Strain Fitness in Sphingobium sp. HT1-2 around GFF2519

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,538,554	-		GFF2516	0.37	-0.4
2,538,569	-		GFF2516	0.41	+0.1
2,538,569	-		GFF2516	0.41	-0.5
2,538,586	+		GFF2516	0.46	-1.5
2,538,587	+		GFF2516	0.46	-1.1
2,538,610	+		GFF2516	0.53	+0.8
2,538,631	-		GFF2516	0.58	+0.5
2,538,667	+		GFF2516	0.68	-0.1
2,538,688	+		GFF2516	0.74	-0.8
2,538,696	-		GFF2516	0.76	-0.1
2,538,698	+		GFF2516	0.77	-2.0
2,538,700	+		GFF2516	0.78	+0.8
2,538,710	+		GFF2516	0.80	-1.6
2,538,717	+		GFF2516	0.82	-0.7
2,538,718	-		GFF2516	0.82	-0.2
2,538,719	-		GFF2516	0.83	+0.6
2,538,725	-		GFF2516	0.84	+0.9
2,538,787	-				+1.0
2,538,817	+		GFF2517	0.30	-0.7
2,538,830	+		GFF2517	0.47	-0.0
2,538,846	-		GFF2517	0.68	+0.5
2,538,860	-		GFF2517	0.86	-1.2
2,538,862	+		GFF2517	0.88	-1.6
2,538,862	+		GFF2517	0.88	-0.5
2,538,869	+				-1.0
2,538,919	+				+0.3
2,538,924	+				-1.0
2,538,924	+				-1.8
2,538,924	+				+1.0
2,538,932	-				-1.2
2,538,932	-				+0.6
2,538,934	-				-0.2
2,538,962	-				-1.2
2,538,963	-				+0.1
2,538,965	+				+0.3
2,538,965	+				-0.9
2,538,979	+				-1.0
2,538,981	+				-0.7
2,538,984	+				-1.1
2,539,001	-				-0.5
2,539,003	+				-1.2
2,539,040	+				+1.4
2,539,040	+				-0.4
2,539,040	+				-0.9
2,539,040	+				-0.4
2,539,040	+				+1.1
2,539,040	+				+0.9
2,539,040	+				-1.7
2,539,040	+				+0.4
2,539,040	+				-1.3
2,539,040	+				+0.6
2,539,040	+				-0.2
2,539,040	+				-1.2
2,539,040	+				-1.1
2,539,040	+				-1.7
2,539,040	+				+0.7
2,539,040	+				-0.8
2,539,040	+				+0.1
2,539,040	+				+0.6
2,539,048	-				-2.7
2,539,048	-				-0.8
2,539,048	-				-1.1
2,539,048	-				-1.7
2,539,048	-				-0.3
2,539,048	-				-1.5
2,539,048	-				+0.8
2,539,048	-				-0.2
2,539,048	-				-0.4
2,539,048	-				-0.2
2,539,048	-				-0.4
2,539,048	-				-0.4
2,539,048	-				-1.0
2,539,048	-				+0.9
2,539,048	-				-1.7
2,539,048	-				-0.6
2,539,064	+				-0.2
2,539,082	-				-0.6
2,539,095	+				-0.1
2,539,107	+				+0.8
2,539,121	-		GFF2518	0.13	-0.8
2,539,122	+		GFF2518	0.13	+0.2
2,539,123	+		GFF2518	0.13	+0.1
2,539,123	+		GFF2518	0.13	-0.5
2,539,123	+		GFF2518	0.13	+1.6
2,539,123	+		GFF2518	0.13	-0.9
2,539,123	+		GFF2518	0.13	-0.9
2,539,125	+		GFF2518	0.14	-0.0
2,539,130	-		GFF2518	0.15	-0.2
2,539,130	-		GFF2518	0.15	-0.8
2,539,131	-		GFF2518	0.15	-0.4
2,539,131	-		GFF2518	0.15	-0.6
2,539,131	-		GFF2518	0.15	-0.5
2,539,133	-		GFF2518	0.16	+0.3
2,539,146	+		GFF2518	0.19	+0.6
2,539,168	+		GFF2518	0.24	+0.4
2,539,169	-		GFF2518	0.24	-0.6
2,539,176	+		GFF2518	0.26	-1.5
2,539,177	+		GFF2518	0.26	+0.3
2,539,177	+		GFF2518	0.26	+0.3
2,539,177	+		GFF2518	0.26	-0.9
2,539,182	+		GFF2518	0.28	-0.2
