Strain Fitness in Sphingobium sp. HT1-2 around GFF2018

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,042,318	-		GFF2017	0.30	+1.2
2,042,342	+		GFF2017	0.33	+0.3
2,042,344	-		GFF2017	0.34	-0.2
2,042,348	-		GFF2017	0.34	+0.7
2,042,369	+		GFF2017	0.37	-0.3
2,042,369	+		GFF2017	0.37	+0.5
2,042,454	-		GFF2017	0.47	-1.1
2,042,467	-		GFF2017	0.49	+1.4
2,042,486	+		GFF2017	0.51	+0.5
2,042,508	+		GFF2017	0.54	+1.2
2,042,511	-		GFF2017	0.55	-0.3
2,042,511	-		GFF2017	0.55	-1.0
2,042,539	+		GFF2017	0.58	-1.3
2,042,540	-		GFF2017	0.58	-0.7
2,042,563	-		GFF2017	0.61	+1.0
2,042,599	+		GFF2017	0.66	-0.3
2,042,599	+		GFF2017	0.66	+0.3
2,042,609	+		GFF2017	0.67	-1.5
2,042,609	+		GFF2017	0.67	+0.9
2,042,712	-		GFF2017	0.80	-0.4
2,042,745	+		GFF2017	0.84	+2.0
2,042,745	+		GFF2017	0.84	-1.4
2,042,745	+		GFF2017	0.84	-0.4
2,042,745	+		GFF2017	0.84	-1.3
2,042,753	-		GFF2017	0.85	-0.5
2,042,753	-		GFF2017	0.85	+0.7
2,042,753	-		GFF2017	0.85	-0.2
2,042,753	-		GFF2017	0.85	-1.2
2,042,753	-		GFF2017	0.85	-0.2
2,042,753	-		GFF2017	0.85	-0.3
2,042,759	-		GFF2017	0.86	+1.0
2,042,764	+		GFF2017	0.86	+0.5
2,042,845	+				-0.3
2,042,868	-				-1.2
2,042,916	+				+1.7
2,042,924	-				-0.5
2,042,938	+				+2.0
2,042,943	-				+1.9
2,042,946	-				+0.8
2,042,961	+				-0.3
2,042,961	+				+0.4
2,042,961	+				+1.2
2,042,961	+				+0.5
2,042,961	+				-0.1
2,042,969	-				+1.4
2,042,969	-				+2.2
2,042,970	-				+1.4
2,042,989	-				+0.1
2,042,997	+				+1.3
2,043,000	-				+0.5
2,043,002	+				-0.3
2,043,002	+				+1.5
2,043,002	+				+0.0
2,043,002	+				+1.1
2,043,002	+				-1.8
2,043,002	+				-0.9
2,043,005	-				-0.8
2,043,005	-				+1.6
2,043,010	-				+0.2
2,043,010	-				-0.3
2,043,010	-				+1.4
2,043,010	-				-0.5
2,043,010	-				+0.6
2,043,010	-				-0.3
2,043,010	-				+0.0
2,043,016	-				+0.9
2,043,029	-				+0.5
2,043,039	-				+0.6
2,043,039	-				+0.3
2,043,039	-				-0.4
2,043,039	-				+0.2
2,043,040	-				+0.4
2,043,056	-				-0.8
2,043,088	+				+0.4
2,043,090	+				+0.8
2,043,090	-				+0.5
2,043,150	-				+0.8
2,043,292	+				-0.4
2,043,295	+				+0.9
2,043,304	+				-1.7
2,043,320	+				-0.0
2,043,353	-		GFF2018	0.10	+0.5
2,043,353	-		GFF2018	0.10	-1.3
2,043,373	+		GFF2018	0.13	-0.5
2,043,377	+		GFF2018	0.14	-0.1
