Strain Fitness in Sphingobium sp. HT1-2 around GFF2585

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,598,242	+		GFF2583	0.18	-1.0
2,598,250	-		GFF2583	0.18	-0.1
2,598,250	-		GFF2583	0.18	-0.4
2,598,284	+		GFF2583	0.22	+1.4
2,598,291	-		GFF2583	0.22	+0.8
2,598,312	+		GFF2583	0.24	+0.4
2,598,336	-		GFF2583	0.27	-1.0
2,598,349	-		GFF2583	0.28	+0.0
2,598,378	+		GFF2583	0.31	-0.9
2,598,386	-		GFF2583	0.31	-0.1
2,598,386	-		GFF2583	0.31	+0.5
2,598,399	+		GFF2583	0.33	+0.7
2,598,404	+		GFF2583	0.33	+1.0
2,598,404	+		GFF2583	0.33	-0.1
2,598,404	+		GFF2583	0.33	-0.8
2,598,406	+		GFF2583	0.33	-1.3
2,598,406	-		GFF2583	0.33	-1.8
2,598,412	-		GFF2583	0.34	-0.3
2,598,414	-		GFF2583	0.34	-0.3
2,598,414	-		GFF2583	0.34	-0.6
2,598,455	+		GFF2583	0.38	-0.7
2,598,486	+		GFF2583	0.41	+0.4
2,598,494	-		GFF2583	0.42	+0.4
2,598,501	-		GFF2583	0.42	-1.0
2,598,501	-		GFF2583	0.42	+0.6
2,598,522	-		GFF2583	0.44	-1.2
2,598,522	-		GFF2583	0.44	+0.1
2,598,543	+		GFF2583	0.46	-1.3
2,598,543	+		GFF2583	0.46	+0.3
2,598,554	+		GFF2583	0.48	-1.2
2,598,554	+		GFF2583	0.48	-1.4
2,598,554	+		GFF2583	0.48	-1.6
2,598,554	+		GFF2583	0.48	-1.4
2,598,554	+		GFF2583	0.48	-0.9
2,598,554	+		GFF2583	0.48	+0.6
2,598,554	+		GFF2583	0.48	-1.8
2,598,554	+		GFF2583	0.48	-1.7
2,598,554	+		GFF2583	0.48	-0.1
2,598,554	+		GFF2583	0.48	-2.7
2,598,554	+		GFF2583	0.48	-0.4
2,598,554	+		GFF2583	0.48	-1.0
2,598,554	+		GFF2583	0.48	-0.4
2,598,554	+		GFF2583	0.48	-0.7
2,598,554	+		GFF2583	0.48	+0.0
2,598,562	-		GFF2583	0.48	+0.0
2,598,562	-		GFF2583	0.48	-0.4
2,598,562	-		GFF2583	0.48	+0.6
2,598,562	-		GFF2583	0.48	-0.2
2,598,562	-		GFF2583	0.48	+0.4
2,598,562	-		GFF2583	0.48	+1.3
2,598,562	-		GFF2583	0.48	-0.3
2,598,562	-		GFF2583	0.48	-0.5
2,598,562	-		GFF2583	0.48	-0.7
2,598,562	-		GFF2583	0.48	-0.7
2,598,562	-		GFF2583	0.48	-2.1
2,598,579	+		GFF2583	0.50	-0.7
2,598,580	-		GFF2583	0.50	-0.1
2,598,580	-		GFF2583	0.50	+0.1
2,598,580	-		GFF2583	0.50	-1.0
2,598,602	-		GFF2583	0.52	-0.5
2,598,629	-		GFF2583	0.55	+0.1
2,598,644	+		GFF2583	0.56	+1.1
2,598,646	-		GFF2583	0.56	+1.2
2,598,651	+		GFF2583	0.57	-0.9
2,598,673	+		GFF2583	0.59	+1.9
2,598,677	+		GFF2583	0.59	-1.2
2,598,677	+		GFF2583	0.59	+0.5
2,598,685	-		GFF2583	0.60	-0.8
2,598,741	+		GFF2583	0.65	+0.4
2,598,746	+		GFF2583	0.66	-0.3
2,598,760	-		GFF2583	0.67	-1.7
2,598,762	+		GFF2583	0.67	-0.9