2,539,185	-		GFF2518	0.28	+0.2
2,539,185	-		GFF2518	0.28	-0.2
2,539,193	+		GFF2518	0.30	+0.2
2,539,200	-		GFF2518	0.32	+1.0
2,539,207	+		GFF2518	0.34	-2.1
2,539,209	+		GFF2518	0.34	+0.7
2,539,222	+		GFF2518	0.37	+1.2
2,539,238	+		GFF2518	0.41	-1.4
2,539,238	-		GFF2518	0.41	-0.8
2,539,258	+		GFF2518	0.46	-1.4
2,539,258	+		GFF2518	0.46	+1.2
2,539,265	-		GFF2518	0.48	-1.8
2,539,265	-		GFF2518	0.48	-0.2
2,539,265	-		GFF2518	0.48	-0.7
2,539,265	-		GFF2518	0.48	-0.0
2,539,266	-		GFF2518	0.48	+0.4
2,539,266	-		GFF2518	0.48	-2.1
2,539,268	+		GFF2518	0.48	-0.2
2,539,268	+		GFF2518	0.48	-1.3
2,539,270	-		GFF2518	0.49	-0.5
2,539,271	+		GFF2518	0.49	+0.8
2,539,303	+		GFF2518	0.57	+0.1
2,539,303	+		GFF2518	0.57	-0.6
2,539,303	+		GFF2518	0.57	-0.4
2,539,303	+		GFF2518	0.57	-0.6
2,539,303	+		GFF2518	0.57	-0.8
2,539,304	-		GFF2518	0.57	-0.9
2,539,304	-		GFF2518	0.57	-0.5
2,539,311	-		GFF2518	0.59	+0.5
2,539,311	-		GFF2518	0.59	+1.0
2,539,311	-		GFF2518	0.59	-0.9
2,539,311	-		GFF2518	0.59	-1.6
2,539,313	+		GFF2518	0.59	-0.3
2,539,318	+		GFF2518	0.60	-1.8
2,539,318	+		GFF2518	0.60	-0.3
2,539,318	+		GFF2518	0.60	+0.6
2,539,318	+		GFF2518	0.60	+0.5
2,539,318	+		GFF2518	0.60	-0.9
2,539,318	+		GFF2518	0.60	-1.1
2,539,318	+		GFF2518	0.60	-0.1
2,539,318	+		GFF2518	0.60	-1.9
2,539,318	+		GFF2518	0.60	-2.1
2,539,318	+		GFF2518	0.60	-2.3
2,539,318	+		GFF2518	0.60	-1.2
2,539,325	+		GFF2518	0.62	+0.5
2,539,326	+		GFF2518	0.62	-0.5
2,539,326	-		GFF2518	0.62	-0.6
2,539,326	-		GFF2518	0.62	+1.2
2,539,326	-		GFF2518	0.62	+1.1
2,539,326	-		GFF2518	0.62	-2.0
2,539,326	-		GFF2518	0.62	+0.6
2,539,334	-		GFF2518	0.64	-1.0
2,539,334	-		GFF2518	0.64	-1.9
2,539,364	-		GFF2518	0.71	-0.6
2,539,385	+		GFF2518	0.77	+0.8
2,539,464	+				+2.1
2,539,532	-				-1.4
2,539,541	+				-0.6
2,539,612	-		GFF2519	0.14	-0.7
2,539,648	-		GFF2519	0.21	-0.2
2,539,648	-		GFF2519	0.21	-0.6
2,539,655	+		GFF2519	0.22	-0.7
2,539,655	+		GFF2519	0.22	+0.5
2,539,655	+		GFF2519	0.22	-0.8
2,539,663	-		GFF2519	0.23	-0.2
2,539,672	+		GFF2519	0.25	+0.1
2,539,672	+		GFF2519	0.25	-1.6
2,539,672	+		GFF2519	0.25	-1.8
2,539,672	+		GFF2519	0.25	-0.9
2,539,680	-		GFF2519	0.26	+0.1
2,539,680	-		GFF2519	0.26	-0.8
2,539,680	-		GFF2519	0.26	+0.1
2,539,682	+		GFF2519	0.26	-1.0
2,539,722	+		GFF2519	0.33	-0.2
2,539,723	+		GFF2519	0.33	-1.2
2,539,732	-		GFF2519	0.35	+1.4
2,539,755	+		GFF2519	0.39	-0.2
2,539,755	-		GFF2519	0.39	+0.1
2,539,765	-		GFF2519	0.41	-1.5
2,539,780	+		GFF2519	0.43	-0.0
2,539,780	+		GFF2519	0.43	-1.1
2,539,788	+		GFF2519	0.44	-1.9
2,539,789	-		GFF2519	0.45	-1.0
2,539,789	-		GFF2519	0.45	+0.8
2,539,815	+		GFF2519	0.49	+1.1
2,539,823	-		GFF2519	0.50	+0.4
