,129	-				-2.0
2,857,129	-				-1.6
2,857,129	-				-0.5
2,857,129	-				+0.3
2,857,131	+				-0.9
2,857,134	-				+0.4
2,857,139	-				-1.4
2,857,144	-				-0.6
2,857,150	-				-2.6
2,857,151	-				-0.3
2,857,157	+				-0.3
2,857,161	+				-1.3
2,857,165	-		GFF2816	0.10	-1.1
2,857,169	-		GFF2816	0.11	-0.9
2,857,169	-		GFF2816	0.11	-0.8
2,857,195	-		GFF2816	0.14	-1.1
2,857,214	-		GFF2816	0.17	-0.2
2,857,241	+		GFF2816	0.20	-1.2
2,857,261	+		GFF2816	0.23	-0.2
2,857,261	+		GFF2816	0.23	-1.8
2,857,262	+		GFF2816	0.23	+0.1
2,857,262	+		GFF2816	0.23	+0.5
2,857,269	-		GFF2816	0.24	+0.5
2,857,364	-		GFF2816	0.37	+0.2
2,857,369	-		GFF2816	0.38	-0.3
2,857,374	-		GFF2816	0.39	+0.6
2,857,433	-		GFF2816	0.47	-1.5
2,857,436	-		GFF2816	0.47	-0.7
2,857,436	-		GFF2816	0.47	+2.7
2,857,443	+		GFF2816	0.48	-1.6
2,857,443	+		GFF2816	0.48	+0.5
2,857,451	-		GFF2816	0.49	-0.2
2,857,451	-		GFF2816	0.49	-0.5
2,857,469	+		GFF2816	0.52	-1.0
2,857,478	+		GFF2816	0.53	-0.2
2,857,500	+		GFF2816	0.56	+0.5
2,857,508	-		GFF2816	0.57	-1.7
2,857,508	-		GFF2816	0.57	-0.6
2,857,508	-		GFF2816	0.57	+0.6
2,857,547	-		GFF2816	0.62	+1.1
2,857,624	+		GFF2816	0.73	+0.1
2,857,627	+		GFF2816	0.73	-1.0
2,857,645	-		GFF2816	0.76	-1.6
2,857,645	-		GFF2816	0.76	-2.2
2,857,684	-		GFF2816	0.81	-0.0
2,857,699	+		GFF2816	0.83	-0.2
2,857,707	-		GFF2816	0.84	-1.2
2,857,727	+		GFF2816	0.87	-0.3
2,857,727	+		GFF2816	0.87	-0.5
2,857,735	-		GFF2816	0.88	-1.5
2,857,744	+		GFF2816	0.89	-0.3
2,857,747	+		GFF2816	0.90	+0.3
2,857,754	+				+0.3
2,857,762	-				-1.7
2,857,793	+				-0.9
2,857,799	+				+2.1
2,857,799	+				-0.7
2,857,810	-				-0.0
2,857,813	-				-0.3
2,857,824	+				-0.7
2,857,824	+				-1.9
2,857,832	-				-0.2
2,857,832	-				+0.4
2,857,838	-				+0.4
2,857,846	+				-1.3
2,857,849	-				-0.4
2,857,850	+				-0.5
2,857,850	+				+0.0
2,857,850	+				+0.1
2,857,850	+				+0.8
2,857,850	+				+0.6
2,857,854	-				+1.1
2,857,858	-				-1.8
2,857,858	-				+0.8
2,857,875	-				-0.4
2,857,888	+				-0.2
2,857,889	+				-0.5
2,857,899	+				-2.5
2,857,899	+				-1.0
2,857,899	+				+0.4
2,857,907	-				-0.2
2,857,925	+				-0.4
2,857,934	+				+0.0
2,857,943	+		GFF2817	0.10	-0.6
2,857,943	+		GFF2817	0.10	+0.8
2,857,951	-		GFF2817	0.11	-1.2
2,857,951	-		GFF2817	0.11	-0.9
2,857,951	-		GFF2817	0.11	+0.5
2,857,956	-		GFF2817	0.11	+0.1
