Strain Fitness in Sphingobium sp. HT1-2 around GFF2490

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,510,935	-		GFF2488	0.47	+0.1
2,510,936	-		GFF2488	0.47	-1.0
2,510,936	-		GFF2488	0.47	+0.3
2,510,958	-		GFF2488	0.49	-0.8
2,510,971	-		GFF2488	0.50	-0.6
2,510,974	-		GFF2488	0.51	-0.7
2,510,998	+		GFF2488	0.53	-0.2
2,511,038	-		GFF2488	0.56	-0.5
2,511,038	-		GFF2488	0.56	-0.4
2,511,052	+		GFF2488	0.57	-0.5
2,511,086	+		GFF2488	0.60	-0.6
2,511,086	+		GFF2488	0.60	-0.4
2,511,086	+		GFF2488	0.60	-0.7
2,511,086	+		GFF2488	0.60	-0.6
2,511,086	+		GFF2488	0.60	-1.5
2,511,086	+		GFF2488	0.60	-0.6
2,511,086	+		GFF2488	0.60	+0.7
2,511,086	+		GFF2488	0.60	+1.8
2,511,086	+		GFF2488	0.60	+1.4
2,511,086	+		GFF2488	0.60	+0.6
2,511,086	+		GFF2488	0.60	+0.2
2,511,086	+		GFF2488	0.60	-0.2
2,511,086	+		GFF2488	0.60	+0.6
2,511,094	-		GFF2488	0.61	-1.6
2,511,094	-		GFF2488	0.61	-0.0
2,511,094	-		GFF2488	0.61	-0.5
2,511,094	-		GFF2488	0.61	-0.9
2,511,094	-		GFF2488	0.61	-0.1
2,511,094	-		GFF2488	0.61	-0.8
2,511,115	+		GFF2488	0.63	+0.3
2,511,115	+		GFF2488	0.63	+0.6
2,511,115	+		GFF2488	0.63	-1.2
2,511,115	+		GFF2488	0.63	-0.5
2,511,125	+		GFF2488	0.64	-1.9
2,511,125	+		GFF2488	0.64	-0.7
2,511,125	+		GFF2488	0.64	-0.5
2,511,143	-		GFF2488	0.65	-0.5
2,511,143	-		GFF2488	0.65	-0.4
2,511,166	+		GFF2488	0.67	-1.3
2,511,174	+		GFF2488	0.68	-0.2
2,511,174	-		GFF2488	0.68	-1.2
2,511,179	-		GFF2488	0.68	-2.1
2,511,192	-		GFF2488	0.69	-0.9
2,511,204	-		GFF2488	0.70	+0.4
2,511,220	+		GFF2488	0.72	-0.9
2,511,230	+		GFF2488	0.73	+1.2
2,511,230	+		GFF2488	0.73	-0.5
2,511,230	+		GFF2488	0.73	-1.1
2,511,238	-		GFF2488	0.73	+0.6
2,511,238	-		GFF2488	0.73	-0.5
2,511,238	-		GFF2488	0.73	-0.1
2,511,238	-		GFF2488	0.73	+0.5
2,511,238	-		GFF2488	0.73	+0.7
2,511,238	-		GFF2488	0.73	-0.6
2,511,247	+		GFF2488	0.74	-0.4
2,511,250	+		GFF2488	0.74	-0.6
2,511,260	+		GFF2488	0.75	-1.7
2,511,275	+		GFF2488	0.77	-2.1
2,511,282	-		GFF2488	0.77	-1.4
2,511,299	-		GFF2488	0.79	-0.5
2,511,343	+		GFF2488	0.82	+0.2
2,511,397	-		GFF2488	0.87	-2.7
2,511,413	+		GFF2488	0.89	-2.1
2,511,452	-				+0.8
2,511,459	-				-0.9
2,511,464	+				+0.6
2,511,478	-				+1.8
2,511,504	+				+0.0
2,511,511	-				-0.6
2,511,518	-				-0.4
2,511,520	-				-1.0
2,511,520	-				-0.5
2,511,532	+				-1.4
2,511,532	+				-0.5
2,511,532	+				+1.1
2,511,535	-				-0.4
2,511,540	-				-0.8
2,511,547	-				+0.5
2,511,559	+				+0.6
2,511,564	+				-0.5
2,511,564	+				-0.9
2,511,577	+				-0.2
2,511,590	+				-0.8
2,511,600	-				+0.0
2,511,606	+				-1.4
2,511,610	-		GFF2489	0.11	-1.0
2,511,619	-		GFF2489	0.14	-2.0
2,511,621	-		GFF2489	0.15	-1.0
2,511,631	-		GFF2489	0.19	+2.1
2,511,636	+		GFF2489	0.21	-0.2
2,511,729	+		GFF2489	0.59	-1.9
2,511,755	+		GFF2489	0.70	-0.8
2,511,833	-				-0.4
2,511,844	+				-1.5
2,511,857	-				-1.0
2,511,885	+				-0.5
2,511,887	-				+0.6
2,511,925	+				+0.6
2,511,925	+				-2.2
2,511,936	+				+0.5
2,511,952	+				-1.3
2,512,008	+		GFF2490	0.19	-0.6
2,512,008	+		GFF2490	0.19	-0.7
2,512,014	-		GFF2490	0.20	-0.6
2,512,025	+		GFF2490	0.23	-2.1
2,512,033	-		GFF2490	0.24	+0.3
2,512,033	-		GFF2490	0.24	+0.6
2,512,033	-		GFF2490	0.24	-1.3
2,512,033	-		GFF2490	0.24	-1.3
