Strain Fitness in Sphingobium sp. HT1-2 around GFF267

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF265 and GFF266 are separated by 19 nucleotidesGFF266 and GFF267 are separated by 86 nucleotidesGFF267 and GFF268 are separated by 174 nucleotides GFF265 - hypothetical protein, at 262,677 to 263,429 GFF265 GFF266 - hypothetical protein, at 263,449 to 263,685 GFF266 GFF267 - hypothetical protein, at 263,772 to 263,903 GFF267 GFF268 - hypothetical protein, at 264,078 to 264,533 GFF268 Position (kb) 263 264Strain fitness (log2 ratio) -2 -1 0 1 2 3at 262.867 kb on - strand, within GFF265at 262.890 kb on - strand, within GFF265at 262.890 kb on - strand, within GFF265at 262.909 kb on + strand, within GFF265at 262.910 kb on - strand, within GFF265at 262.968 kb on + strand, within GFF265at 262.976 kb on + strand, within GFF265at 262.994 kb on - strand, within GFF265at 263.022 kb on + strand, within GFF265at 263.023 kb on + strand, within GFF265at 263.053 kb on + strand, within GFF265at 263.098 kb on + strand, within GFF265at 263.118 kb on + strand, within GFF265at 263.131 kb on + strand, within GFF265at 263.161 kb on + strand, within GFF265at 263.161 kb on + strand, within GFF265at 263.161 kb on + strand, within GFF265at 263.169 kb on - strand, within GFF265at 263.186 kb on - strand, within GFF265at 263.186 kb on - strand, within GFF265at 263.186 kb on - strand, within GFF265at 263.294 kb on + strand, within GFF265at 263.294 kb on + strand, within GFF265at 263.323 kb on - strand, within GFF265at 263.324 kb on + strand, within GFF265at 263.329 kb on + strand, within GFF265at 263.337 kb on - strand, within GFF265at 263.337 kb on - strand, within GFF265at 263.337 kb on - strand, within GFF265at 263.372 kb on - strandat 263.389 kb on + strandat 263.394 kb on + strandat 263.399 kb on + strandat 263.422 kb on - strandat 263.424 kb on + strandat 263.446 kb on + strandat 263.470 kb on + strandat 263.470 kb on + strandat 263.478 kb on - strand, within GFF266at 263.478 kb on - strand, within GFF266at 263.478 kb on - strand, within GFF266at 263.485 kb on - strand, within GFF266at 263.509 kb on - strand, within GFF266at 263.525 kb on - strand, within GFF266at 263.562 kb on - strand, within GFF266at 263.568 kb on + strand, within GFF266at 263.574 kb on - strand, within GFF266at 263.581 kb on - strand, within GFF266at 263.592 kb on + strand, within GFF266at 263.600 kb on - strand, within GFF266at 263.600 kb on - strand, within GFF266at 263.615 kb on + strand, within GFF266at 263.615 kb on + strand, within GFF266at 263.623 kb on - strand, within GFF266at 263.623 kb on - strand, within GFF266at 263.628 kb on - strand, within GFF266at 263.643 kb on + strand, within GFF266at 263.643 kb on + strand, within GFF266at 263.643 kb on + strand, within GFF266at 263.649 kb on - strand, within GFF266at 263.692 kb on + strandat 263.695 kb on + strandat 263.695 kb on + strandat 263.700 kb on + strandat 263.703 kb on - strandat 263.703 kb on - strandat 263.703 kb on - strandat 263.741 kb on + strandat 263.750 kb on - strandat 263.750 kb on - strandat 263.755 kb on - strandat 263.760 kb on - strandat 263.783 kb on - strandat 263.819 kb on - strand, within GFF267at 263.887 kb on - strand, within GFF267at 263.889 kb on + strand, within GFF267at 263.902 kb on + strandat 263.909 kb on + strandat 263.910 kb on - strandat 263.910 kb on - strandat 263.919 kb on - strandat 263.940 kb on - strandat 