2,539,825	+		GFF2519	0.51	-1.1
2,539,825	+		GFF2519	0.51	-0.0
2,539,833	-		GFF2519	0.52	+1.4
2,539,833	-		GFF2519	0.52	-1.5
2,539,843	-		GFF2519	0.54	-0.2
2,539,876	+		GFF2519	0.59	+0.6
2,539,884	-		GFF2519	0.61	+0.9
2,539,945	+		GFF2519	0.71	-0.5
2,539,949	+		GFF2519	0.72	+0.1
2,539,950	+		GFF2519	0.72	+1.0
2,539,950	+		GFF2519	0.72	-0.3
2,539,950	+		GFF2519	0.72	+0.7
2,539,950	+		GFF2519	0.72	-0.7
2,539,950	+		GFF2519	0.72	-0.0
2,539,950	+		GFF2519	0.72	-0.7
2,539,950	+		GFF2519	0.72	+0.1
2,539,950	+		GFF2519	0.72	+1.1
2,539,957	-		GFF2519	0.73	-0.9
2,539,958	-		GFF2519	0.74	+0.8
2,539,958	-		GFF2519	0.74	-0.6
2,539,958	-		GFF2519	0.74	+0.1
2,539,958	-		GFF2519	0.74	+1.4
2,539,958	-		GFF2519	0.74	-0.8
2,539,958	-		GFF2519	0.74	-0.4
2,539,963	-		GFF2519	0.74	-0.9
2,539,984	+		GFF2519	0.78	-2.0
2,540,022	+		GFF2519	0.84	-0.3
2,540,022	+		GFF2519	0.84	-0.6
2,540,030	-		GFF2519	0.86	-0.5
2,540,080	-				-0.3
2,540,165	+		GFF2520	0.23	+0.4
2,540,170	+		GFF2520	0.26	-1.0
2,540,173	-		GFF2520	0.28	-0.7
2,540,173	-		GFF2520	0.28	-0.9
2,540,175	+		GFF2520	0.29	+0.8
2,540,175	+		GFF2520	0.29	+1.6
2,540,175	+		GFF2520	0.29	+0.3
2,540,175	+		GFF2520	0.29	-0.7
2,540,175	+		GFF2520	0.29	+0.3
2,540,180	+		GFF2520	0.32	-0.2
2,540,180	+		GFF2520	0.32	-0.7
2,540,180	+		GFF2520	0.32	+0.1
2,540,180	+		GFF2520	0.32	-0.8
2,540,183	-		GFF2520	0.34	+0.8
2,540,183	-		GFF2520	0.34	-0.3
2,540,183	-		GFF2520	0.34	-1.0
2,540,183	-		GFF2520	0.34	+0.0
2,540,183	-		GFF2520	0.34	+1.3
2,540,188	-		GFF2520	0.37	+0.4
2,540,193	-		GFF2520	0.40	+0.0
2,540,196	+		GFF2520	0.42	-0.3
2,540,212	+		GFF2520	0.52	+0.9
2,540,220	-		GFF2520	0.57	+0.4
2,540,220	-		GFF2520	0.57	+0.5
2,540,257	+		GFF2520	0.80	-0.6
2,540,301	-				-0.6
2,540,303	+				-0.0
2,540,303	+				-0.2
2,540,311	-				-1.0
2,540,311	-				+0.8
2,540,311	-				-1.5
2,540,311	-				+0.1
2,540,316	+				-0.0
2,540,319	-				-1.3
2,540,319	-				-0.9
2,540,319	-				-1.3
2,540,319	-				-1.2
2,540,334	+				+0.2
2,540,334	+				-0.4
2,540,334	+				+0.1
2,540,336	+		GFF2521	0.11	-0.0
2,540,336	+		GFF2521	0.11	-1.2
2,540,336	+		GFF2521	0.11	-1.0
2,540,336	+		GFF2521	0.11	-0.6
2,540,339	-		GFF2521	0.12	-1.0
2,540,344	+		GFF2521	0.14	+0.6
2,540,344	+		GFF2521	0.14	+1.1
2,540,344	-		GFF2521	0.14	-0.6
2,540,344	-		GFF2521	0.14	+0.2
2,540,344	-		GFF2521	0.14	-1.2
2,540,344	-		GFF2521	0.14	+1.6
2,540,344	-		GFF2521	0.14	-1.8
2,540,344	-		GFF2521	0.14	+0.5
2,540,352	-		GFF2521	0.18	-0.6
2,540,357	+		GFF2521	0.20	-0.6
2,540,364	-		GFF2521	0.24	-1.4
2,540,373	-		GFF2521	0.28	-0.9
2,540,380	-		GFF2521	0.31	-1.3
2,540,381	-		GFF2521	0.31	-0.2
2,540,398	+		GFF2521	0.39	-0.6
2,540,400	+		GFF2521	0.40	-0.6