2,512,033	-		GFF2490	0.24	-1.4
2,512,033	-		GFF2490	0.24	-2.4
2,512,043	+		GFF2490	0.26	-1.9
2,512,050	-		GFF2490	0.28	+0.8
2,512,058	+		GFF2490	0.29	-0.3
2,512,063	+		GFF2490	0.30	-1.6
2,512,071	-		GFF2490	0.32	-0.1
2,512,074	+		GFF2490	0.32	-0.9
2,512,096	+		GFF2490	0.37	-0.8
2,512,104	-		GFF2490	0.38	-1.7
2,512,159	-		GFF2490	0.49	+0.1
2,512,234	+		GFF2490	0.64	-0.8
2,512,234	+		GFF2490	0.64	-1.3
2,512,234	+		GFF2490	0.64	-1.6
2,512,234	+		GFF2490	0.64	-2.4
2,512,234	+		GFF2490	0.64	-0.5
2,512,234	+		GFF2490	0.64	-1.0
2,512,242	-		GFF2490	0.66	-1.5
2,512,242	-		GFF2490	0.66	-1.6
2,512,244	+		GFF2490	0.66	+0.5
2,512,261	-		GFF2490	0.69	-0.9
2,512,278	+		GFF2490	0.73	+0.4
2,512,278	+		GFF2490	0.73	-0.9
2,512,278	+		GFF2490	0.73	-1.4
2,512,278	+		GFF2490	0.73	-1.3
2,512,286	-		GFF2490	0.74	-1.0
2,512,286	-		GFF2490	0.74	-1.1
2,512,286	-		GFF2490	0.74	-1.4
2,512,293	+		GFF2490	0.76	-1.0
2,512,293	+		GFF2490	0.76	-0.5
2,512,293	+		GFF2490	0.76	-1.4
2,512,301	-		GFF2490	0.77	+1.3
2,512,301	-		GFF2490	0.77	-0.6
2,512,303	+		GFF2490	0.78	+0.2
2,512,303	-		GFF2490	0.78	+0.9
2,512,311	-		GFF2490	0.79	-0.9
2,512,340	-		GFF2490	0.85	-0.1
2,512,350	+		GFF2490	0.87	-1.8
2,512,358	-		GFF2490	0.89	-0.2
2,512,390	+				-0.7
2,512,390	+				-0.9
2,512,390	+				+1.4
2,512,390	+				-0.5
2,512,390	+				-1.4
2,512,398	-				-0.3
2,512,398	-				-1.6
2,512,398	-				-1.0
2,512,398	-				+0.3
2,512,433	-				-0.3
2,512,451	-				-1.9
2,512,463	+				+0.9
2,512,463	+				+0.2
2,512,463	+				-1.2
2,512,463	+				-0.5
2,512,465	+				-0.5
2,512,471	-				-1.2
2,512,471	-				-0.2
2,512,471	-				-0.3
2,512,471	-				-1.1
2,512,471	-				-1.3
2,512,471	-				+0.5
2,512,531	+				+0.1
2,512,532	-				-0.9
2,512,569	-		GFF2491	0.11	-1.6
2,512,577	-		GFF2491	0.12	-1.7
2,512,577	-		GFF2491	0.12	-0.9
2,512,663	+		GFF2491	0.23	-1.0
2,512,663	+		GFF2491	0.23	-0.5
2,512,670	+		GFF2491	0.24	-0.2
2,512,671	-		GFF2491	0.24	-0.9
2,512,671	-		GFF2491	0.24	-1.1
2,512,671	-		GFF2491	0.24	-1.4
2,512,701	-		GFF2491	0.27	+0.8
2,512,719	-		GFF2491	0.30	-1.5
2,512,719	-		GFF2491	0.30	-1.2
2,512,762	+		GFF2491	0.35	+0.5
2,512,774	+		GFF2491	0.36	-0.2
2,512,780	-		GFF2491	0.37	-0.8
2,512,784	+		GFF2491	0.38	-0.9
2,512,784	+		GFF2491	0.38	-1.4
2,512,792	-		GFF2491	0.39	-0.6
2,512,803	+		GFF2491	0.40	-0.9
2,512,830	+		GFF2491	0.43	-1.2
2,512,887	+		GFF2491	0.50	-1.7
2,512,897	-		GFF2491	0.51	-1.4
2,512,899	-		GFF2491	0.52	-1.1
2,512,914	+		GFF2491	0.54	-0.6
2,512,918	-		GFF2491	0.54	-0.9
2,512,918	-		GFF2491	0.54	-1.1
2,512,922	-		GFF2491	0.55	-1.2
2,512,931	+		GFF2491	0.56	-0.4
2,512,943	+		GFF2491	0.57	-0.4
2,512,951	-		GFF2491	0.58	-0.7
2,512,952	+		GFF2491	0.58	-0.5
2,512,962	+		GFF2491	0.59	-0.4
2,512,975	-		GFF2491	0.61	-1.1
2,512,983	+		GFF2491	0.62	-0.9
2,513,009	+		GFF2491	0.65	-0.6
2,513,010	-		GFF2491	0.65	-0.2
2,513,010	-		GFF2491	0.65	-0.9
2,513,023	+		GFF2491	0.67	-2.0
2,513,033	-		GFF2491	0.68	-1.4
2,513,033	-		GFF2491	0.68	-1.0
2,513,052	-		GFF2491	0.70	-0.7
2,513,136	-		GFF2491	0.81	-0.7
2,513,141	+		GFF2491	0.81	-0.8
2,513,147	-		GFF2491	0.82	-0.6
2,513,155	-		GFF2491	0.83	-0.5
2,513,196	+		GFF2491	0.88	-0.6
2,513,216	-				-1.9
2,513,300	-				-0.2
2,513,308	+				-1.2