263.940 kb on - strandat 263.983 kb on + strandat 263.996 kb on - strandat 264.108 kb on + strandat 264.129 kb on + strand, within GFF268at 264.141 kb on - strand, within GFF268at 264.187 kb on - strand, within GFF268at 264.213 kb on + strand, within GFF268at 264.275 kb on - strand, within GFF268at 264.286 kb on + strand, within GFF268at 264.294 kb on - strand, within GFF268at 264.308 kb on + strand, within GFF268at 264.374 kb on + strand, within GFF268at 264.421 kb on + strand, within GFF268at 264.421 kb on + strand, within GFF268at 264.426 kb on + strand, within GFF268at 264.429 kb on - strand, within GFF268at 264.436 kb on + strand, within GFF268at 264.497 kb on + strandat 264.535 kb on + strandat 264.577 kb on - strandat 264.656 kb on + strandat 264.656 kb on + strandat 264.676 kb on + strandat 264.821 kb on + strandat 264.870 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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262,867 - GFF265 0.25 +0.4
262,890 - GFF265 0.28 +0.9
262,890 - GFF265 0.28 -0.2
262,909 + GFF265 0.31 +0.7
262,910 - GFF265 0.31 +1.3
262,968 + GFF265 0.39 -1.5
262,976 + GFF265 0.40 +0.1
262,994 - GFF265 0.42 -0.5
263,022 + GFF265 0.46 +0.1
263,023 + GFF265 0.46 -1.2
263,053 + GFF265 0.50 +0.5
263,098 + GFF265 0.56 +0.9
263,118 + GFF265 0.59 +1.5
263,131 + GFF265 0.60 +2.9
263,161 + GFF265 0.64 -0.4
263,161 + GFF265 0.64 -0.6
263,161 + GFF265 0.64 +1.2
263,169 - GFF265 0.65 +0.0
263,186 - GFF265 0.68 -0.3
263,186 - GFF265 0.68 -1.2
263,186 - GFF265 0.68 +1.8
263,294 + GFF265 0.82 +0.9
263,294 + GFF265 0.82 -1.1
263,323 - GFF265 0.86 +1.5
263,324 + GFF265 0.86 -0.0
263,329 + GFF265 0.87 +0.3
263,337 - GFF265 0.88 -0.9
263,337 - GFF265 0.88 +0.8
263,337 - GFF265 0.88 +0.9
263,372 - +0.3
263,389 + +0.2
263,394 + -0.8
263,399 + -0.2
263,422 - -1.3
263,424 + -0.1
263,446 + +0.6
263,470 + -0.1
263,470 + +0.5
263,478 - GFF266 0.12 +0.9
263,478 - GFF266 0.12 -2.7
263,478 - GFF266 0.12 -0.1
263,485 - GFF266 0.15 +1.3
263,509 - GFF266 0.25 -0.3
263,525 - GFF266 0.32 -0.3
263,562 - GFF266 0.48 +0.4
263,568 + GFF266 0.50 -0.9
263,574 - GFF266 0.53 -0.4
263,581 - GFF266 0.56 +0.2
263,592 + GFF266 0.60 -0.7
263,600 - GFF266 0.64 +0.1
263,600 - GFF266 0.64 -1.0
263,615 + GFF266 0.70 -0.1
263,615 + GFF266 0.70 -0.3
263,623 - GFF266 0.73 +0.3
263,623 - GFF266 0.73 +0.7
263,628 - GFF266 0.76 -1.9
263,643 + GFF266 0.82 -0.4
263,643 + GFF266 0.82 +0.4
263,643 + GFF266 0.82 -1.4
263,649 - GFF266 0.84 -1.0
263,692 + +0.5
263,695 + +0.4
263,695 + +0.7
263,700 + +0.6
263,703 - -0.7
263,703 - -1.2
263,703 - -0.2
263,741 + +1.1
263,750 - +1.5
263,750 - -0.2
263,755 - -0.3
263,760 - +0.3
263,783 - +0.3
263,819 - GFF267 0.36 -0.5
263,887 - GFF267 0.87 -0.1
263,889 + GFF267 0.89 -0.1
263,902 + -0.8
263,909 + -0.5
263,910 - -0.4
263,910 - +0.2
263,919 - -1.3
263,940 - +0.0
263,940 - -0.8
263,983 + -0.3
263,996 - +0.8
264,108 + -2.1
264,129 + GFF268 0.11 -0.8
264,141 - GFF268 0.14 +1.6
264,187 - GFF268 0.24 -0.5
264,213 + GFF268 0.30 -0.2
264,275 - GFF268 0.43 -1.0
264,286 + GFF268 0.46 +0.2
264,294 - GFF268 0.47 +0.9
264,308 + GFF268 0.50 -0.1
264,374 + GFF268 0.65 -0.1
264,421 + GFF268 0.75 +1.3
264,421 + GFF268 0.75 +1.2
264,426 + GFF268 0.76 -0.4
264,429 - GFF268 0.77 -0.7
264,436 + GFF268 0.79 +0.2
264,497 + +1.2
264,535 + +0.4
264,577 - +1.3
264,656 + +0.5
264,656 + -1.8
264,676 + -0.2
264,821 + -0.2
264,870 + +2.3

Or see this region's nucleotide sequence