Strain Fitness in Sphingobium sp. HT1-2 around GFF2389

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,409,383	+		GFF2387	0.72	-1.2
2,409,419	+		GFF2387	0.74	+0.7
2,409,419	+		GFF2387	0.74	-0.4
2,409,419	+		GFF2387	0.74	+0.2
2,409,427	-		GFF2387	0.75	-0.7
2,409,429	+		GFF2387	0.75	+0.8
2,409,429	+		GFF2387	0.75	+1.2
2,409,429	+		GFF2387	0.75	+0.1
2,409,429	+		GFF2387	0.75	+0.5
2,409,429	+		GFF2387	0.75	-0.6
2,409,432	+		GFF2387	0.75	-0.6
2,409,432	+		GFF2387	0.75	-0.4
2,409,434	+		GFF2387	0.75	-0.7
2,409,434	+		GFF2387	0.75	-1.0
2,409,434	+		GFF2387	0.75	+0.8
2,409,434	+		GFF2387	0.75	-0.2
2,409,437	-		GFF2387	0.75	-0.2
2,409,437	-		GFF2387	0.75	+0.1
2,409,437	-		GFF2387	0.75	+0.5
2,409,437	-		GFF2387	0.75	+0.8
2,409,437	-		GFF2387	0.75	+1.2
2,409,442	-		GFF2387	0.75	-1.2
2,409,552	+		GFF2387	0.81	-1.8
2,409,555	-		GFF2387	0.82	-0.6
2,409,555	-		GFF2387	0.82	+0.8
2,409,555	-		GFF2387	0.82	+1.0
2,409,563	-		GFF2387	0.82	-0.2
2,409,576	+		GFF2387	0.83	-0.9
2,409,576	+		GFF2387	0.83	-0.7
2,409,576	+		GFF2387	0.83	+0.2
2,409,576	+		GFF2387	0.83	-0.9
2,409,584	-		GFF2387	0.83	-1.1
2,409,584	-		GFF2387	0.83	+1.9
2,409,584	-		GFF2387	0.83	-1.0
2,409,587	+		GFF2387	0.83	-0.9
2,409,587	+		GFF2387	0.83	-1.4
2,409,587	+		GFF2387	0.83	-0.5
2,409,587	+		GFF2387	0.83	-1.1
2,409,595	-		GFF2387	0.84	-0.3
2,409,595	-		GFF2387	0.84	+1.0
2,409,595	-		GFF2387	0.84	-0.3
2,409,600	-		GFF2387	0.84	-0.2
2,409,605	-		GFF2387	0.84	-1.0
2,409,605	-		GFF2387	0.84	-1.1
2,409,605	-		GFF2387	0.84	-2.0
2,409,616	-		GFF2387	0.85	+1.2
2,409,646	+		GFF2387	0.86	-0.9
2,409,646	+		GFF2387	0.86	+0.6
2,409,648	-		GFF2387	0.87	-0.4
2,409,654	-		GFF2387	0.87	-0.9
2,409,654	-		GFF2387	0.87	-0.4
2,409,654	-		GFF2387	0.87	-0.4
2,409,654	-		GFF2387	0.87	+0.6
2,409,682	-		GFF2387	0.88	+0.5
2,409,692	+		GFF2387	0.89	-0.3
2,409,714	+				+0.8
2,409,750	-				-0.8
2,409,773	-				+0.6
2,409,777	-				-0.4
2,409,796	+				+0.6
2,409,804	+				-1.1
2,409,809	+				-0.0
2,409,884	+				+0.4
2,409,888	+				+0.2
2,409,896	-				+0.1
2,409,898	+				-1.6
2,409,910	+				+0.4
2,409,918	+				-1.5
2,409,918	+				-0.9
2,409,918	+				-1.6
2,409,924	-				+0.5
2,409,924	-				-0.4
2,409,926	-				-0.1
2,409,926	-				+0.2
2,409,926	-				+0.4
2,409,936	-				-2.1
2,409,943	-				-0.2
2,409,946	-				+0.2
2,409,962	+				-1.6
2,409,970	-				-0.4
2,409,973	+				+0.1
2,409,996	+				-0.2
2,410,017	-		GFF2388	0.15	-0.8
2,410,017	-		GFF2388	0.15	+0.4
2,410,036	+		GFF2388	0.19	-0.4
2,410,054	+		GFF2388	0.24	-0.5