2,540,406	-		GFF2521	0.43	-1.2
2,540,406	-		GFF2521	0.43	+0.4
2,540,408	+		GFF2521	0.44	-0.0
2,540,411	-		GFF2521	0.45	-0.2
2,540,416	-		GFF2521	0.48	-1.2
2,540,418	+		GFF2521	0.49	-0.3
2,540,421	-		GFF2521	0.50	-0.9
2,540,421	-		GFF2521	0.50	-0.7
2,540,421	-		GFF2521	0.50	+0.2
2,540,434	-		GFF2521	0.56	-0.2
2,540,434	-		GFF2521	0.56	-1.4
2,540,473	+		GFF2521	0.74	-1.8
2,540,473	+		GFF2521	0.74	+0.8
2,540,481	-		GFF2521	0.78	-1.2
2,540,481	-		GFF2521	0.78	-0.7
2,540,481	-		GFF2521	0.78	-0.5
2,540,485	-		GFF2521	0.80	-0.6
2,540,487	+		GFF2521	0.81	-1.6
2,540,492	+		GFF2521	0.83	+0.5
2,540,493	-		GFF2521	0.83	-1.1
2,540,493	-		GFF2521	0.83	-0.2
2,540,497	+		GFF2521	0.85	-0.7
2,540,497	+		GFF2521	0.85	+0.4
2,540,497	+		GFF2521	0.85	-0.2
2,540,500	-		GFF2521	0.87	-0.1
2,540,500	-		GFF2521	0.87	-0.7
2,540,500	-		GFF2521	0.87	-0.5
2,540,503	+		GFF2521	0.88	-0.7
2,540,505	-		GFF2521	0.89	-1.4
2,540,505	-		GFF2521	0.89	-0.7
2,540,506	-		GFF2521	0.89	-0.9
2,540,508	+				+0.4
2,540,508	+				-1.4
2,540,508	+				-1.5
2,540,508	+				+0.2
2,540,508	+				+1.3
2,540,508	+				-0.6
2,540,508	+				-1.6
2,540,508	+				+0.0
2,540,508	+				-0.5
2,540,516	-				-1.9
2,540,516	-				-0.2
2,540,523	-				-0.4
2,540,531	-				-0.6
2,540,531	-				-0.1
2,540,553	+				-0.8
2,540,560	+				-1.7
2,540,560	+				-2.2
2,540,560	+				-0.2
2,540,560	+				+2.0
2,540,560	+				+0.3
2,540,560	+				-0.6
2,540,561	-				-0.9
2,540,561	-				-2.3
2,540,561	-				-1.6
2,540,561	-				-0.9
2,540,563	+		GFF2522	0.10	-0.5
2,540,568	-		GFF2522	0.13	+0.6
2,540,568	-		GFF2522	0.13	-0.1
2,540,570	-		GFF2522	0.14	-0.5
2,540,573	+		GFF2522	0.16	+0.5
2,540,578	+		GFF2522	0.18	-0.0
2,540,579	+		GFF2522	0.19	-1.1
2,540,579	+		GFF2522	0.19	-0.8
2,540,586	+		GFF2522	0.23	-1.2
2,540,586	+		GFF2522	0.23	-0.0
2,540,586	-		GFF2522	0.23	+0.7
2,540,586	-		GFF2522	0.23	+0.7
2,540,586	-		GFF2522	0.23	-0.3
2,540,594	-		GFF2522	0.27	+1.1
2,540,634	+		GFF2522	0.48	-1.1
2,540,634	+		GFF2522	0.48	-0.7
2,540,642	-		GFF2522	0.53	+0.6
2,540,642	-		GFF2522	0.53	-0.2
2,540,669	+		GFF2522	0.67	-0.2
2,540,677	-		GFF2522	0.72	+0.8
2,540,677	-		GFF2522	0.72	+1.0
2,540,688	+		GFF2522	0.77	+0.8
2,540,714	-				-0.2
2,540,735	+				-2.4
2,540,743	-				-1.0
2,540,743	-				-1.2
2,540,750	+				-0.6
2,540,860	+				-0.1
2,540,866	+				-0.7
2,540,895	-				-0.9
2,540,928	+				-0.4
2,540,939	-				-1.0
2,540,939	-				-0.2
2,540,969	-				-0.5
2,540,969	-				-0.8
2,540,973	-				-1.6
2,540,975	+				-1.3
2,540,977	+				-0.4
2,540,985	+				-0.3
2,540,985	-				-2.1
2,540,985	-				-0.8
2,540,993	-				-0.4
2,540,995	+				-0.1
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