2,043,377	+		GFF2018	0.14	-0.9
2,043,387	+		GFF2018	0.16	+0.8
2,043,450	+		GFF2018	0.26	+0.7
2,043,495	-		GFF2018	0.34	+0.1
2,043,496	-		GFF2018	0.34	-1.2
2,043,505	-		GFF2018	0.36	-1.4
2,043,549	+		GFF2018	0.43	-2.4
2,043,549	+		GFF2018	0.43	-1.0
2,043,549	+		GFF2018	0.43	-0.2
2,043,549	+		GFF2018	0.43	-1.3
2,043,549	+		GFF2018	0.43	+0.1
2,043,549	+		GFF2018	0.43	-0.1
2,043,553	+		GFF2018	0.44	-1.7
2,043,581	-		GFF2018	0.48	-0.2
2,043,598	-		GFF2018	0.51	-2.0
2,043,598	-		GFF2018	0.51	-1.9
2,043,598	-		GFF2018	0.51	-0.4
2,043,599	+		GFF2018	0.51	-1.5
2,043,602	-		GFF2018	0.52	+1.2
2,043,615	+		GFF2018	0.54	-0.9
2,043,658	-		GFF2018	0.61	+1.2
2,043,658	-		GFF2018	0.61	-0.6
2,043,660	+		GFF2018	0.61	+0.5
2,043,660	+		GFF2018	0.61	-0.7
2,043,673	-		GFF2018	0.64	-0.3
2,043,698	+		GFF2018	0.68	-0.2
2,043,763	+		GFF2018	0.79	-1.0
2,043,765	+		GFF2018	0.79	+0.3
2,043,771	-		GFF2018	0.80	-0.7
2,043,771	-		GFF2018	0.80	-2.2
2,043,771	-		GFF2018	0.80	-0.9
2,043,833	+				-0.5
2,043,833	+				-1.1
2,043,856	+				+0.6
2,043,856	+				-1.0
2,043,864	-				-2.1
2,043,874	-				-2.2
2,043,892	-				-0.1
2,043,892	-				+0.6
2,043,892	-				-2.3
2,043,892	-				-0.2
2,043,896	-				-1.1
2,043,898	-				-1.1
2,043,915	+				-1.0
2,043,915	+				-0.1
2,043,915	+				-1.2
2,043,920	+				-0.7
2,043,920	+				-0.3
2,043,920	+				-0.3
2,043,920	+				+0.4
2,043,920	+				+0.2
2,043,920	+				-0.6
2,043,920	+				-1.1
2,043,920	+				-0.4
2,043,923	-				+0.9
2,043,923	-				-1.0
2,043,923	-				+0.5
2,043,923	-				-0.1
2,043,923	-				-0.5
2,043,928	-				-1.1
2,043,928	-				-0.3
2,043,928	-				-2.0
2,043,928	-				-0.6
2,043,928	-				+0.2
2,043,951	+				-1.4
2,043,957	-				+0.7
2,043,962	-				-0.3
2,043,993	-		GFF2019	0.12	+1.3
2,044,024	+		GFF2019	0.16	-0.3
2,044,032	+		GFF2019	0.17	-0.4
2,044,044	+		GFF2019	0.19	+0.9
2,044,047	-		GFF2019	0.19	+0.7
2,044,072	-		GFF2019	0.23	-1.0
2,044,097	-		GFF2019	0.26	-1.2
2,044,121	-		GFF2019	0.29	+1.4
2,044,121	-		GFF2019	0.29	-0.6
2,044,131	-		GFF2019	0.30	-0.3
2,044,131	-		GFF2019	0.30	+0.3
2,044,192	+		GFF2019	0.38	-0.6
2,044,241	+		GFF2019	0.45	+1.2
2,044,242	+		GFF2019	0.45	-0.4
2,044,282	-		GFF2019	0.50	-0.8
2,044,282	-		GFF2019	0.50	+0.3
2,044,333	+		GFF2019	0.57	+0.2