2,598,799	+		GFF2583	0.71	-0.8
2,598,804	+		GFF2583	0.71	+1.6
2,598,841	+		GFF2583	0.75	+1.2
2,598,842	+		GFF2583	0.75	-0.0
2,598,849	-		GFF2583	0.76	-1.5
2,598,849	-		GFF2583	0.76	-0.4
2,598,849	-		GFF2583	0.76	+1.4
2,598,873	-		GFF2583	0.78	-0.6
2,598,887	-		GFF2583	0.79	-0.8
2,598,917	-		GFF2583	0.82	-0.4
2,598,918	-		GFF2583	0.82	-0.4
2,598,924	-		GFF2583	0.83	+0.3
2,598,930	-		GFF2583	0.84	-0.6
2,598,944	+		GFF2583	0.85	-0.6
2,598,944	+		GFF2583	0.85	+2.0
2,598,952	-		GFF2583	0.86	+0.2
2,598,956	+		GFF2583	0.86	+0.1
2,598,962	-		GFF2583	0.87	+0.6
2,598,964	-		GFF2583	0.87	+0.1
2,598,964	-		GFF2583	0.87	-1.2
2,598,964	-		GFF2583	0.87	+0.0
2,598,978	-		GFF2583	0.88	-1.9
2,599,015	+				+0.8
2,599,018	-				-0.8
2,599,025	+				+0.3
2,599,060	+				+1.6
2,599,068	-				+0.6
2,599,094	-				-1.1
2,599,129	+		GFF2584	0.14	-0.5
2,599,131	+		GFF2584	0.16	-2.0
2,599,131	+		GFF2584	0.16	+0.0
2,599,139	-		GFF2584	0.22	-1.1
2,599,139	-		GFF2584	0.22	-1.6
2,599,139	-		GFF2584	0.22	+0.4
2,599,140	+		GFF2584	0.22	-0.5
2,599,147	-		GFF2584	0.28	-0.4
2,599,150	+		GFF2584	0.30	-0.6
2,599,158	+		GFF2584	0.36	-0.3
2,599,158	-		GFF2584	0.36	+0.3
2,599,158	-		GFF2584	0.36	-0.3
2,599,187	-		GFF2584	0.59	-0.9
2,599,205	+		GFF2584	0.73	-0.7
2,599,205	+		GFF2584	0.73	+0.0
2,599,205	+		GFF2584	0.73	-1.8
2,599,205	+		GFF2584	0.73	-2.1
2,599,213	-		GFF2584	0.79	-0.3
2,599,213	-		GFF2584	0.79	-1.8
2,599,218	-		GFF2584	0.83	-0.8
2,599,231	+				-1.6
2,599,231	+				+0.6
2,599,231	+				-0.1
2,599,231	+				-1.0
2,599,231	+				-0.9
2,599,231	+				-0.2
2,599,231	+				-0.6
2,599,231	+				-0.8
2,599,231	+				+0.1
2,599,231	+				-0.9
2,599,233	+				+0.1
2,599,233	+				-1.0
2,599,239	-				+0.9
2,599,239	-				-1.3
2,599,239	-				-0.4
2,599,239	-				+0.9
2,599,239	-				-0.6
2,599,239	-				-1.8
2,599,239	-				-0.4
2,599,239	-				-0.2
2,599,241	-				-0.5
2,599,241	-				+0.7
2,599,241	-				+0.6
2,599,273	-				+1.6
2,599,273	-				-1.5
2,599,280	-				+0.6
2,599,315	-				-0.2
2,599,323	+				-1.3
2,599,325	-				-1.6
2,599,326	-				+1.0
2,599,331	-				-0.8
2,599,335	+				+0.1
2,599,335	+				-0.8
2,599,344	-				+0.4
2,599,345	+				+1.6
2,599,358	+				-0.7
2,599,366	-				-0.6
2,599,368	+				-1.6
2,599,368	-				-1.8
2,599,373	+				+0.3
2,599,380	-				+1.0
2,599,382	+				-1.0
2,599,390	-				-1.6
2,599,398	+				+0.5
2,599,406	+				-2.6
2,599,406	+				-0.9
