Strain Fitness in Sphingobium sp. HT1-2 around GFF2769

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,801,176	+		GFF2768	0.28	-1.4
2,801,176	+		GFF2768	0.28	-1.5
2,801,184	-		GFF2768	0.28	-0.4
2,801,194	-		GFF2768	0.29	-0.5
2,801,198	+		GFF2768	0.29	-1.8
2,801,198	+		GFF2768	0.29	-1.1
2,801,198	+		GFF2768	0.29	-0.5
2,801,206	-		GFF2768	0.30	-0.4
2,801,206	-		GFF2768	0.30	+1.3
2,801,206	-		GFF2768	0.30	-1.2
2,801,206	-		GFF2768	0.30	-0.4
2,801,206	-		GFF2768	0.30	-0.2
2,801,206	-		GFF2768	0.30	+0.5
2,801,263	-		GFF2768	0.35	+0.4
2,801,278	+		GFF2768	0.36	-0.7
2,801,288	-		GFF2768	0.37	+0.1
2,801,290	+		GFF2768	0.37	+0.3
2,801,303	-		GFF2768	0.38	+0.1
2,801,311	-		GFF2768	0.39	+0.2
2,801,322	+		GFF2768	0.40	+0.6
2,801,334	+		GFF2768	0.41	-2.7
2,801,347	-		GFF2768	0.42	-0.3
2,801,350	+		GFF2768	0.42	+0.6
2,801,350	+		GFF2768	0.42	+0.5
2,801,355	+		GFF2768	0.43	-0.7
2,801,368	-		GFF2768	0.44	-0.8
2,801,375	+		GFF2768	0.44	-1.2
2,801,375	+		GFF2768	0.44	-0.8
2,801,378	-		GFF2768	0.45	-1.5
2,801,383	-		GFF2768	0.45	-0.4
2,801,385	+		GFF2768	0.45	-1.8
2,801,393	-		GFF2768	0.46	-1.1
2,801,414	+		GFF2768	0.48	-0.5
2,801,417	+		GFF2768	0.48	-0.9
2,801,417	+		GFF2768	0.48	-0.1
2,801,417	+		GFF2768	0.48	-2.6
2,801,422	+		GFF2768	0.48	-0.8
2,801,425	-		GFF2768	0.49	+0.3
2,801,428	-		GFF2768	0.49	-0.7
2,801,450	+		GFF2768	0.51	+0.8
2,801,458	-		GFF2768	0.51	-0.7
2,801,475	+		GFF2768	0.53	-0.9
2,801,475	+		GFF2768	0.53	-1.5
2,801,480	+		GFF2768	0.53	+1.8
2,801,480	+		GFF2768	0.53	-0.2
2,801,483	-		GFF2768	0.54	-1.3
2,801,483	-		GFF2768	0.54	-1.1
2,801,483	-		GFF2768	0.54	-1.5
2,801,485	+		GFF2768	0.54	-1.2
2,801,485	+		GFF2768	0.54	-0.2
2,801,488	-		GFF2768	0.54	+0.2
2,801,488	-		GFF2768	0.54	+0.2
2,801,505	+		GFF2768	0.55	+0.1
2,801,552	+		GFF2768	0.59	+0.2
2,801,552	+		GFF2768	0.59	-0.6
2,801,552	+		GFF2768	0.59	+0.3
2,801,562	-		GFF2768	0.60	+0.2
2,801,579	-		GFF2768	0.62	-2.5
2,801,587	-		GFF2768	0.62	-1.2
2,801,604	-		GFF2768	0.64	-0.5
2,801,612	-		GFF2768	0.64	+0.7
2,801,616	-		GFF2768	0.65	-0.1
2,801,625	+		GFF2768	0.66	-0.2
2,801,625	+		GFF2768	0.66	-0.3
2,801,626	-		GFF2768	0.66	-0.4
2,801,660	+		GFF2768	0.69	-0.8
2,801,665	+		GFF2768	0.69	-1.7
2,801,665	+		GFF2768	0.69	+1.2
2,801,668	-		GFF2768	0.69	-0.9
2,801,673	-		GFF2768	0.70	-1.5
2,801,681	-		GFF2768	0.70	-0.0
2,801,686	+		GFF2768	0.71	+0.1
2,801,690	+		GFF2768	0.71	+1.3
2,801,701	+		GFF2768	0.72	+1.3
2,801,701	+		GFF2768	0.72	-1.9
2,801,720	+		GFF2768	0.74	-1.0
2,801,720	+		GFF2768	0.74	-0.6
2,801,723	+		GFF2768	0.74	-0.5
2,801,723	-		GFF2768	0.74	-1.2
2,801,741	+		GFF2768	0.75	-0.4
2,801,746	+		GFF2768	0.76	-0.7