2,410,112	+		GFF2388	0.38	-0.2
2,410,115	-		GFF2388	0.38	+0.4
2,410,148	+		GFF2388	0.46	+0.3
2,410,212	+		GFF2388	0.62	+0.1
2,410,219	+		GFF2388	0.64	+0.4
2,410,219	+		GFF2388	0.64	-0.9
2,410,222	+		GFF2388	0.64	-0.6
2,410,227	+		GFF2388	0.66	-1.1
2,410,227	-		GFF2388	0.66	+0.5
2,410,227	-		GFF2388	0.66	-0.9
2,410,227	-		GFF2388	0.66	+0.1
2,410,227	-		GFF2388	0.66	-1.2
2,410,232	+		GFF2388	0.67	-1.5
2,410,235	-		GFF2388	0.68	-1.3
2,410,240	-		GFF2388	0.69	+1.4
2,410,269	+		GFF2388	0.76	-0.2
2,410,295	+		GFF2388	0.82	+0.2
2,410,297	+		GFF2388	0.83	-1.8
2,410,311	-		GFF2388	0.86	-0.1
2,410,312	+		GFF2388	0.86	-0.7
2,410,313	-		GFF2388	0.87	+0.7
2,410,339	+				-0.9
2,410,339	+				-0.2
2,410,339	+				+1.4
2,410,339	+				+0.4
2,410,344	-				-2.6
2,410,345	-				-0.7
2,410,347	-				+0.3
2,410,347	-				+0.1
2,410,349	-				-1.6
2,410,361	+				-0.5
2,410,362	+				-0.5
2,410,369	-				+0.8
2,410,381	+				-0.7
2,410,389	-				+1.0
2,410,413	+				-1.0
2,410,426	+				+0.6
2,410,431	+				+0.9
2,410,437	+				-0.4
2,410,445	-				+0.8
2,410,445	-				-0.6
2,410,445	-				+0.8
2,410,445	-				+1.0
2,410,445	-				+2.0
2,410,445	-				+0.6
2,410,448	-				-0.4
2,410,449	-				-0.9
2,410,453	-				-0.4
2,410,461	-				-0.2
2,410,545	+		GFF2389	0.11	-0.8
2,410,552	+		GFF2389	0.11	-0.2
2,410,552	-		GFF2389	0.11	-1.5
2,410,553	-		GFF2389	0.12	-0.9
2,410,560	-		GFF2389	0.12	-1.1
2,410,560	-		GFF2389	0.12	+0.6
2,410,570	-		GFF2389	0.13	-0.4
2,410,638	+		GFF2389	0.17	-0.4
2,410,690	+		GFF2389	0.20	-0.2
2,410,728	-		GFF2389	0.22	+0.4
2,410,783	-		GFF2389	0.26	-0.5
2,410,804	+		GFF2389	0.27	+0.5
2,410,805	-		GFF2389	0.27	+1.0
2,410,946	+		GFF2389	0.36	-0.2
2,410,957	+		GFF2389	0.37	-1.9
2,410,957	+		GFF2389	0.37	-1.4
2,410,957	+		GFF2389	0.37	+1.9
2,410,957	+		GFF2389	0.37	+0.5
2,410,957	+		GFF2389	0.37	-0.4
2,410,962	+		GFF2389	0.37	-0.7
2,410,965	-		GFF2389	0.37	-1.0
2,410,965	-		GFF2389	0.37	-0.2
2,410,980	+		GFF2389	0.38	-0.8
2,410,980	+		GFF2389	0.38	-1.0
2,410,980	+		GFF2389	0.38	-0.2
2,410,980	+		GFF2389	0.38	-1.5
2,410,988	-		GFF2389	0.39	-0.7
2,410,988	-		GFF2389	0.39	-0.5
2,410,990	-		GFF2389	0.39	-0.1
2,410,993	+		GFF2389	0.39	+1.1
2,411,071	+		GFF2389	0.44	-1.1
2,411,079	-		GFF2389	0.44	+0.8
2,411,085	-		GFF2389	0.45	-1.9
2,411,092	-		GFF2389	0.45	-0.2
2,411,138	+		GFF2389	0.48	+0.5
2,411,138	+		GFF2389	0.48	-0.9
2,411,138	+		GFF2389	0.48	-0.7
2,411,138	+		GFF2389	0.48	-1.3
2,411,138	+		GFF2389	0.48	+0.3
2,411,138	+		GFF2389	0.48	-0.5
2,411,138	+		GFF2389	0.48	-0.6