2,599,406	+				+0.2
2,599,406	+				-1.6
2,599,406	+				-0.7
2,599,406	+				+0.7
2,599,406	+				-0.0
2,599,406	+				-0.2
2,599,409	-				+0.7
2,599,414	-				-1.2
2,599,414	-				-0.7
2,599,414	-				-0.4
2,599,414	-				-1.1
2,599,414	-				-1.1
2,599,414	-				-0.6
2,599,414	-				+0.3
2,599,414	-				-0.5
2,599,414	-				-0.7
2,599,414	-				+0.4
2,599,414	-				+0.8
2,599,414	-				-0.5
2,599,414	-				+0.1
2,599,418	+				+0.2
2,599,428	+				-1.7
2,599,433	+				-1.3
2,599,443	+		GFF2585	0.10	-0.7
2,599,443	+		GFF2585	0.10	-2.2
2,599,443	+		GFF2585	0.10	-0.5
2,599,449	+		GFF2585	0.10	+0.3
2,599,451	-		GFF2585	0.10	+0.9
2,599,479	+		GFF2585	0.12	-1.3
2,599,486	+		GFF2585	0.12	-0.4
2,599,515	-		GFF2585	0.14	+0.6
2,599,515	-		GFF2585	0.14	+0.4
2,599,515	-		GFF2585	0.14	-1.3
2,599,522	-		GFF2585	0.14	-0.4
2,599,533	-		GFF2585	0.14	-0.8
2,599,533	-		GFF2585	0.14	-0.1
2,599,533	-		GFF2585	0.14	+0.6
2,599,538	+		GFF2585	0.15	-0.4
2,599,538	+		GFF2585	0.15	+0.1
2,599,548	+		GFF2585	0.15	+1.1
2,599,548	+		GFF2585	0.15	-0.8
2,599,548	+		GFF2585	0.15	+1.0
2,599,556	-		GFF2585	0.16	+0.9
2,599,559	+		GFF2585	0.16	+0.0
2,599,560	+		GFF2585	0.16	-0.5
2,599,560	+		GFF2585	0.16	-1.0
2,599,561	-		GFF2585	0.16	-1.5
2,599,568	-		GFF2585	0.16	-0.8
2,599,575	+		GFF2585	0.16	-0.3
2,599,575	+		GFF2585	0.16	+0.4
2,599,580	+		GFF2585	0.17	-0.5
2,599,580	+		GFF2585	0.17	+1.1
2,599,589	+		GFF2585	0.17	-0.4
2,599,597	-		GFF2585	0.18	-0.5
2,599,599	-		GFF2585	0.18	-0.3
2,599,626	-		GFF2585	0.19	+0.9
2,599,633	-		GFF2585	0.19	-2.4
2,599,680	+		GFF2585	0.22	-0.3
2,599,683	+		GFF2585	0.22	-0.7
2,599,683	+		GFF2585	0.22	+1.4
2,599,693	-		GFF2585	0.22	-0.3
2,599,693	-		GFF2585	0.22	-2.1
2,599,693	-		GFF2585	0.22	-0.7
2,599,697	-		GFF2585	0.22	-1.1
2,599,729	-		GFF2585	0.24	+0.1
2,599,729	-		GFF2585	0.24	-0.3
2,599,729	-		GFF2585	0.24	+1.0
2,599,754	+		GFF2585	0.25	-0.9
2,599,768	+		GFF2585	0.26	-0.8
2,599,776	-		GFF2585	0.26	+1.3
2,599,782	-		GFF2585	0.27	-0.6
2,599,782	-		GFF2585	0.27	-1.7
2,599,819	+		GFF2585	0.28	-0.6
2,599,822	-		GFF2585	0.29	-0.9
2,599,823	+		GFF2585	0.29	-1.9
2,599,831	-		GFF2585	0.29	+0.2
2,599,832	-		GFF2585	0.29	-1.3
2,599,836	+		GFF2585	0.29	-0.3
2,599,854	-		GFF2585	0.30	+0.2
2,599,890	-		GFF2585	0.32	-1.5
2,599,890	-		GFF2585	0.32	+0.0
2,599,890	-		GFF2585	0.32	-2.0
2,599,890	-		GFF2585	0.32	-0.5
2,599,923	+		GFF2585	0.34	-1.9
