Strain Fitness in Sphingobium sp. HT1-2 around GFF2034

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,063,419	-		GFF2033	0.47	+0.8
2,063,471	+		GFF2033	0.50	-1.7
2,063,473	-		GFF2033	0.50	+1.1
2,063,475	-		GFF2033	0.50	+0.6
2,063,537	-		GFF2033	0.54	-0.2
2,063,546	-		GFF2033	0.54	+1.2
2,063,575	-		GFF2033	0.56	+0.4
2,063,610	+		GFF2033	0.57	+0.7
2,063,610	+		GFF2033	0.57	-0.7
2,063,610	+		GFF2033	0.57	+0.1
2,063,610	+		GFF2033	0.57	-1.1
2,063,618	-		GFF2033	0.58	+0.5
2,063,618	-		GFF2033	0.58	-0.2
2,063,632	+		GFF2033	0.59	-0.1
2,063,637	+		GFF2033	0.59	+2.4
2,063,637	+		GFF2033	0.59	-2.4
2,063,637	+		GFF2033	0.59	-0.5
2,063,637	+		GFF2033	0.59	-0.5
2,063,637	+		GFF2033	0.59	-0.8
2,063,637	+		GFF2033	0.59	+1.3
2,063,637	+		GFF2033	0.59	-0.4
2,063,640	-		GFF2033	0.59	-1.8
2,063,640	-		GFF2033	0.59	+0.5
2,063,645	-		GFF2033	0.59	-0.3
2,063,645	-		GFF2033	0.59	-0.3
2,063,645	-		GFF2033	0.59	-0.9
2,063,645	-		GFF2033	0.59	-0.7
2,063,645	-		GFF2033	0.59	+1.6
2,063,645	-		GFF2033	0.59	-0.0
2,063,665	+		GFF2033	0.60	+0.8
2,063,673	-		GFF2033	0.61	-0.8
2,063,677	+		GFF2033	0.61	-0.3
2,063,677	+		GFF2033	0.61	-0.8
2,063,685	-		GFF2033	0.61	+0.1
2,063,690	-		GFF2033	0.62	-1.2
2,063,704	+		GFF2033	0.62	-0.5
2,063,704	+		GFF2033	0.62	-0.5
2,063,712	-		GFF2033	0.63	-0.2
2,063,734	+		GFF2033	0.64	-1.8
2,063,743	+		GFF2033	0.64	-0.9
2,063,791	+		GFF2033	0.67	-1.4
2,063,791	+		GFF2033	0.67	+0.2
2,063,794	-		GFF2033	0.67	-0.2
2,063,799	-		GFF2033	0.67	+0.0
2,063,799	-		GFF2033	0.67	-0.5
2,063,803	+		GFF2033	0.68	+1.7
2,063,816	-		GFF2033	0.68	-0.7
2,063,867	-		GFF2033	0.71	+0.2
2,063,927	+		GFF2033	0.74	-2.1
2,063,932	+		GFF2033	0.74	+0.2
2,063,935	-		GFF2033	0.74	-1.7
2,063,957	-		GFF2033	0.76	-1.0
2,063,959	-		GFF2033	0.76	-0.8
2,063,964	+		GFF2033	0.76	+0.8
2,064,006	+		GFF2033	0.78	+0.5
2,064,008	-		GFF2033	0.78	-0.8
2,064,039	+		GFF2033	0.80	-0.6
2,064,051	+		GFF2033	0.81	-0.8
2,064,059	+		GFF2033	0.81	+0.3
2,064,067	-		GFF2033	0.81	+0.1
2,064,067	-		GFF2033	0.81	+0.1
2,064,067	-		GFF2033	0.81	+1.5
2,064,082	+		GFF2033	0.82	+0.0
2,064,082	+		GFF2033	0.82	-0.2
2,064,087	+		GFF2033	0.82	-0.3
2,064,087	+		GFF2033	0.82	-0.9
2,064,090	-		GFF2033	0.83	+0.8
2,064,090	-		GFF2033	0.83	+0.4
2,064,095	-		GFF2033	0.83	-1.3
2,064,095	-		GFF2033	0.83	+0.3
2,064,106	+		GFF2033	0.83	-0.7
2,064,111	+		GFF2033	0.84	-0.5
2,064,111	+		GFF2033	0.84	-1.1
2,064,114	-		GFF2033	0.84	-1.1
2,064,119	-		GFF2033	0.84	-0.5
2,064,119	-		GFF2033	0.84	-0.1
2,064,119	-		GFF2033	0.84	-0.3
2,064,138	-		GFF2033	0.85	+0.0
2,064,155	+		GFF2033	0.86	-1.2
2,064,155	-		GFF2033	0.86	+0.9
2,064,192	-		GFF2033	0.88	+1.4