2,411,138	+		GFF2389	0.48	+1.8
2,411,138	+		GFF2389	0.48	-0.5
2,411,138	+		GFF2389	0.48	-0.2
2,411,138	+		GFF2389	0.48	-0.6
2,411,146	-		GFF2389	0.49	-0.5
2,411,146	-		GFF2389	0.49	+0.4
2,411,146	-		GFF2389	0.49	+0.8
2,411,146	-		GFF2389	0.49	-0.2
2,411,146	-		GFF2389	0.49	-0.0
2,411,146	-		GFF2389	0.49	+1.2
2,411,146	-		GFF2389	0.49	-1.0
2,411,148	+		GFF2389	0.49	+0.4
2,411,163	-		GFF2389	0.50	-0.4
2,411,234	+		GFF2389	0.54	-0.7
2,411,289	-		GFF2389	0.57	-1.7
2,411,289	-		GFF2389	0.57	+0.4
2,411,310	-		GFF2389	0.59	+0.6
2,411,371	-		GFF2389	0.63	-0.4
2,411,372	-		GFF2389	0.63	-0.7
2,411,434	-		GFF2389	0.67	-1.5
2,411,434	-		GFF2389	0.67	-0.9
2,411,437	+		GFF2389	0.67	-1.8
2,411,472	+		GFF2389	0.69	-0.3
2,411,511	+		GFF2389	0.71	+0.6
2,411,516	+		GFF2389	0.72	-0.4
2,411,516	+		GFF2389	0.72	-0.9
2,411,524	-		GFF2389	0.72	-0.2
2,411,538	-		GFF2389	0.73	-0.8
2,411,540	+		GFF2389	0.73	-0.4
2,411,545	+		GFF2389	0.73	-1.4
2,411,548	-		GFF2389	0.74	-0.9
2,411,548	-		GFF2389	0.74	-1.2
2,411,552	-		GFF2389	0.74	-0.5
2,411,553	-		GFF2389	0.74	-0.4
2,411,622	+		GFF2389	0.78	+0.4
2,411,628	-		GFF2389	0.79	-1.6
2,411,650	+		GFF2389	0.80	-1.0
2,411,664	+		GFF2389	0.81	+0.4
2,411,665	-		GFF2389	0.81	-1.6
2,411,779	+		GFF2389	0.88	-1.5
2,411,794	+		GFF2389	0.89	-0.9
2,411,794	+		GFF2389	0.89	+0.8
2,411,802	-		GFF2389	0.90	-0.5
2,411,815	+				-0.9
2,411,855	-				-1.0
2,411,881	+				-1.1
2,411,896	+				+0.6
2,411,898	+				-0.6
2,411,901	+				-1.0
2,411,906	-				-0.8
2,411,909	-				-0.6
2,411,916	-				-1.7
2,411,919	+				-0.2
2,411,943	-				+0.1
2,411,949	+				-0.4
2,411,949	+				+0.4
2,411,949	+				+0.2
2,411,954	+				-0.6
2,411,957	-				-0.2
2,411,964	+				-0.5
2,411,965	+				-0.6
2,411,972	-				-0.8
2,411,972	-				-1.5
2,411,973	-				+1.4
2,411,973	-				-0.2
2,411,973	-				+0.5
2,411,979	-				-0.2
2,411,996	+				+0.4
2,411,996	+				-0.2
2,411,999	-				+1.5
2,412,006	+				-0.1
2,412,006	+				-0.5
2,412,009	-				-1.2
2,412,014	-				-0.4
2,412,016	+				-0.5
2,412,024	-				-0.9
2,412,033	-				-1.5
2,412,033	-				+0.6
2,412,034	+				-0.4
2,412,034	+				-1.0
2,412,034	+				-1.4
2,412,042	-				-0.2
2,412,042	-				-1.8
2,412,044	+		GFF2390	0.10	-0.2
2,412,044	+		GFF2390	0.10	-0.9
2,412,044	+		GFF2390	0.10	-0.1
2,412,052	-		GFF2390	0.13	-1.1
2,412,071	+		GFF2390	0.18	-0.4
2,412,079	-		GFF2390	0.21	-0.1
2,412,079	-		GFF2390	0.21	+0.6
2,412,121	+		GFF2390	0.33	-0.7
2,412,131	-		GFF2390	0.36	-0.2
2,412,157	+		GFF2390	0.44	-1.0
2,412,165	+		GFF2390	0.46	-0.4