2,044,333	+		GFF2019	0.57	-0.3
2,044,365	+		GFF2019	0.61	+0.1
2,044,365	+		GFF2019	0.61	-1.8
2,044,365	+		GFF2019	0.61	-0.4
2,044,365	+		GFF2019	0.61	-1.3
2,044,365	+		GFF2019	0.61	+0.8
2,044,365	+		GFF2019	0.61	-0.3
2,044,373	-		GFF2019	0.62	+0.3
2,044,373	-		GFF2019	0.62	-0.3
2,044,399	+		GFF2019	0.66	+1.2
2,044,409	-		GFF2019	0.67	-1.8
2,044,445	-		GFF2019	0.72	+0.3
2,044,455	-		GFF2019	0.73	-1.1
2,044,466	-		GFF2019	0.74	-1.4
2,044,476	-		GFF2019	0.76	-1.8
2,044,476	-		GFF2019	0.76	-0.7
2,044,476	-		GFF2019	0.76	-0.1
2,044,478	-		GFF2019	0.76	+0.3
2,044,481	-		GFF2019	0.76	-0.6
2,044,481	-		GFF2019	0.76	-1.2
2,044,481	-		GFF2019	0.76	+0.6
2,044,481	-		GFF2019	0.76	-0.8
2,044,481	-		GFF2019	0.76	+0.0
2,044,486	-		GFF2019	0.77	+0.5
2,044,533	+		GFF2019	0.83	-1.6
2,044,533	+		GFF2019	0.83	+0.3
2,044,533	+		GFF2019	0.83	-0.1
2,044,617	+				+0.2
2,044,627	+				+0.5
2,044,677	+				-0.6
2,044,696	-				-0.8
2,044,714	+				+0.4
2,044,714	+				-0.1
2,044,714	+				+0.9
2,044,722	-				-1.4
2,044,722	-				+0.9
2,044,722	-				+1.2
2,044,723	-				+0.1
2,044,726	+				-1.6
2,044,734	-		GFF2020	0.11	+0.7
2,044,760	+		GFF2020	0.14	-0.7
2,044,765	+		GFF2020	0.15	+0.1
2,044,765	+		GFF2020	0.15	-0.9
2,044,766	+		GFF2020	0.15	-1.3
2,044,774	-		GFF2020	0.16	+1.0
2,044,774	-		GFF2020	0.16	-1.1
2,044,774	-		GFF2020	0.16	-0.3
2,044,774	-		GFF2020	0.16	-0.7
2,044,774	-		GFF2020	0.16	-0.4
2,044,781	+		GFF2020	0.17	+0.8
2,044,789	-		GFF2020	0.18	-0.1
2,044,791	+		GFF2020	0.19	+0.4
2,044,816	+		GFF2020	0.22	-0.0
2,044,816	+		GFF2020	0.22	+0.6
2,044,816	+		GFF2020	0.22	-3.0
2,044,816	+		GFF2020	0.22	-1.2
2,044,819	-		GFF2020	0.22	-0.9
2,044,842	+		GFF2020	0.26	-0.3
2,044,842	+		GFF2020	0.26	+0.0
2,044,845	-		GFF2020	0.26	-0.5
2,044,847	+		GFF2020	0.26	-1.4
2,044,847	-		GFF2020	0.26	-0.7
2,044,847	-		GFF2020	0.26	-1.4
2,044,850	-		GFF2020	0.27	-0.6
2,044,850	-		GFF2020	0.27	-0.5
2,044,854	+		GFF2020	0.27	-0.8
2,044,854	+		GFF2020	0.27	+0.5
2,044,854	+		GFF2020	0.27	-0.4
2,044,854	+		GFF2020	0.27	-1.2
2,044,859	+		GFF2020	0.28	-1.0
2,044,862	-		GFF2020	0.28	-0.7
2,044,862	-		GFF2020	0.28	+1.7
2,044,869	+		GFF2020	0.29	+0.6
2,044,877	-		GFF2020	0.30	-0.3
2,044,885	+		GFF2020	0.32	+0.4
2,044,885	+		GFF2020	0.32	-1.1