2,599,923	+		GFF2585	0.34	-0.5
2,599,923	+		GFF2585	0.34	-0.7
2,599,931	-		GFF2585	0.34	-0.4
2,599,931	-		GFF2585	0.34	-1.1
2,599,931	-		GFF2585	0.34	-1.6
2,599,932	-		GFF2585	0.34	-1.3
2,599,932	-		GFF2585	0.34	-0.4
2,599,970	+		GFF2585	0.36	-0.2
2,600,006	-		GFF2585	0.38	-1.0
2,600,008	+		GFF2585	0.38	-1.4
2,600,018	+		GFF2585	0.38	-0.8
2,600,026	-		GFF2585	0.39	-0.1
2,600,026	-		GFF2585	0.39	+0.4
2,600,031	+		GFF2585	0.39	+0.7
2,600,036	-		GFF2585	0.39	+1.4
2,600,041	-		GFF2585	0.39	-0.6
2,600,041	-		GFF2585	0.39	-0.3
2,600,095	-		GFF2585	0.42	+0.3
2,600,095	-		GFF2585	0.42	-1.3
2,600,108	+		GFF2585	0.43	-1.8
2,600,108	+		GFF2585	0.43	+0.2
2,600,115	+		GFF2585	0.43	+0.4
2,600,116	-		GFF2585	0.43	-0.3
2,600,116	-		GFF2585	0.43	-0.8
2,600,123	-		GFF2585	0.43	-0.7
2,600,135	+		GFF2585	0.44	-0.5
2,600,136	+		GFF2585	0.44	-0.6
2,600,139	-		GFF2585	0.44	-1.3
2,600,139	-		GFF2585	0.44	+0.4
2,600,143	-		GFF2585	0.44	-0.1
2,600,155	+		GFF2585	0.45	-2.0
2,600,163	+		GFF2585	0.45	+1.5
2,600,173	+		GFF2585	0.46	-0.2
2,600,183	-		GFF2585	0.46	+1.4
2,600,197	+		GFF2585	0.47	-1.2
2,600,197	+		GFF2585	0.47	+0.7
2,600,197	+		GFF2585	0.47	+0.1
2,600,212	+		GFF2585	0.48	-2.0
2,600,246	-		GFF2585	0.49	-2.3
2,600,253	+		GFF2585	0.50	-1.5
2,600,255	+		GFF2585	0.50	-1.3
2,600,262	+		GFF2585	0.50	+0.0
2,600,262	+		GFF2585	0.50	-0.6
2,600,267	+		GFF2585	0.50	+0.1
2,600,267	+		GFF2585	0.50	-1.3
2,600,267	+		GFF2585	0.50	+1.3
2,600,267	+		GFF2585	0.50	-0.7
2,600,272	+		GFF2585	0.51	-0.4
2,600,275	-		GFF2585	0.51	-0.2
2,600,275	-		GFF2585	0.51	-2.7
2,600,290	+		GFF2585	0.52	-0.6
2,600,294	-		GFF2585	0.52	-0.2
2,600,297	-		GFF2585	0.52	+0.7
2,600,319	-		GFF2585	0.53	-1.6
2,600,328	+		GFF2585	0.53	-1.3
2,600,343	-		GFF2585	0.54	-0.5
2,600,424	+		GFF2585	0.58	-0.7
2,600,424	+		GFF2585	0.58	-0.5
2,600,433	+		GFF2585	0.59	-0.7
2,600,438	+		GFF2585	0.59	-1.0
2,600,438	+		GFF2585	0.59	-1.1
2,600,438	+		GFF2585	0.59	-1.0
2,600,438	+		GFF2585	0.59	-0.7
2,600,438	+		GFF2585	0.59	+0.2
2,600,439	-		GFF2585	0.59	+0.4
2,600,441	-		GFF2585	0.59	-0.3
2,600,446	-		GFF2585	0.59	-0.3
2,600,446	-		GFF2585	0.59	+0.3
2,600,446	-		GFF2585	0.59	+0.3
2,600,446	-		GFF2585	0.59	-0.6
2,600,446	-		GFF2585	0.59	+0.4
2,600,451	-		GFF2585	0.59	+0.9
2,600,458	+		GFF2585	0.60	-0.3
2,600,481	+		GFF2585	0.61	-1.7
2,600,483	+		GFF2585	0.61	-0.4