2,064,225	+		GFF2033	0.90	-1.9
2,064,225	+		GFF2033	0.90	+0.6
2,064,225	+		GFF2033	0.90	-0.7
2,064,225	+		GFF2033	0.90	+1.2
2,064,225	+		GFF2033	0.90	-1.3
2,064,227	+		GFF2033	0.90	-1.2
2,064,233	-				-1.1
2,064,233	-				-1.7
2,064,233	-				-0.5
2,064,233	-				-1.6
2,064,233	-				+0.8
2,064,233	-				-0.9
2,064,233	-				-0.7
2,064,233	-				-0.5
2,064,233	-				-0.5
2,064,233	-				+0.3
2,064,233	-				+0.1
2,064,233	-				-0.8
2,064,233	-				-0.4
2,064,233	-				-0.2
2,064,250	-				-0.3
2,064,257	+				-0.7
2,064,276	+				+0.3
2,064,283	-				+0.5
2,064,304	+				-0.7
2,064,330	+				+1.0
2,064,334	+				+0.4
2,064,335	+				-1.1
2,064,335	+				-0.6
2,064,335	+				-1.7
2,064,335	+				-0.7
2,064,340	+				-1.9
2,064,343	-				-0.8
2,064,343	-				-0.7
2,064,343	-				+0.2
2,064,343	-				-0.3
2,064,343	-				+0.7
2,064,343	-				-0.3
2,064,343	-				-0.2
2,064,343	-				+0.3
2,064,353	-				-2.1
2,064,398	+				+1.8
2,064,399	+				+0.7
2,064,399	+				-1.1
2,064,403	+				+1.6
2,064,411	-				-1.6
2,064,442	-				+0.8
2,064,442	-				-0.8
2,064,444	+				-1.1
2,064,495	+				-0.3
2,064,500	+				+0.4
2,064,543	+				-0.9
2,064,545	+				+0.2
2,064,568	-		GFF2034	0.10	-0.8
2,064,570	+		GFF2034	0.11	-0.2
2,064,570	+		GFF2034	0.11	+0.7
2,064,578	-		GFF2034	0.11	-1.5
2,064,583	-		GFF2034	0.11	-0.2
2,064,602	+		GFF2034	0.13	-1.0
2,064,627	-		GFF2034	0.15	+0.8
2,064,655	+		GFF2034	0.16	+0.5
2,064,655	+		GFF2034	0.16	+0.7
2,064,658	-		GFF2034	0.17	-0.4
2,064,697	+		GFF2034	0.19	-0.3
2,064,702	+		GFF2034	0.20	-0.1
2,064,702	+		GFF2034	0.20	-1.4
2,064,709	+		GFF2034	0.20	+0.4
2,064,709	+		GFF2034	0.20	-1.6
2,064,717	-		GFF2034	0.21	-0.9
2,064,725	+		GFF2034	0.21	-0.5
2,064,733	+		GFF2034	0.22	-0.8
2,064,734	+		GFF2034	0.22	-1.1
2,064,758	-		GFF2034	0.24	-0.3
2,064,758	-		GFF2034	0.24	-1.1
2,064,789	-		GFF2034	0.26	-1.1
2,064,856	+		GFF2034	0.30	-1.9
2,064,885	-		GFF2034	0.32	-0.2
2,064,888	-		GFF2034	0.33	-0.6
2,064,915	-		GFF2034	0.34	+0.4
2,064,915	-		GFF2034	0.34	-0.8
2,064,915	-		GFF2034	0.34	-0.7
2,064,928	+		GFF2034	0.35	+1.3
2,064,941	+		GFF2034	0.36	+1.4
2,064,942	+		GFF2034	0.36	-1.5
2,064,944	-		GFF2034	0.36	-1.3
2,064,968	-		GFF2034	0.38	-1.8
2,064,968	-		GFF2034	0.38	-0.2
2,065,016	-		GFF2034	0.41	-1.0
2,065,066	+		GFF2034	0.45	-0.2
2,065,066	+		GFF2034	0.45	+0.7
2,065,066	+		GFF2034	0.45	-0.1
2,065,066	+		GFF2034	0.45	+0.4
2,065,066	+		GFF2034	0.45	-1.1
2,065,066	+		GFF2034	0.45	-1.5
2,065,066	+		GFF2034	0.45	-1.0
2,065,074	-		GFF2034	0.45	-0.9
2,065,074	-		GFF2034	0.45	-0.5
2,065,074	-		GFF2034	0.45	-1.4
2,065,074	-		GFF2034	0.45	-1.1
2,065,074	-		GFF2034	0.45	+0.8
2,065,074	-		GFF2034	0.45	-0.0