2,412,172	+		GFF2390	0.48	+0.7
2,412,172	+		GFF2390	0.48	+1.9
2,412,177	+		GFF2390	0.50	-0.2
2,412,185	-		GFF2390	0.52	+0.2
2,412,191	-		GFF2390	0.54	+0.6
2,412,200	+		GFF2390	0.56	-0.9
2,412,200	+		GFF2390	0.56	+0.6
2,412,200	+		GFF2390	0.56	-0.3
2,412,208	-		GFF2390	0.59	+0.1
2,412,208	-		GFF2390	0.59	+0.5
2,412,208	-		GFF2390	0.59	-1.2
2,412,219	+		GFF2390	0.62	-0.1
2,412,258	+		GFF2390	0.73	+1.2
2,412,266	-		GFF2390	0.76	-0.3
2,412,270	+		GFF2390	0.77	-1.3
2,412,396	-				-0.4
2,412,401	-				-1.5
2,412,420	+				-0.4
2,412,428	-				-0.0
2,412,450	+				+1.4
2,412,456	+				-1.0
2,412,457	-				+0.0
2,412,460	+				-1.6
2,412,460	+				-1.0
2,412,461	+				-1.9
2,412,468	-		GFF2391	0.10	-1.1
2,412,468	-		GFF2391	0.10	+1.4
2,412,470	+		GFF2391	0.11	-1.4
2,412,480	+		GFF2391	0.11	+1.1
2,412,484	-		GFF2391	0.12	+0.1
2,412,521	-		GFF2391	0.15	-0.6
2,412,531	+		GFF2391	0.16	-0.1
2,412,531	+		GFF2391	0.16	-0.7
2,412,531	+		GFF2391	0.16	-0.2
2,412,531	-		GFF2391	0.16	+1.3
2,412,539	-		GFF2391	0.17	-0.1
2,412,539	-		GFF2391	0.17	-0.2
2,412,539	-		GFF2391	0.17	+0.1
2,412,543	-		GFF2391	0.17	-1.0
2,412,555	+		GFF2391	0.18	+0.7
2,412,580	-		GFF2391	0.20	+1.5
2,412,594	+		GFF2391	0.21	+0.2
2,412,611	+		GFF2391	0.23	-1.4
2,412,619	-		GFF2391	0.24	-1.1
2,412,621	-		GFF2391	0.24	+0.1
2,412,623	+		GFF2391	0.24	-0.1
2,412,623	+		GFF2391	0.24	-0.0
2,412,623	+		GFF2391	0.24	-0.5
2,412,631	-		GFF2391	0.25	-1.2
2,412,631	-		GFF2391	0.25	+0.1
2,412,638	+		GFF2391	0.25	-0.4
2,412,638	+		GFF2391	0.25	-0.9
2,412,638	+		GFF2391	0.25	+0.4
2,412,646	-		GFF2391	0.26	-0.8
2,412,646	-		GFF2391	0.26	+0.1
2,412,646	-		GFF2391	0.26	-1.3
2,412,646	-		GFF2391	0.26	+0.1
2,412,651	-		GFF2391	0.26	-1.9
2,412,693	+		GFF2391	0.30	-0.4
2,412,701	-		GFF2391	0.31	+0.8
2,412,703	+		GFF2391	0.31	-1.4
2,412,703	+		GFF2391	0.31	-0.2
2,412,703	+		GFF2391	0.31	-1.2
2,412,703	+		GFF2391	0.31	+0.1
2,412,703	+		GFF2391	0.31	-1.4
2,412,709	-		GFF2391	0.31	+0.9
2,412,711	-		GFF2391	0.32	-0.5
2,412,711	-		GFF2391	0.32	-1.3
2,412,716	-		GFF2391	0.32	+0.2
2,412,716	-		GFF2391	0.32	-0.7
2,412,724	+		GFF2391	0.33	-0.3
2,412,724	+		GFF2391	0.33	-1.9
2,412,724	+		GFF2391	0.33	-0.4
2,412,732	-		GFF2391	0.33	+1.5
2,412,751	+		GFF2391	0.35	+1.9
2,412,780	-		GFF2391	0.38	-0.4
2,412,795	-		GFF2391	0.39	-0.6
2,412,800	-		GFF2391	0.39	-1.4
2,412,855	+		GFF2391	0.44	-0.4
2,412,873	-		GFF2391	0.46	-1.1
2,412,889	-		GFF2391	0.47	-0.6
2,412,954	+		GFF2391	0.53	-1.2
2,412,954	+		GFF2391	0.53	+0.4
2,412,954	+		GFF2391	0.53	-1.3