Strain Fitness in Sphingobium sp. HT1-2 around GFF2372

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,394,480	-		GFF2370	0.70	-1.6
2,394,504	+		GFF2370	0.72	-1.0
2,394,543	+		GFF2370	0.74	+0.2
2,394,548	+		GFF2370	0.74	-2.2
2,394,548	+		GFF2370	0.74	-1.9
2,394,613	+		GFF2370	0.79	-1.4
2,394,621	-		GFF2370	0.79	-0.6
2,394,646	-		GFF2370	0.81	-0.8
2,394,658	-		GFF2370	0.82	+0.3
2,394,658	-		GFF2370	0.82	-0.3
2,394,751	+		GFF2370	0.88	-0.3
2,394,756	+		GFF2370	0.88	-1.7
2,394,764	-		GFF2370	0.89	-1.0
2,394,769	-		GFF2370	0.89	+0.5
2,394,774	-		GFF2370	0.89	+0.5
2,394,779	+		GFF2370	0.90	-1.2
2,394,779	-		GFF2370	0.90	-1.0
2,394,799	+				-1.3
2,394,871	-				-1.9
2,394,880	+				+1.2
2,394,899	+				-1.8
2,394,899	+				+0.0
2,394,899	+				-1.5
2,394,965	+				-0.3
2,395,010	-				-2.3
2,395,024	+				-0.2
2,395,058	-				+0.2
2,395,129	+				-0.3
2,395,129	+				+0.0
2,395,242	-		GFF2371	0.25	-0.4
2,395,320	-		GFF2371	0.58	-1.3
2,395,323	+		GFF2371	0.59	-0.6
2,395,331	-		GFF2371	0.63	-0.2
2,395,338	+		GFF2371	0.66	+0.5
2,395,338	-		GFF2371	0.66	-0.3
2,395,346	-		GFF2371	0.69	+0.4
2,395,377	+		GFF2371	0.82	+1.4
2,395,385	-		GFF2371	0.86	-1.6
2,395,395	-				-0.6
2,395,405	-				-0.4
2,395,406	+				+0.3
2,395,420	-				+1.6
2,395,429	+				-0.6
2,395,437	-				+0.7
2,395,516	-		GFF2372	0.11	+0.8
2,395,528	-		GFF2372	0.12	+0.9
2,395,540	-		GFF2372	0.14	-0.8
2,395,583	+		GFF2372	0.20	-1.8
2,395,588	+		GFF2372	0.21	-0.5
2,395,588	+		GFF2372	0.21	+0.5
2,395,590	-		GFF2372	0.21	+1.8
2,395,591	-		GFF2372	0.21	-0.7
2,395,593	+		GFF2372	0.21	+2.7
2,395,593	+		GFF2372	0.21	+0.5
2,395,601	-		GFF2372	0.22	+0.3
2,395,603	+		GFF2372	0.23	-1.5
2,395,618	+		GFF2372	0.25	-0.2
2,395,628	+		GFF2372	0.26	+2.5
2,395,641	-		GFF2372	0.28	-0.7
2,395,702	+		GFF2372	0.36	-1.4
2,395,737	+		GFF2372	0.41	-0.6
2,395,750	+		GFF2372	0.43	+1.7
2,395,780	+		GFF2372	0.47	-0.8
2,395,789	-		GFF2372	0.48	+0.8
2,395,793	-		GFF2372	0.49	+0.8
2,395,794	+		GFF2372	0.49	-1.2
2,395,802	-		GFF2372	0.50	+0.5
2,395,824	-		GFF2372	0.53	+0.2
2,395,826	+		GFF2372	0.53	+1.3
2,395,829	-		GFF2372	0.54	-0.8
2,395,836	+		GFF2372	0.55	-0.5
2,395,839	-		GFF2372	0.55	+0.5
2,395,839	-		GFF2372	0.55	+0.5
2,395,844	-		GFF2372	0.56	+1.5
2,395,878	+		GFF2372	0.60	+1.4
2,395,882	+		GFF2372	0.61	-1.5
2,395,893	+		GFF2372	0.62	-0.1
2,395,901	-		GFF2372	0.64	-0.8
2,395,906	+		GFF2372	0.64	-0.8
2,395,914	+		GFF2372	0.65	+0.4
2,395,914	+		GFF2372	0.65	-0.5
2,395,917	-		GFF2372	0.66	+1.9
2,395,922	-		GFF2372	0.66	+0.3
2,395,940	+		GFF2372	0.69	-0.5
2,395,949	+		GFF2372	0.70	+0.1
2,395,957	-		GFF2372	0.71	-1.4
2,395,966	-		GFF2372	0.72	+1.4
2,395,968	+		GFF2372	0.73	+0.6
2,395,976	-		GFF2372	0.74	+1.2
2,395,993	+		GFF2372	0.76	-0.1
2,396,015	-		GFF2372	0.79	+0.1
2,396,033	-		GFF2372	0.82	-1.2
