Strain Fitness in Sphingobium sp. HT1-2 around GFF2166

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,186,091	-				+1.8
2,186,091	-				+0.8
2,186,115	+				-0.7
2,186,123	+				+1.0
2,186,123	+				-1.8
2,186,123	+				-1.6
2,186,131	-				-1.5
2,186,169	+				+0.8
2,186,188	+				+0.2
2,186,197	+				+1.0
2,186,203	+				-1.1
2,186,204	+				-0.8
2,186,205	+				-0.7
2,186,205	+				-0.7
2,186,205	-				-0.2
2,186,206	-				-1.4
2,186,206	-				-2.3
2,186,212	-				-0.9
2,186,213	-				-1.9
2,186,213	-				+0.7
2,186,225	-				-0.7
2,186,260	-		GFF2163	0.33	-0.2
2,186,265	-		GFF2163	0.36	-1.3
2,186,267	+		GFF2163	0.38	-0.2
2,186,267	+		GFF2163	0.38	-1.4
2,186,267	+		GFF2163	0.38	+0.2
2,186,275	-		GFF2163	0.44	+0.2
2,186,275	-		GFF2163	0.44	-1.2
2,186,275	-		GFF2163	0.44	-1.2
2,186,275	-		GFF2163	0.44	-1.2
2,186,292	-		GFF2163	0.57	+0.2
2,186,307	-		GFF2163	0.69	-1.6
2,186,322	-		GFF2163	0.81	-1.9
2,186,323	-		GFF2163	0.81	+0.7
2,186,328	-		GFF2163	0.85	-0.3
2,186,336	+				-0.2
2,186,336	+				-0.8
2,186,336	+				+0.1
2,186,344	-				+0.2
2,186,344	-				-0.2
2,186,344	-				-0.1
2,186,364	-		GFF2164	0.11	+1.0
2,186,383	+		GFF2164	0.19	-1.3
2,186,391	-		GFF2164	0.23	-0.0
2,186,403	+		GFF2164	0.28	-0.0
2,186,411	-		GFF2164	0.31	-1.4
2,186,413	+		GFF2164	0.32	-1.4
2,186,413	+		GFF2164	0.32	+1.1
2,186,413	+		GFF2164	0.32	+0.7
2,186,413	+		GFF2164	0.32	-1.1
2,186,413	+		GFF2164	0.32	+0.4
2,186,421	-		GFF2164	0.35	-0.3
2,186,421	-		GFF2164	0.35	-1.7
2,186,439	-		GFF2164	0.43	-0.3
2,186,459	-		GFF2164	0.52	-0.5
2,186,483	+		GFF2164	0.62	+0.7
2,186,483	+		GFF2164	0.62	+0.9
2,186,483	+		GFF2164	0.62	-2.7
2,186,483	+		GFF2164	0.62	-0.7
2,186,483	+		GFF2164	0.62	+0.2
2,186,483	+		GFF2164	0.62	-2.0
2,186,483	+		GFF2164	0.62	+1.7
2,186,491	-		GFF2164	0.66	+0.1
2,186,491	-		GFF2164	0.66	+0.3
2,186,491	-		GFF2164	0.66	-1.3
2,186,506	+		GFF2164	0.72	+1.1
2,186,506	+		GFF2164	0.72	-1.1
2,186,506	+		GFF2164	0.72	-0.8
2,186,514	-		GFF2164	0.76	-0.2
2,186,514	-		GFF2164	0.76	-1.8
2,186,514	-		GFF2164	0.76	+0.2
2,186,514	-		GFF2164	0.76	-0.7
2,186,518	-		GFF2164	0.77	-1.5
2,186,526	+		GFF2164	0.81	-1.2
2,186,529	-		GFF2164	0.82	+0.7
2,186,529	-		GFF2164	0.82	-0.7
2,186,534	-		GFF2164	0.84	-1.3
