Strain Fitness in Sphingobium sp. HT1-2 around GFF2641

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,659,674	+		GFF2638	0.81	+0.2
2,659,687	+		GFF2638	0.82	-0.3
2,659,690	-		GFF2638	0.82	+0.5
2,659,712	+		GFF2638	0.83	+1.8
2,659,712	+		GFF2638	0.83	-0.2
2,659,712	+		GFF2638	0.83	+0.1
2,659,712	+		GFF2638	0.83	+0.4
2,659,712	+		GFF2638	0.83	-0.2
2,659,720	-		GFF2638	0.84	-0.2
2,659,720	-		GFF2638	0.84	+0.3
2,659,720	-		GFF2638	0.84	-0.9
2,659,720	-		GFF2638	0.84	+0.7
2,659,720	-		GFF2638	0.84	-0.9
2,659,728	+		GFF2638	0.84	-1.1
2,659,746	-		GFF2638	0.86	-1.1
2,659,751	+		GFF2638	0.86	+2.2
2,659,764	+		GFF2638	0.87	-0.6
2,659,794	-		GFF2638	0.89	+0.3
2,659,795	-		GFF2638	0.89	+0.2
2,659,799	-		GFF2638	0.89	-0.7
2,659,808	+		GFF2638	0.90	+2.5
2,659,861	+				+1.5
2,660,039	+				-0.3
2,660,044	+				+0.9
2,660,090	-		GFF2639	0.24	-0.8
2,660,090	-		GFF2639	0.24	-1.0
2,660,116	+		GFF2639	0.34	+0.2
2,660,124	-		GFF2639	0.37	-0.8
2,660,129	-		GFF2639	0.39	-1.7
2,660,129	-		GFF2639	0.39	+0.9
2,660,280	+				+1.1
2,660,280	+				+0.5
2,660,297	+				-1.0
2,660,339	+		GFF2640	0.22	-0.9
2,660,347	-		GFF2640	0.25	-1.1
2,660,347	-		GFF2640	0.25	-1.4
2,660,365	-		GFF2640	0.31	+0.3
2,660,391	-		GFF2640	0.39	-0.7
2,660,415	+		GFF2640	0.47	-2.0
2,660,434	-		GFF2640	0.54	+0.9
2,660,435	-		GFF2640	0.54	-0.3
2,660,435	-		GFF2640	0.54	-0.5
2,660,442	+		GFF2640	0.57	-0.3
2,660,445	-		GFF2640	0.58	-0.1
2,660,470	+		GFF2640	0.66	-2.1
2,660,483	+		GFF2640	0.70	+0.7
2,660,483	+		GFF2640	0.70	+3.1
2,660,492	+		GFF2640	0.73	-0.1
2,660,553	-				+1.3
2,660,558	-				-0.2
2,660,572	-				-1.2
2,660,579	-				-0.2
2,660,590	-				-0.3
2,660,673	-				+0.2
2,660,751	+				-0.9
2,660,757	+				+0.3
2,660,757	+				-0.3
2,660,757	+				-0.9
2,660,805	+		GFF2641	0.11	-1.2
2,660,810	-		GFF2641	0.11	-0.5
2,660,823	+		GFF2641	0.12	+1.5
2,660,828	+		GFF2641	0.13	+0.0
2,660,828	+		GFF2641	0.13	+0.2
2,660,828	+		GFF2641	0.13	-0.4
2,660,828	+		GFF2641	0.13	+0.1
2,660,836	-		GFF2641	0.13	-2.4
2,660,836	-		GFF2641	0.13	+0.5
2,660,868	+		GFF2641	0.16	+0.0
2,660,868	+		GFF2641	0.16	+0.6
2,660,876	-		GFF2641	0.16	+1.6
2,660,920	-		GFF2641	0.19	+0.7
2,660,921	-		GFF2641	0.19	-0.1
2,660,983	+		GFF2641	0.24	+0.1
2,660,983	-		GFF2641	0.24	+0.9
2,660,998	+		GFF2641	0.25	-0.5
2,661,012	+		GFF2641	0.26	+0.2
2,661,020	-		GFF2641	0.27	+0.8
2,661,020	-		GFF2641	0.27	-1.2
2,661,025	-		GFF2641	0.27	+0.1
2,661,027	+		GFF2641	0.27	+0.6