2,801,746	+		GFF2768	0.76	-0.4
2,801,746	+		GFF2768	0.76	-1.4
2,801,746	+		GFF2768	0.76	+0.5
2,801,754	-		GFF2768	0.76	-2.0
2,801,754	-		GFF2768	0.76	-1.2
2,801,754	-		GFF2768	0.76	-1.1
2,801,798	+		GFF2768	0.80	-0.1
2,801,799	-		GFF2768	0.80	+0.7
2,801,804	-		GFF2768	0.81	+0.3
2,801,816	+		GFF2768	0.82	-0.9
2,801,821	+		GFF2768	0.82	-0.5
2,801,824	-		GFF2768	0.82	-0.8
2,801,824	-		GFF2768	0.82	-1.3
2,801,824	-		GFF2768	0.82	+1.6
2,801,843	+		GFF2768	0.84	-0.3
2,801,850	+		GFF2768	0.85	-0.8
2,801,850	+		GFF2768	0.85	-0.3
2,801,850	+		GFF2768	0.85	+0.2
2,801,852	-		GFF2768	0.85	-0.1
2,801,854	+		GFF2768	0.85	-0.8
2,801,858	-		GFF2768	0.85	-0.8
2,801,892	+		GFF2768	0.88	-0.3
2,801,892	+		GFF2768	0.88	+0.5
2,801,893	-		GFF2768	0.88	-1.2
2,801,907	+		GFF2768	0.89	-0.6
2,801,912	+		GFF2768	0.90	-1.1
2,801,925	-				+1.0
2,801,962	+				-1.3
2,801,962	+				+1.0
2,801,962	+				-1.2
2,801,962	+				-1.1
2,801,962	+				-0.8
2,801,970	-				+0.6
2,801,970	-				-0.8
2,801,970	-				-0.0
2,801,970	-				-0.7
2,801,970	-				+0.9
2,801,976	+				-2.1
2,801,985	+				-1.3
2,801,990	+				-0.2
2,801,993	-				-0.8
2,801,993	-				+0.3
2,801,995	+				+0.2
2,802,001	+				-0.3
2,802,004	+				-1.2
2,802,009	-				-0.3
2,802,031	+				-1.3
2,802,067	+				+0.2
2,802,067	+				+0.8
2,802,076	-				-1.4
2,802,094	+				-1.2
2,802,096	+				+0.6
2,802,102	+				-1.3
2,802,127	+				-1.4
2,802,140	-				-1.4
2,802,145	-				-0.7
2,802,155	+				-1.7
2,802,155	+				+1.3
2,802,163	-				+0.0
2,802,163	-				+0.0
2,802,163	-				-1.4
2,802,163	-				-0.0
2,802,163	-				+0.8
2,802,163	-				-1.1
2,802,163	-				-0.9
2,802,165	+				+0.7
2,802,178	-				-1.3
2,802,222	+				-1.1
2,802,222	+				-0.8
2,802,222	+				-0.4
2,802,222	+				+0.9
2,802,228	-				-0.6
2,802,229	-				-0.1
2,802,230	-				-0.9
2,802,230	-				+0.3
2,802,230	-				-0.7
2,802,232	+				-0.5
2,802,232	+				-0.3
2,802,240	-				-1.0
2,802,240	-				+0.1
2,802,240	-				-0.4
2,802,240	-				+0.2
2,802,268	+				-0.2
2,802,268	+				-0.7
2,802,276	-				-0.1
2,802,294	+		GFF2769	0.10	-0.2
2,802,309	+		GFF2769	0.11	+0.8
2,802,317	+		GFF2769	0.12	-0.4
2,802,319	+		GFF2769	0.12	-0.8
2,802,355	+		GFF2769	0.15	-0.5
2,802,400	+		GFF2769	0.19	-2.1
2,802,406	-		GFF2769	0.20	+0.0
2,802,410	+		GFF2769	0.20	-0.0
2,802,441	-		GFF2769	0.22	-1.8
2,802,492	-		GFF2769	0.27	+1.2
2,802,492	-		GFF2769	0.27	-1.8
2,802,506	+		GFF2769	0.28	+0.7
2,802,506	+		GFF2769	0.28	-0.7
2,802,506	+		GFF2769	0.28	-1.1
2,802,510	+		GFF2769	0.28	+0.2
2,802,511	+		GFF2769	0.28	-0.8
2,802,514	-		GFF2769	0.29	-0.2
2,802,514	-		GFF2769	0.29	+0.2
2,802,519	-		GFF2769	0.29	+0.2
2,802,540	+		GFF2769	0.31	+1.0