2,396,043	+		GFF2372	0.83	+0.2
2,396,043	+		GFF2372	0.83	+0.4
2,396,043	+		GFF2372	0.83	+0.8
2,396,043	+		GFF2372	0.83	-0.6
2,396,043	+		GFF2372	0.83	-0.0
2,396,049	+		GFF2372	0.84	-1.1
2,396,049	+		GFF2372	0.84	+0.9
2,396,051	-		GFF2372	0.84	-1.7
2,396,051	-		GFF2372	0.84	-0.6
2,396,051	-		GFF2372	0.84	-0.2
2,396,051	-		GFF2372	0.84	+0.2
2,396,051	-		GFF2372	0.84	-0.3
2,396,051	-		GFF2372	0.84	-1.3
2,396,051	-		GFF2372	0.84	-0.7
2,396,051	-		GFF2372	0.84	-0.8
2,396,054	+		GFF2372	0.84	+0.8
2,396,054	+		GFF2372	0.84	-0.3
2,396,054	+		GFF2372	0.84	+2.1
2,396,056	-		GFF2372	0.85	+0.9
2,396,057	-		GFF2372	0.85	+1.0
2,396,057	-		GFF2372	0.85	+0.4
2,396,057	-		GFF2372	0.85	+0.9
2,396,059	+		GFF2372	0.85	-0.6
2,396,062	-		GFF2372	0.86	-0.7
2,396,062	-		GFF2372	0.86	-0.7
2,396,062	-		GFF2372	0.86	+0.4
2,396,062	-		GFF2372	0.86	+0.3
2,396,062	-		GFF2372	0.86	+2.5
2,396,094	+				-0.5
2,396,094	+				+0.5
2,396,096	-				-1.5
2,396,099	+				-0.2
2,396,099	+				-0.4
2,396,099	+				-0.2
2,396,099	+				-0.0
2,396,107	-				+1.0
2,396,107	-				-1.1
2,396,109	+				+2.6
2,396,109	+				+0.2
2,396,109	+				+0.8
2,396,109	+				-1.7
2,396,109	+				+1.2
2,396,109	+				-0.9
2,396,109	+				-0.6
2,396,117	-				-1.0
2,396,117	-				-0.1
2,396,117	-				-1.4
2,396,121	-				+0.4
2,396,133	+				-1.5
2,396,136	+				+0.5
2,396,144	-				-1.4
2,396,151	+				+0.4
2,396,151	+				-1.1
2,396,154	-				+0.2
2,396,159	-				-1.4
2,396,159	-				-2.2
2,396,159	-				+0.3
2,396,167	+				-1.4
2,396,172	+				-0.6
2,396,177	+				+0.3
2,396,204	-				+0.3
2,396,215	+				+1.1
2,396,223	-				-1.2
2,396,223	-				-1.1
2,396,259	+		GFF2373	0.12	-0.9
2,396,259	+		GFF2373	0.12	-0.9
2,396,259	+		GFF2373	0.12	+0.5
2,396,264	+		GFF2373	0.12	-1.1
2,396,267	-		GFF2373	0.13	+0.9
2,396,267	-		GFF2373	0.13	+1.0
2,396,267	-		GFF2373	0.13	-1.4
2,396,288	+		GFF2373	0.15	+0.3
2,396,302	-		GFF2373	0.17	+1.0
2,396,316	+		GFF2373	0.19	+0.1
2,396,332	-		GFF2373	0.21	+2.2
2,396,373	-		GFF2373	0.26	+0.5
2,396,409	+		GFF2373	0.31	+0.1
2,396,420	+		GFF2373	0.32	-0.2
2,396,467	+		GFF2373	0.39	+1.0
2,396,494	-		GFF2373	0.42	-0.4
2,396,566	-		GFF2373	0.51	+0.5
2,396,579	+		GFF2373	0.53	-0.1
2,396,615	+		GFF2373	0.58	-0.2
2,396,618	-		GFF2373	0.58	+1.2
2,396,658	+		GFF2373	0.63	-0.9
2,396,668	+		GFF2373	0.65	-0.0
2,396,671	-		GFF2373	0.65	+2.1
2,396,700	-		GFF2373	0.69	-1.0
2,396,722	-		GFF2373	0.72	+0.4
2,396,738	+		GFF2373	0.74	+0.8
2,396,746	-		GFF2373	0.75	+0.1
2,396,817	-		GFF2373	0.84	+0.5
2,396,817	-		GFF2373	0.84	-1.3
2,396,838	-		GFF2373	0.87	-0.3
2,396,860	-		GFF2373	0.89	-0.9
2,396,944	-				+0.7
2,396,954	-				-0.5
2,396,955	-				+0.0
2,396,976	+				-0.4
2,396,981	+				-0.5
2,396,986	+				-1.6
2,397,037	+				-0.2
2,397,076	+				+0.4
2,397,094	-				-0.1
2,397,098	+				-0.5
2,397,166	+		GFF2374	0.14	+0.2