2,857,987	+		GFF2817	0.14	-0.6
2,858,005	+		GFF2817	0.15	-2.0
2,858,005	-		GFF2817	0.15	-1.0
2,858,045	-		GFF2817	0.18	+0.2
2,858,067	+		GFF2817	0.20	-0.7
2,858,080	-		GFF2817	0.21	-1.2
2,858,103	-		GFF2817	0.23	+1.5
2,858,103	-		GFF2817	0.23	+0.6
2,858,127	-		GFF2817	0.25	+1.2
2,858,167	+		GFF2817	0.28	-0.0
2,858,174	-		GFF2817	0.29	-0.2
2,858,180	-		GFF2817	0.29	+0.8
2,858,183	-		GFF2817	0.29	+1.4
2,858,188	-		GFF2817	0.30	+0.4
2,858,208	+		GFF2817	0.31	-2.1
2,858,208	+		GFF2817	0.31	-2.7
2,858,208	+		GFF2817	0.31	+0.4
2,858,208	+		GFF2817	0.31	+0.1
2,858,208	+		GFF2817	0.31	+0.7
2,858,208	+		GFF2817	0.31	-0.4
2,858,208	+		GFF2817	0.31	+0.4
2,858,208	+		GFF2817	0.31	+0.0
2,858,208	+		GFF2817	0.31	-2.5
2,858,208	+		GFF2817	0.31	-1.3
2,858,208	+		GFF2817	0.31	+1.5
2,858,216	-		GFF2817	0.32	-0.8
2,858,216	-		GFF2817	0.32	+1.5
2,858,216	-		GFF2817	0.32	-0.2
2,858,216	-		GFF2817	0.32	-2.0
2,858,216	-		GFF2817	0.32	-1.2
2,858,216	-		GFF2817	0.32	-1.5
2,858,216	-		GFF2817	0.32	-1.8
2,858,216	-		GFF2817	0.32	-1.2
2,858,216	-		GFF2817	0.32	+1.3
2,858,220	-		GFF2817	0.32	+0.8
2,858,231	+		GFF2817	0.33	-1.9
2,858,275	-		GFF2817	0.37	+0.1
2,858,286	+		GFF2817	0.38	+0.8
2,858,403	-		GFF2817	0.47	+1.0
2,858,417	+		GFF2817	0.48	+0.2
2,858,417	+		GFF2817	0.48	-1.1
2,858,417	+		GFF2817	0.48	+0.5
2,858,417	+		GFF2817	0.48	+0.6
2,858,417	+		GFF2817	0.48	+0.4
2,858,418	-		GFF2817	0.48	-0.1
2,858,425	-		GFF2817	0.49	-1.3
2,858,425	-		GFF2817	0.49	-0.4
2,858,425	-		GFF2817	0.49	-0.5
2,858,425	-		GFF2817	0.49	-0.4
2,858,471	-		GFF2817	0.53	+1.8
2,858,528	+		GFF2817	0.57	-0.8
2,858,531	-		GFF2817	0.57	-1.0
2,858,533	+		GFF2817	0.58	+3.4
2,858,541	-		GFF2817	0.58	-0.4
2,858,547	+		GFF2817	0.59	+0.4
2,858,547	+		GFF2817	0.59	+0.8
2,858,567	-		GFF2817	0.60	-1.6
2,858,577	-		GFF2817	0.61	-1.8
2,858,589	-		GFF2817	0.62	-1.5
2,858,603	+		GFF2817	0.63	-0.4
2,858,645	+		GFF2817	0.67	-1.2
2,858,645	+		GFF2817	0.67	-0.8
2,858,645	+		GFF2817	0.67	-0.7
2,858,653	-		GFF2817	0.67	-1.1
2,858,653	-		GFF2817	0.67	+2.0
2,858,713	-		GFF2817	0.72	-1.8
2,858,738	-		GFF2817	0.74	+1.3
2,858,748	-		GFF2817	0.75	+1.6
2,858,751	-		GFF2817	0.75	+0.7
2,858,754	+		GFF2817	0.75	-0.5
2,858,762	+		GFF2817	0.76	-0.8
2,858,770	-		GFF2817	0.77	+3.0
2,858,789	-		GFF2817	0.78	+0.5
2,858,799	-		GFF2817	0.79	+0.2