2,802,540	+		GFF2769	0.31	+0.5
2,802,548	-		GFF2769	0.32	+2.0
2,802,548	-		GFF2769	0.32	-1.2
2,802,578	+		GFF2769	0.34	-1.5
2,802,581	-		GFF2769	0.34	-1.8
2,802,581	-		GFF2769	0.34	-0.7
2,802,622	+		GFF2769	0.38	+1.0
2,802,630	-		GFF2769	0.39	+0.7
2,802,632	+		GFF2769	0.39	+0.3
2,802,664	+		GFF2769	0.41	-0.1
2,802,680	-		GFF2769	0.43	+0.5
2,802,688	+		GFF2769	0.43	+1.2
2,802,696	-		GFF2769	0.44	-0.8
2,802,713	+		GFF2769	0.46	+0.3
2,802,713	+		GFF2769	0.46	-0.5
2,802,713	+		GFF2769	0.46	-0.8
2,802,715	-		GFF2769	0.46	-1.0
2,802,721	-		GFF2769	0.46	-2.1
2,802,721	-		GFF2769	0.46	-1.8
2,802,797	-		GFF2769	0.53	+0.2
2,802,816	+		GFF2769	0.54	+0.8
2,802,833	+		GFF2769	0.56	-0.7
2,802,884	-		GFF2769	0.60	-1.9
2,802,910	+		GFF2769	0.62	+0.6
2,802,915	+		GFF2769	0.63	-0.8
2,802,918	-		GFF2769	0.63	-0.8
2,802,925	+		GFF2769	0.64	-1.6
2,802,925	+		GFF2769	0.64	-1.8
2,802,925	+		GFF2769	0.64	-0.7
2,802,925	+		GFF2769	0.64	-1.0
2,802,925	+		GFF2769	0.64	-0.4
2,802,925	+		GFF2769	0.64	-0.5
2,802,925	+		GFF2769	0.64	-0.0
2,802,925	+		GFF2769	0.64	+0.1
2,802,925	+		GFF2769	0.64	-1.0
2,802,925	+		GFF2769	0.64	-2.2
2,802,925	+		GFF2769	0.64	-2.1
2,802,925	+		GFF2769	0.64	-1.6
2,802,925	+		GFF2769	0.64	-0.7
2,802,925	+		GFF2769	0.64	-0.7
2,802,928	-		GFF2769	0.64	-0.5
2,802,933	-		GFF2769	0.64	-0.8
2,802,933	-		GFF2769	0.64	-0.8
2,802,933	-		GFF2769	0.64	-1.6
2,802,933	-		GFF2769	0.64	-1.2
2,802,933	-		GFF2769	0.64	-1.3
2,802,933	-		GFF2769	0.64	-0.0
2,802,933	-		GFF2769	0.64	-0.5
2,802,933	-		GFF2769	0.64	+0.5
2,802,933	-		GFF2769	0.64	+0.9
2,802,933	-		GFF2769	0.64	-1.3
2,802,933	-		GFF2769	0.64	+0.6
2,802,933	-		GFF2769	0.64	-1.6
2,802,933	-		GFF2769	0.64	-0.2
2,802,933	-		GFF2769	0.64	-2.7
2,802,933	-		GFF2769	0.64	-0.4
2,802,933	-		GFF2769	0.64	-0.7
2,802,933	-		GFF2769	0.64	-0.8
2,802,933	-		GFF2769	0.64	-1.0
2,802,938	-		GFF2769	0.65	-1.4
2,802,940	+		GFF2769	0.65	-1.7
2,802,946	-		GFF2769	0.65	+0.2
2,802,948	-		GFF2769	0.65	+0.7
2,802,948	-		GFF2769	0.65	-0.5
2,802,950	+		GFF2769	0.66	+1.2
2,802,958	-		GFF2769	0.66	+0.3
2,802,963	-		GFF2769	0.67	-0.4
2,802,970	+		GFF2769	0.67	-0.2
2,802,972	+		GFF2769	0.68	-1.7
2,802,994	+		GFF2769	0.69	-0.8
2,802,994	+		GFF2769	0.69	-0.8
2,803,004	+		GFF2769	0.70	+0.3
2,803,004	+		GFF2769	0.70	-1.4
2,803,012	-		GFF2769	0.71	-0.8
2,803,022	+		GFF2769	0.72	-1.2
2,803,056	+		GFF2769	0.75	-0.4
2,803,058	+		GFF2769	0.75	-0.4
2,803,058	+		GFF2769	0.75	-1.3
2,803,058	+		GFF2769	0.75	-1.2
2,803,058	+		GFF2769	0.75	-1.9
2,803,058	+		GFF2769	0.75	-0.2
2,803,058	+		GFF2769	0.75	-0.5
2,803,066	-		GFF2769	0.75	-1.5
2,803,066	-		GFF2769	0.75	-1.2