2,186,539	-		GFF2164	0.87	+0.1
2,186,545	+		GFF2164	0.89	-1.0
2,186,545	+		GFF2164	0.89	-0.2
2,186,558	+				+0.8
2,186,563	+				+0.8
2,186,563	-				-0.8
2,186,591	+				-0.5
2,186,596	+				-0.4
2,186,599	-				+0.5
2,186,604	-		GFF2165	0.10	+0.1
2,186,613	-		GFF2165	0.12	-0.8
2,186,630	+		GFF2165	0.16	-1.5
2,186,640	+		GFF2165	0.19	-1.2
2,186,640	+		GFF2165	0.19	-0.4
2,186,645	+		GFF2165	0.20	-1.0
2,186,645	+		GFF2165	0.20	-0.8
2,186,645	+		GFF2165	0.20	-0.4
2,186,648	-		GFF2165	0.21	-0.4
2,186,648	-		GFF2165	0.21	+0.6
2,186,653	-		GFF2165	0.22	+1.1
2,186,653	-		GFF2165	0.22	+0.7
2,186,660	+		GFF2165	0.23	+0.4
2,186,660	+		GFF2165	0.23	-0.8
2,186,665	+		GFF2165	0.25	-0.0
2,186,665	+		GFF2165	0.25	-1.1
2,186,668	-		GFF2165	0.25	+1.4
2,186,668	-		GFF2165	0.25	-2.4
2,186,673	-		GFF2165	0.27	-0.8
2,186,673	-		GFF2165	0.27	+0.1
2,186,691	+		GFF2165	0.31	+0.7
2,186,699	-		GFF2165	0.33	+0.5
2,186,699	-		GFF2165	0.33	+1.4
2,186,699	-		GFF2165	0.33	-2.2
2,186,707	+		GFF2165	0.35	-0.9
2,186,707	+		GFF2165	0.35	+2.0
2,186,715	-		GFF2165	0.36	-1.3
2,186,728	-		GFF2165	0.39	+1.9
2,186,728	-		GFF2165	0.39	-0.8
2,186,736	+		GFF2165	0.41	+0.0
2,186,741	+		GFF2165	0.42	+0.4
2,186,749	-		GFF2165	0.44	+0.5
2,186,758	-		GFF2165	0.46	-1.7
2,186,781	+		GFF2165	0.52	-0.3
2,186,781	+		GFF2165	0.52	-0.2
2,186,781	+		GFF2165	0.52	-0.5
2,186,781	+		GFF2165	0.52	-1.1
2,186,781	+		GFF2165	0.52	-0.2
2,186,789	-		GFF2165	0.54	+0.5
2,186,789	-		GFF2165	0.54	-0.1
2,186,789	-		GFF2165	0.54	-0.7
2,186,789	-		GFF2165	0.54	-0.3
2,186,789	-		GFF2165	0.54	+0.4
2,186,803	-		GFF2165	0.57	+0.3
2,186,803	-		GFF2165	0.57	+1.1
2,186,803	-		GFF2165	0.57	+0.5
2,186,807	+		GFF2165	0.58	-0.7
2,186,813	-		GFF2165	0.59	-0.9
2,186,813	-		GFF2165	0.59	+0.7
2,186,820	+		GFF2165	0.61	-1.2
2,186,820	+		GFF2165	0.61	-0.7
2,186,839	-		GFF2165	0.65	-1.8
2,186,840	+		GFF2165	0.66	-0.7
2,186,848	+		GFF2165	0.68	+0.1
2,186,848	+		GFF2165	0.68	-1.0
2,186,848	+		GFF2165	0.68	+0.2
2,186,848	+		GFF2165	0.68	-1.1
2,186,848	-		GFF2165	0.68	-1.0
2,186,850	+		GFF2165	0.68	-0.5
2,186,856	+		GFF2165	0.69	+0.4
2,186,856	-		GFF2165	0.69	+0.3
2,186,883	+		GFF2165	0.76	+1.4
2,186,883	+		GFF2165	0.76	-0.1
2,186,891	-		GFF2165	0.78	-1.7
2,186,891	-		GFF2165	0.78	-1.8