2,065,074	-		GFF2034	0.45	+0.2
2,065,093	-		GFF2034	0.47	+0.7
2,065,140	-		GFF2034	0.50	+0.2
2,065,142	-		GFF2034	0.50	+1.0
2,065,143	-		GFF2034	0.50	+0.2
2,065,150	-		GFF2034	0.51	-0.8
2,065,170	+		GFF2034	0.52	-0.6
2,065,177	-		GFF2034	0.53	-1.0
2,065,178	-		GFF2034	0.53	-0.3
2,065,178	-		GFF2034	0.53	+0.2
2,065,178	-		GFF2034	0.53	-1.1
2,065,178	-		GFF2034	0.53	-0.8
2,065,178	-		GFF2034	0.53	-0.6
2,065,190	-		GFF2034	0.53	-1.5
2,065,210	+		GFF2034	0.55	-0.3
2,065,214	+		GFF2034	0.55	-0.6
2,065,218	-		GFF2034	0.55	-1.8
2,065,218	-		GFF2034	0.55	+0.5
2,065,219	+		GFF2034	0.55	-0.5
2,065,223	-		GFF2034	0.56	-0.5
2,065,248	+		GFF2034	0.57	-1.1
2,065,296	+		GFF2034	0.61	-0.9
2,065,345	+		GFF2034	0.64	-1.5
2,065,345	+		GFF2034	0.64	-0.3
2,065,348	-		GFF2034	0.64	-1.1
2,065,365	+		GFF2034	0.66	-2.0
2,065,370	+		GFF2034	0.66	-1.6
2,065,370	+		GFF2034	0.66	-0.8
2,065,370	+		GFF2034	0.66	-1.4
2,065,373	-		GFF2034	0.66	-1.1
2,065,378	-		GFF2034	0.66	-0.8
2,065,381	+		GFF2034	0.67	-1.8
2,065,381	+		GFF2034	0.67	+0.7
2,065,402	-		GFF2034	0.68	-2.3
2,065,402	-		GFF2034	0.68	+0.4
2,065,404	+		GFF2034	0.68	-2.4
2,065,406	-		GFF2034	0.68	-0.3
2,065,412	-		GFF2034	0.69	-0.9
2,065,463	-		GFF2034	0.72	-1.3
2,065,482	-		GFF2034	0.74	-0.7
2,065,503	+		GFF2034	0.75	-0.2
2,065,515	-		GFF2034	0.76	-0.3
2,065,562	-		GFF2034	0.79	-1.1
2,065,573	+		GFF2034	0.80	+0.2
2,065,573	+		GFF2034	0.80	-0.6
2,065,573	+		GFF2034	0.80	-0.3
2,065,573	+		GFF2034	0.80	-1.1
2,065,579	+		GFF2034	0.80	-0.7
2,065,581	-		GFF2034	0.80	-0.8
2,065,587	-		GFF2034	0.81	+0.3
2,065,587	-		GFF2034	0.81	-0.8
2,065,611	+		GFF2034	0.83	-0.5
2,065,674	-		GFF2034	0.87	+0.0
2,065,676	+		GFF2034	0.87	+0.4
2,065,676	+		GFF2034	0.87	-0.8
2,065,682	-		GFF2034	0.87	+0.3
2,065,692	-		GFF2034	0.88	-1.7
2,065,696	+		GFF2034	0.88	-0.0
2,065,702	+		GFF2034	0.89	-0.4
2,065,702	+		GFF2034	0.89	-0.9
2,065,704	-		GFF2034	0.89	-0.0
2,065,704	-		GFF2034	0.89	-0.7
2,065,704	-		GFF2034	0.89	-0.1
2,065,704	-		GFF2034	0.89	-0.2
2,065,704	-		GFF2034	0.89	-1.1
2,065,710	-		GFF2034	0.89	-1.6
2,065,710	-		GFF2034	0.89	-0.7
2,065,710	-		GFF2034	0.89	-1.5
2,065,710	-		GFF2034	0.89	-0.2
2,065,710	-		GFF2034	0.89	+0.1
2,065,710	-		GFF2034	0.89	+1.4
2,065,715	-		GFF2034	0.90	-1.3
2,065,720	-				-1.1
2,065,739	+				-0.7
2,065,752	+				-0.9
2,065,760	-				-1.1
2,065,768	-				-0.3
2,065,777	+				-2.0
2,065,806	-				+1.7
2,065,811	+				-1.3
2,065,816	+				-1.6
2,065,816	+				-0.0
2,065,816	+				-0.8
2,065,816	+				-0.5
2,065,816	+				-0.7
2,065,824	-				-0.3
2,065,824	-				-0.3
2,065,824	-				-1.2
2,065,824	-				-1.1
2,065,824	-				+0.4
2,065,824	-				-1.0
2,065,824	-				-0.8