2,803,066	-		GFF2769	0.75	-0.9
2,803,066	-		GFF2769	0.75	-0.1
2,803,066	-		GFF2769	0.75	-1.2
2,803,066	-		GFF2769	0.75	-0.8
2,803,111	-		GFF2769	0.79	+0.7
2,803,134	-		GFF2769	0.81	-1.3
2,803,139	+		GFF2769	0.82	+0.3
2,803,139	-		GFF2769	0.82	-0.3
2,803,160	+		GFF2769	0.83	-1.4
2,803,173	-		GFF2769	0.85	-0.6
2,803,175	-		GFF2769	0.85	+0.8
2,803,180	-		GFF2769	0.85	+0.7
2,803,180	-		GFF2769	0.85	-1.2
2,803,193	-		GFF2769	0.86	+0.1
2,803,206	+		GFF2769	0.87	-1.0
2,803,214	-		GFF2769	0.88	+0.1
2,803,258	+				-1.3
2,803,271	-				-0.3
2,803,273	-				-0.4
2,803,305	+				+1.9
2,803,313	-				-1.2
2,803,348	+				+1.7
2,803,348	+				+0.2
2,803,348	+				+0.9
2,803,348	+				-0.2
2,803,348	+				-0.4
2,803,348	+				-0.0
2,803,353	-				+0.7
2,803,356	-				-1.5
2,803,356	-				-0.5
2,803,356	-				+0.4
2,803,356	-				-0.8
2,803,356	-				-1.1
2,803,356	-				-1.2
2,803,356	-				-0.8
2,803,406	+				-0.9
2,803,406	+				-0.8
2,803,406	+				-0.9
2,803,406	+				-0.8
2,803,406	+				-0.1
2,803,406	+				-2.0
2,803,413	-		GFF2770	0.10	-0.7
2,803,414	-		GFF2770	0.11	-0.9
2,803,414	-		GFF2770	0.11	+0.2
2,803,414	-		GFF2770	0.11	-0.3
2,803,430	+		GFF2770	0.14	-0.3
2,803,430	+		GFF2770	0.14	+0.5
2,803,430	+		GFF2770	0.14	-0.8
2,803,438	-		GFF2770	0.15	+1.1
2,803,438	-		GFF2770	0.15	-0.7
2,803,461	-		GFF2770	0.19	+0.1
2,803,485	+		GFF2770	0.24	-0.8
2,803,495	+		GFF2770	0.26	-1.3
2,803,509	-		GFF2770	0.28	+0.5
2,803,511	+		GFF2770	0.29	-0.5
2,803,555	+		GFF2770	0.37	-1.4
2,803,565	+		GFF2770	0.39	-0.0
2,803,565	+		GFF2770	0.39	-0.5
2,803,565	+		GFF2770	0.39	-2.2
2,803,565	+		GFF2770	0.39	-1.5
2,803,565	+		GFF2770	0.39	-0.5
2,803,573	-		GFF2770	0.40	-1.5
2,803,573	-		GFF2770	0.40	-0.9
2,803,582	+		GFF2770	0.42	-0.9
2,803,584	-		GFF2770	0.43	-1.2
2,803,601	+		GFF2770	0.46	+1.2
2,803,602	+		GFF2770	0.46	-0.0
2,803,610	-		GFF2770	0.47	+1.2
2,803,637	-		GFF2770	0.52	-0.8
2,803,637	-		GFF2770	0.52	-0.6
2,803,652	+		GFF2770	0.55	-0.7
2,803,652	+		GFF2770	0.55	+0.2
2,803,652	+		GFF2770	0.55	-0.1
2,803,652	+		GFF2770	0.55	-0.1
2,803,652	+		GFF2770	0.55	+0.6
2,803,660	-		GFF2770	0.57	-0.5
2,803,676	+		GFF2770	0.60	+0.5
2,803,676	+		GFF2770	0.60	+0.8
2,803,676	+		GFF2770	0.60	-0.5
2,803,676	-		GFF2770	0.60	-0.3
2,803,684	-		GFF2770	0.61	-0.7
2,803,694	-		GFF2770	0.63	-1.8
2,803,703	+		GFF2770	0.65	-1.9
2,803,708	-		GFF2770	0.66	-0.3
2,803,738	-		GFF2770	0.71	-0.5
2,803,760	+		GFF2770	0.75	+0.9
2,803,785	-		GFF2770	0.80	-0.8
2,803,785	-		GFF2770	0.80	-0.8
2,803,785	-		GFF2770	0.80	-2.2
2,803,785	-		GFF2770	0.80	-1.3
2,803,785	-		GFF2770	0.80	+0.8
2,803,785	-		GFF2770	0.80	-1.4
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