2,186,894	+		GFF2165	0.78	+0.7
2,186,894	+		GFF2165	0.78	-1.0
2,186,894	+		GFF2165	0.78	-0.6
2,186,902	-		GFF2165	0.80	-0.5
2,186,902	-		GFF2165	0.80	-0.2
2,186,902	-		GFF2165	0.80	-2.1
2,186,914	+		GFF2165	0.83	-0.5
2,186,922	-		GFF2165	0.85	-1.5
2,186,932	-		GFF2165	0.87	-0.5
2,186,961	+				-0.7
2,186,961	+				+1.0
2,186,971	+				-0.3
2,186,974	-				-1.3
2,187,001	-				-0.8
2,187,078	-				-1.7
2,187,092	+				-0.7
2,187,100	-				+1.0
2,187,100	-				-0.0
2,187,103	+				+1.7
2,187,126	+		GFF2166	0.14	-1.8
2,187,134	-		GFF2166	0.17	-1.1
2,187,164	-		GFF2166	0.28	-0.8
2,187,169	+		GFF2166	0.30	-0.5
2,187,174	+		GFF2166	0.32	+0.1
2,187,175	+		GFF2166	0.33	+0.1
2,187,182	-		GFF2166	0.35	-1.7
2,187,203	+		GFF2166	0.43	-0.2
2,187,244	-		GFF2166	0.59	-1.5
2,187,271	-		GFF2166	0.69	-0.9
2,187,312	+		GFF2166	0.84	+1.2
2,187,320	-		GFF2166	0.88	+1.8
2,187,320	-		GFF2166	0.88	-0.6
2,187,320	-		GFF2166	0.88	-0.2
2,187,331	+				-1.1
2,187,339	-				-0.9
2,187,339	-				+0.4
2,187,339	-				-1.5
2,187,352	+				-0.6
2,187,356	+				-1.7
2,187,391	+				+0.7
2,187,447	+				+0.2
2,187,453	-				-1.5
2,187,460	+				-0.4
2,187,468	-				-1.8
2,187,470	+				+0.8
2,187,473	-				-0.0
2,187,473	-				+0.1
2,187,473	-				+0.2
2,187,473	-				-0.3
2,187,481	+				-1.2
2,187,485	-				-0.1
2,187,486	+				+0.7
2,187,486	+				+0.5
2,187,486	+				-0.3
2,187,486	+				-0.9
2,187,489	-				-0.6
2,187,494	-				-1.9
2,187,494	-				+0.4
2,187,494	-				-2.3
2,187,494	-				-1.2
2,187,494	-				-0.6
2,187,502	+				+0.2
2,187,503	+				+0.4
2,187,510	-				-1.5
2,187,510	-				+0.4
2,187,517	+				-0.9
2,187,524	+				-0.2
2,187,524	+				-2.0
2,187,524	+				-0.8
2,188,073	-				+0.3
2,188,074	-				-0.5
2,188,075	-				+1.2
2,188,082	+				-1.3
2,188,117	-				-1.1
2,188,120	-				-0.5
2,188,131	+				-0.8
2,188,139	-				-1.4
2,188,180	+				+0.1
2,188,231	-				-0.4
2,188,257	+				-0.2
2,188,257	+				-1.5
2,188,265	-				-0.6
2,188,265	-				-0.4
2,188,275	-				+0.8
2,188,275	-				-0.7
2,188,275	-				-0.5
2,188,287	+				+0.7
2,188,295	-				+0.2
2,188,296	-				-0.7
2,188,296	-				-0.4
2,188,296	-				-0.2
2,188,296	-				-1.2
2,188,296	-				+0.9
2,188,296	-				-0.8
2,188,296	-				-1.5
2,188,296	-				-0.1
2,188,296	-				-0.5
2,188,296	-				-0.7