Strain Fitness in Sphingobium sp. HT1-2 around GFF2048

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,085,360	-				-2.1
2,085,370	-				-0.5
2,085,370	-				-1.2
2,085,391	+				+0.0
2,085,399	-				+1.2
2,085,418	-				-0.1
2,085,418	-				-1.5
2,085,420	+				-0.3
2,085,420	+				-0.7
2,085,428	-				+0.4
2,085,886	-				+0.3
2,085,899	+				+1.4
2,085,899	+				+0.1
2,085,899	+				+0.4
2,085,904	+				-2.1
2,085,904	+				-1.8
2,085,904	+				-0.1
2,085,914	+				-0.2
2,085,914	+				+0.5
2,085,914	+				+1.0
2,085,914	+				+0.4
2,085,917	-				+0.0
2,085,917	-				+0.8
2,085,917	-				-0.9
2,085,917	-				+1.1
2,085,922	-				-0.5
2,085,922	-				+0.3
2,085,922	-				-0.5
2,085,922	-				-1.0
2,085,922	-				+1.5
2,085,922	-				-0.1
2,085,922	-				+0.2
2,085,922	-				-0.7
2,085,922	-				-0.7
2,085,922	-				-0.1
2,085,922	-				+0.2
2,085,922	-				+0.2
2,085,922	-				-0.6
2,085,926	+				-0.7
2,085,942	-				+0.3
2,085,986	+				-1.8
2,085,987	+				-0.8
2,085,995	-				+0.5
2,085,995	-				-0.5
2,085,995	-				-1.1
2,085,995	-				-0.1
2,086,055	+				-0.2
2,086,055	+				-1.0
2,086,063	-				-0.6
2,086,063	-				-2.3
2,086,065	+				-0.0
2,086,115	-				+0.8
2,086,120	+				-1.5
2,086,128	-				+1.0
2,086,128	-				-0.2
2,086,158	+				-0.7
2,086,163	+				-0.8
2,086,173	-				-0.5
2,086,176	-				-1.4
2,086,178	-				-1.0
2,086,178	-				+1.7
2,086,199	-				+0.1
2,086,213	+				-1.3
2,086,221	+				-1.5
2,086,221	+				-0.6
2,086,256	-				-1.7
2,086,286	+				+0.8
2,086,286	+				-0.6
2,086,294	-				+1.0
2,086,294	-				-1.3
2,086,294	-				-0.4
2,086,329	+				-0.5
2,086,365	+				-0.7
2,086,368	-				+0.2
2,086,371	-				-0.2
2,086,371	-				-1.4
2,086,371	-				+0.7
2,086,373	-				+0.2
2,086,378	+				+0.0
2,086,418	-		GFF2048	0.16	+0.1
2,086,435	-		GFF2048	0.21	-0.8
2,086,449	-		GFF2048	0.24	-1.6
2,086,468	-		GFF2048	0.29	-0.6
2,086,475	-		GFF2048	0.30	-1.0
2,086,531	+		GFF2048	0.44	+0.2
2,086,533	-		GFF2048	0.45	-0.9
2,086,533	-		GFF2048	0.45	-1.6
2,086,544	-		GFF2048	0.47	-0.7
2,086,547	+		GFF2048	0.48	-2.0
2,086,547	+		GFF2048	0.48	-0.3
2,086,569	+		GFF2048	0.53	-0.0
2,086,569	+		GFF2048	0.53	+0.2
2,086,575	+		GFF2048	0.55	-0.2
2,086,577	-		GFF2048	0.55	-1.1
2,086,632	+		GFF2048	0.69	+0.8
2,086,632	+		GFF2048	0.69	+1.1
2,086,635	-		GFF2048	0.70	+0.9
2,086,640	-		GFF2048	0.71	+1.8
2,086,640	-		GFF2048	0.71	+0.3
2,086,667	+		GFF2048	0.77	-0.7
2,086,692	+		GFF2048	0.84	-0.7
2,086,700	-		GFF2048	0.86	+0.7
2,086,707	+		GFF2048	0.87	-0.3
2,086,717	+		GFF2048	0.90	-1.1
2,086,719	-				+0.4
2,086,727	+				+0.1
2,086,735	-				-0.3
2,086,735	-				-0.5
2,086,735	-				+0.2
2,086,778	+				-0.1
2,086,804	-				-0.9
2,086,804	-				-0.3
2,086,804	-				-2.4
2,086,828	+				-1.2
2,086,828	+				+0.1
2,086,830	+				+0.2
2,086,836	-				-0.1
2,086,836	-				-1.0
2,086,836	-				+0.6
2,086,843	-				-1.1
2,086,868	-				-0.9
2,086,870	+				-0.9
2,086,870	+				-0.1
2,086,870	+				-1.4
2,086,873	-				-0.3
2,086,878	-				-1.5
2,086,883	-				+1.7
2,086,883	-				+0.9
2,086,883	-				+0.6
2,086,886	-				-0.1
2,086,898	+				-0.9
2,086,898	+				+0.8
2,086,900	-				-0.6
2,086,902	+				-0.8
2,086,905	-		GFF2049	0.10	-0.4
2,086,905	-		GFF2049	0.10	-1.1
2,086,906	-		GFF2049	0.10	-0.3
2,086,913	-		GFF2049	0.11	-0.7