2,600,483	+		GFF2585	0.61	-0.7
2,600,483	+		GFF2585	0.61	-0.5
2,600,488	+		GFF2585	0.61	-0.4
2,600,491	-		GFF2585	0.61	-1.7
2,600,491	-		GFF2585	0.61	-0.3
2,600,491	-		GFF2585	0.61	-1.0
2,600,491	-		GFF2585	0.61	+0.6
2,600,491	-		GFF2585	0.61	+0.3
2,600,491	-		GFF2585	0.61	-1.2
2,600,509	+		GFF2585	0.62	+0.0
2,600,524	+		GFF2585	0.63	+0.5
2,600,532	-		GFF2585	0.63	+0.2
2,600,546	+		GFF2585	0.64	-1.7
2,600,546	+		GFF2585	0.64	-0.5
2,600,554	-		GFF2585	0.65	+0.9
2,600,564	-		GFF2585	0.65	+0.5
2,600,610	+		GFF2585	0.67	-1.7
2,600,610	+		GFF2585	0.67	+1.3
2,600,610	+		GFF2585	0.67	-1.9
2,600,610	+		GFF2585	0.67	-0.7
2,600,610	+		GFF2585	0.67	-1.2
2,600,610	+		GFF2585	0.67	+0.7
2,600,610	-		GFF2585	0.67	-0.9
2,600,610	-		GFF2585	0.67	+0.0
2,600,618	-		GFF2585	0.68	+0.1
2,600,618	-		GFF2585	0.68	-1.7
2,600,622	+		GFF2585	0.68	+0.9
2,600,634	+		GFF2585	0.68	+0.1
2,600,640	+		GFF2585	0.69	+0.0
2,600,648	+		GFF2585	0.69	-0.3
2,600,648	-		GFF2585	0.69	+1.3
2,600,648	-		GFF2585	0.69	-1.0
2,600,654	+		GFF2585	0.69	+0.2
2,600,656	+		GFF2585	0.70	-0.5
2,600,660	+		GFF2585	0.70	-1.8
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2,600,865	+		GFF2585	0.80	-1.3
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2,601,062	-		GFF2585	0.89	-0.8
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2,601,074	-				-0.4
2,601,081	+				+0.4
2,601,081	+				-2.6
2,601,081	+				+0.0
2,601,089	-				-1.1
2,601,109	+				+0.1
2,601,113	-				+0.5
2,601,114	+				-1.6
2,601,117	-				+0.5
2,601,117	-				+0.7
2,601,122	-				+0.9
2,601,126	+				+0.1
2,601,128	+				-2.4
2,601,128	+				-0.3
2,601,128	+				-0.8
2,601,128	+				-0.1
2,601,128	+				-0.1
2,601,133	+				+0.3
2,601,136	-				+0.4
2,601,137	+				-2.6
2,601,138	+				-0.4
2,601,139	+				-1.1
2,601,146	-				-1.1
2,601,163	+				-0.6
2,601,171	-				-1.6
2,601,197	+				-1.6
2,601,206	-				+0.7
2,601,214	+				+0.1
2,601,214	+				-0.7
2,601,222	-				+0.8
2,601,222	-				-0.8
2,601,224	+				-1.0
2,601,243	+				-1.7
2,601,243	+				-0.1
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2,601,251	-				-0.5
2,601,279	+				+0.7
2,601,284	+				-0.4
2,601,287	-				-0.8
2,601,287	-				-1.1
2,601,287	-				+0.6
2,601,287	-				+0.5
2,601,287	-				+0.4
2,601,304	-				-1.1
2,601,306	-				-1.1
2,601,306	-				+1.9
2,601,313	+				-0.8
2,601,317	+				-1.0
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