2,661,027	-		GFF2641	0.27	+0.7
2,661,030	-		GFF2641	0.27	+0.8
2,661,031	+		GFF2641	0.27	+0.5
2,661,031	+		GFF2641	0.27	-0.7
2,661,039	-		GFF2641	0.28	+0.0
2,661,044	+		GFF2641	0.28	-1.5
2,661,052	+		GFF2641	0.29	+0.5
2,661,060	-		GFF2641	0.30	-1.5
2,661,065	-		GFF2641	0.30	-1.4
2,661,075	+		GFF2641	0.31	+1.7
2,661,076	+		GFF2641	0.31	-0.9
2,661,076	+		GFF2641	0.31	-0.8
2,661,076	+		GFF2641	0.31	+0.5
2,661,091	+		GFF2641	0.32	+1.4
2,661,096	+		GFF2641	0.32	-0.5
2,661,099	-		GFF2641	0.32	-1.4
2,661,099	-		GFF2641	0.32	+2.2
2,661,103	+		GFF2641	0.33	-0.2
2,661,122	-		GFF2641	0.34	-0.7
2,661,125	+		GFF2641	0.34	-0.4
2,661,129	+		GFF2641	0.35	-0.2
2,661,133	-		GFF2641	0.35	+0.5
2,661,143	+		GFF2641	0.36	-0.4
2,661,168	+		GFF2641	0.37	-1.4
2,661,183	+		GFF2641	0.38	+2.5
2,661,183	+		GFF2641	0.38	+0.5
2,661,183	+		GFF2641	0.38	-1.1
2,661,191	-		GFF2641	0.39	+0.3
2,661,191	-		GFF2641	0.39	+0.6
2,661,191	-		GFF2641	0.39	-1.0
2,661,192	-		GFF2641	0.39	+0.2
2,661,195	-		GFF2641	0.39	-0.7
2,661,211	-		GFF2641	0.41	+0.2
2,661,213	+		GFF2641	0.41	-0.3
2,661,213	+		GFF2641	0.41	+0.3
2,661,221	-		GFF2641	0.41	+1.9
2,661,247	+		GFF2641	0.43	+0.3
2,661,247	+		GFF2641	0.43	-1.3
2,661,247	+		GFF2641	0.43	-2.1
2,661,247	+		GFF2641	0.43	-0.0
2,661,254	+		GFF2641	0.44	-0.3
2,661,255	-		GFF2641	0.44	-0.1
2,661,255	-		GFF2641	0.44	-1.3
2,661,255	-		GFF2641	0.44	-1.3
2,661,255	-		GFF2641	0.44	+0.3
2,661,265	+		GFF2641	0.44	-0.1
2,661,271	+		GFF2641	0.45	+0.8
2,661,279	-		GFF2641	0.45	-0.9
2,661,285	-		GFF2641	0.46	+1.6
2,661,292	-		GFF2641	0.46	-0.9
2,661,323	+		GFF2641	0.49	+0.6
2,661,334	+		GFF2641	0.49	-1.2
2,661,349	+		GFF2641	0.51	-0.1
2,661,357	-		GFF2641	0.51	+0.0
2,661,470	+		GFF2641	0.59	-0.9
2,661,534	+		GFF2641	0.64	-0.2
2,661,534	+		GFF2641	0.64	+0.3
2,661,534	+		GFF2641	0.64	-0.1
2,661,540	+		GFF2641	0.64	-0.7
2,661,542	-		GFF2641	0.65	-0.1
2,661,542	-		GFF2641	0.65	+0.2
2,661,545	+		GFF2641	0.65	-0.3
2,661,545	+		GFF2641	0.65	-0.0
2,661,564	+		GFF2641	0.66	-0.3
2,661,564	+		GFF2641	0.66	-1.3
2,661,564	+		GFF2641	0.66	+0.9
2,661,564	+		GFF2641	0.66	-0.8
2,661,566	+		GFF2641	0.66	-2.3
2,661,572	-		GFF2641	0.67	-1.6
2,661,574	+		GFF2641	0.67	-1.8
2,661,589	+		GFF2641	0.68	-2.6
2,661,594	+		GFF2641	0.68	-0.9
2,661,609	+		GFF2641	0.69	-1.1
2,661,617	-		GFF2641	0.70	-0.2
2,661,617	-		GFF2641	0.70	-0.9
2,661,617	-		GFF2641	0.70	-1.2
2,661,698	+		GFF2641	0.76	-2.0
2,661,706	-		GFF2641	0.76	-0.1
2,661,706	-		GFF2641	0.76	-0.9