2,086,919	-		GFF2049	0.12	-1.2
2,086,919	-		GFF2049	0.12	-1.6
2,086,919	-		GFF2049	0.12	+0.2
2,086,952	+		GFF2049	0.16	+0.6
2,086,959	+		GFF2049	0.17	-1.9
2,086,959	+		GFF2049	0.17	-1.1
2,086,967	-		GFF2049	0.18	-1.7
2,086,967	-		GFF2049	0.18	+0.2
2,086,967	-		GFF2049	0.18	+0.6
2,086,967	-		GFF2049	0.18	-0.6
2,086,978	+		GFF2049	0.20	+0.1
2,086,986	-		GFF2049	0.21	-1.3
2,086,992	+		GFF2049	0.22	-0.7
2,086,992	+		GFF2049	0.22	-0.7
2,087,004	+		GFF2049	0.23	+0.3
2,087,008	-		GFF2049	0.24	-0.6
2,087,032	-		GFF2049	0.27	-0.6
2,087,032	-		GFF2049	0.27	+1.0
2,087,093	-		GFF2049	0.35	-1.2
2,087,120	+		GFF2049	0.38	-0.3
2,087,123	-		GFF2049	0.39	-0.2
2,087,181	+		GFF2049	0.46	-0.2
2,087,183	-		GFF2049	0.47	-0.2
2,087,183	-		GFF2049	0.47	-1.0
2,087,189	-		GFF2049	0.47	-1.8
2,087,189	-		GFF2049	0.47	-0.8
2,087,189	-		GFF2049	0.47	-0.9
2,087,211	-		GFF2049	0.50	+0.3
2,087,216	-		GFF2049	0.51	-1.1
2,087,218	+		GFF2049	0.51	+0.3
2,087,218	+		GFF2049	0.51	+0.8
2,087,218	+		GFF2049	0.51	-1.3
2,087,226	-		GFF2049	0.52	-1.6
2,087,265	+		GFF2049	0.57	+1.4
2,087,272	-		GFF2049	0.58	-1.0
2,087,287	+		GFF2049	0.60	-0.9
2,087,303	-		GFF2049	0.62	-1.2
2,087,324	-		GFF2049	0.65	+0.0
2,087,335	+		GFF2049	0.67	-1.2
2,087,335	+		GFF2049	0.67	-0.4
2,087,335	+		GFF2049	0.67	-1.1
2,087,335	+		GFF2049	0.67	+0.2
2,087,343	-		GFF2049	0.68	-0.4
2,087,343	-		GFF2049	0.68	-0.7
2,087,346	+		GFF2049	0.68	-0.6
2,087,346	+		GFF2049	0.68	-1.4
2,087,346	+		GFF2049	0.68	+1.3
2,087,354	-		GFF2049	0.69	+0.6
2,087,354	-		GFF2049	0.69	-0.4
2,087,356	+		GFF2049	0.69	-0.6
2,087,375	-		GFF2049	0.72	-0.6
2,087,382	+		GFF2049	0.73	-0.9
2,087,382	+		GFF2049	0.73	+1.6
2,087,385	-		GFF2049	0.73	-0.2
2,087,390	-		GFF2049	0.74	+0.3
2,087,390	-		GFF2049	0.74	-0.7
2,087,390	-		GFF2049	0.74	-0.9
2,087,390	-		GFF2049	0.74	-0.3
2,087,390	-		GFF2049	0.74	-1.2
2,087,390	-		GFF2049	0.74	-0.9
2,087,395	-		GFF2049	0.74	+0.9
2,087,446	+		GFF2049	0.81	-0.3
2,087,446	+		GFF2049	0.81	-1.4
2,087,446	+		GFF2049	0.81	-0.6
2,087,446	+		GFF2049	0.81	-0.7
2,087,446	+		GFF2049	0.81	+0.7
2,087,446	+		GFF2049	0.81	+0.5
2,087,446	+		GFF2049	0.81	-1.3
2,087,454	-		GFF2049	0.82	+0.3
2,087,454	-		GFF2049	0.82	-1.4
2,087,454	-		GFF2049	0.82	-0.7
2,087,454	-		GFF2049	0.82	+0.6
2,087,454	-		GFF2049	0.82	-1.7
2,087,454	-		GFF2049	0.82	-1.5
2,087,454	-		GFF2049	0.82	-0.9
2,087,454	-		GFF2049	0.82	-0.6
2,087,454	-		GFF2049	0.82	-1.4
2,087,454	-		GFF2049	0.82	+0.1
2,087,454	-		GFF2049	0.82	-2.4
2,087,454	-		GFF2049	0.82	-0.8
2,087,454	-		GFF2049	0.82	-0.3
2,087,460	+		GFF2049	0.83	-0.4
2,087,460	+		GFF2049	0.83	-1.6
2,087,464	-		GFF2049	0.83	-1.1
2,087,468	-		GFF2049	0.84	-1.4
2,087,468	-		GFF2049	0.84	-0.5
2,087,468	-		GFF2049	0.84	-1.6
2,087,520	+				-1.6
2,087,528	-				+1.1
2,087,529	+				+0.1
2,087,541	-				+0.3
2,087,541	-				-1.8
2,087,547	-				-0.3
2,087,563	+				+0.3
2,087,621	-				-0.1
2,087,637	+				-1.7
2,087,637	+				-0.9
2,087,642	+				-0.4
2,087,642	+				-0.6
2,087,645	-				-0.2
2,087,645	-				+0.5
2,087,650	-				-0.4
2,087,663	+				+0.1
2,087,679	-				+0.1
2,087,680	+				-1.4
2,087,684	+				-0.3
2,087,690	+				+0.8
2,087,700	+				-1.1
2,087,708	-				-0.5
2,087,708	-				-2.0
2,087,713	-				-0.2
2,087,714	+				+0.3
2,087,720	+				-1.5