2,065,824	-				-1.5
2,065,824	-				-0.2
2,065,824	-				-1.8
2,065,824	-				-2.2
2,065,896	+				-0.8
2,065,904	-				-1.4
2,065,919	-				-0.6
2,065,958	+				-0.1
2,065,972	-				+0.2
2,065,981	+				-1.8
2,065,984	-				+0.1
2,066,016	+		GFF2035	0.11	-0.8
2,066,024	-		GFF2035	0.12	-1.5
2,066,024	-		GFF2035	0.12	+0.5
2,066,024	-		GFF2035	0.12	-1.1
2,066,026	+		GFF2035	0.12	-1.5
2,066,034	-		GFF2035	0.12	+0.8
2,066,049	-		GFF2035	0.14	-0.7
2,066,059	+		GFF2035	0.14	-0.8
2,066,077	-		GFF2035	0.16	+1.1
2,066,093	+		GFF2035	0.17	-0.7
2,066,094	+		GFF2035	0.17	-2.3
2,066,140	+		GFF2035	0.21	-0.7
2,066,145	+		GFF2035	0.21	-0.5
2,066,211	-		GFF2035	0.27	+0.2
2,066,216	-		GFF2035	0.27	+0.8
2,066,227	+		GFF2035	0.28	+0.8
2,066,227	+		GFF2035	0.28	-1.7
2,066,227	+		GFF2035	0.28	-1.5
2,066,227	+		GFF2035	0.28	-0.8
2,066,227	+		GFF2035	0.28	-0.3
2,066,235	-		GFF2035	0.28	-1.1
2,066,235	-		GFF2035	0.28	-1.3
2,066,235	-		GFF2035	0.28	-0.6
2,066,235	-		GFF2035	0.28	-0.2
2,066,237	+		GFF2035	0.29	-1.5
2,066,245	-		GFF2035	0.29	+0.4
2,066,245	-		GFF2035	0.29	+0.7
2,066,245	-		GFF2035	0.29	+0.7
2,066,245	-		GFF2035	0.29	+0.0
2,066,246	-		GFF2035	0.29	+0.7
2,066,258	+		GFF2035	0.30	-0.8
2,066,266	+		GFF2035	0.31	-0.2
2,066,266	+		GFF2035	0.31	-1.8
2,066,266	+		GFF2035	0.31	+1.2
2,066,268	-		GFF2035	0.31	-0.8
2,066,271	+		GFF2035	0.31	-1.0
2,066,271	+		GFF2035	0.31	-1.2
2,066,274	-		GFF2035	0.32	-0.9
2,066,274	-		GFF2035	0.32	-1.1
2,066,274	-		GFF2035	0.32	-0.5
2,066,274	-		GFF2035	0.32	+0.4
2,066,284	-		GFF2035	0.32	-0.5
2,066,284	-		GFF2035	0.32	-0.3
2,066,293	+		GFF2035	0.33	-0.3
2,066,293	+		GFF2035	0.33	+1.0
2,066,306	-		GFF2035	0.34	-0.3
2,066,306	-		GFF2035	0.34	-1.0
2,066,306	-		GFF2035	0.34	+0.8
2,066,324	-		GFF2035	0.35	-0.6
2,066,326	+		GFF2035	0.36	+0.9
2,066,456	+		GFF2035	0.46	-0.6
2,066,456	+		GFF2035	0.46	-0.7
2,066,517	-		GFF2035	0.51	-0.2
2,066,538	+		GFF2035	0.52	-1.5
2,066,546	-		GFF2035	0.53	-0.8
2,066,548	+		GFF2035	0.53	+0.5
2,066,556	-		GFF2035	0.54	+2.1
2,066,556	-		GFF2035	0.54	-0.6
2,066,556	-		GFF2035	0.54	-1.7
2,066,556	-		GFF2035	0.54	-0.7
2,066,568	+		GFF2035	0.55	-0.9
2,066,568	+		GFF2035	0.55	-0.8
2,066,570	-		GFF2035	0.55	-1.3
2,066,576	-		GFF2035	0.55	-0.6
2,066,594	+		GFF2035	0.57	-0.8
2,066,599	+		GFF2035	0.57	+0.3
2,066,626	-		GFF2035	0.59	-1.7
2,066,626	-		GFF2035	0.59	-1.0
2,066,631	-		GFF2035	0.60	-1.4
2,066,645	-		GFF2035	0.61	-1.0
2,066,645	-		GFF2035	0.61	+0.2
2,066,645	-		GFF2035	0.61	+0.3
2,066,653	+		GFF2035	0.62	-0.9
2,066,653	+		GFF2035	0.62	-1.0
2,066,653	+		GFF2035	0.62	-0.7
2,066,653	+		GFF2035	0.62	-1.3
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