2,661,721	-		GFF2641	0.78	+0.9
2,661,753	+		GFF2641	0.80	+0.1
2,661,761	-		GFF2641	0.80	-1.3
2,661,761	-		GFF2641	0.80	-1.2
2,661,761	-		GFF2641	0.80	+0.0
2,661,761	-		GFF2641	0.80	+0.2
2,661,783	+		GFF2641	0.82	-0.2
2,661,783	+		GFF2641	0.82	+0.1
2,661,783	+		GFF2641	0.82	+0.5
2,661,783	+		GFF2641	0.82	-1.2
2,661,784	+		GFF2641	0.82	-0.6
2,661,791	+		GFF2641	0.83	-1.0
2,661,791	-		GFF2641	0.83	+0.7
2,661,792	-		GFF2641	0.83	+1.2
2,661,822	-		GFF2641	0.85	-0.9
2,661,822	-		GFF2641	0.85	+0.2
2,661,883	+		GFF2641	0.89	+0.0
2,661,910	+				+0.3
2,661,910	+				+0.0
2,661,910	+				+0.2
2,661,913	-				-0.7
2,661,918	-				+0.3
2,661,919	+				-0.7
2,661,922	-				-0.1
2,661,927	-				-0.3
2,661,927	-				+0.4
2,661,927	-				-1.1
2,661,936	-				-1.1
2,661,941	-				+0.0
2,661,942	+				-2.0
2,661,975	-				-1.6
2,662,031	-				-0.4
2,662,038	-				-1.3
2,662,058	+				-1.0
2,662,061	-				+0.9
2,662,063	+				-1.9
2,662,073	-				-1.6
2,662,088	+				+0.2
2,662,090	+				-0.9
2,662,101	+				-0.9
2,662,106	+				+0.4
2,662,121	+				+0.9
2,662,135	-		GFF2642	0.10	-0.3
2,662,140	-		GFF2642	0.11	+1.0
2,662,140	-		GFF2642	0.11	+0.8
2,662,141	+		GFF2642	0.11	-0.5
2,662,141	+		GFF2642	0.11	-1.3
2,662,149	-		GFF2642	0.12	-0.4
2,662,180	+		GFF2642	0.15	+1.5
2,662,183	-		GFF2642	0.15	-2.3
2,662,193	-		GFF2642	0.16	+0.0
2,662,218	+		GFF2642	0.19	+0.9
2,662,221	-		GFF2642	0.19	+0.6
2,662,224	-		GFF2642	0.20	+0.0
2,662,224	-		GFF2642	0.20	+0.7
2,662,226	-		GFF2642	0.20	-1.2
2,662,226	-		GFF2642	0.20	+1.8
2,662,264	-		GFF2642	0.24	-1.0
2,662,310	+		GFF2642	0.28	-1.6
2,662,325	-		GFF2642	0.30	-0.6
2,662,384	-		GFF2642	0.36	-1.6
2,662,415	+		GFF2642	0.39	-0.5
2,662,438	+		GFF2642	0.41	-1.0
2,662,503	-		GFF2642	0.48	-0.4
2,662,505	-		GFF2642	0.48	-0.6
2,662,561	+		GFF2642	0.54	-1.7
2,662,593	-		GFF2642	0.57	+1.2
2,662,598	+		GFF2642	0.58	-0.8
2,662,606	-		GFF2642	0.59	+0.0
2,662,632	+		GFF2642	0.61	-1.4
2,662,634	-		GFF2642	0.61	+1.6
2,662,654	-		GFF2642	0.63	+0.8
2,662,656	-		GFF2642	0.64	+0.2
2,662,661	-		GFF2642	0.64	+0.9
2,662,661	-		GFF2642	0.64	-0.3
2,662,667	+		GFF2642	0.65	-0.2
2,662,677	-		GFF2642	0.66	+1.0
2,662,720	-		GFF2642	0.70	-0.5
2,662,791	+		GFF2642	0.77	+0.2
2,662,855	+		GFF2642	0.84	-1.1
2,662,860	+		GFF2642	0.84	-1.5
2,662,863	-		GFF2642	0.85	+0.3
2,662,868	-		GFF2642	0.85	-0.4
2,662,873	-		GFF2642	0.86	+0.0
2,662,880	+		GFF2642	0.86	+0.4
2,662,883	-		GFF2642	0.87	-0.3
2,662,888	-		GFF2642	0.87	-0.5