Strain Fitness in Sphingobium sp. HT1-2 around GFF1994

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,014,098	+		GFF1993	0.15	-1.2
2,014,106	-		GFF1993	0.16	-0.3
2,014,116	+		GFF1993	0.17	-0.1
2,014,124	-		GFF1993	0.17	-1.3
2,014,131	-		GFF1993	0.18	+0.7
2,014,159	+		GFF1993	0.20	-0.6
2,014,167	+		GFF1993	0.21	+0.1
2,014,174	+		GFF1993	0.22	+0.7
2,014,174	+		GFF1993	0.22	+1.0
2,014,174	+		GFF1993	0.22	-0.3
2,014,174	+		GFF1993	0.22	-0.6
2,014,174	+		GFF1993	0.22	+0.8
2,014,182	-		GFF1993	0.22	-0.2
2,014,182	-		GFF1993	0.22	-0.3
2,014,182	-		GFF1993	0.22	-0.5
2,014,192	-		GFF1993	0.23	-1.1
2,014,220	-		GFF1993	0.26	-0.8
2,014,233	-		GFF1993	0.27	+0.6
2,014,240	+		GFF1993	0.28	-1.3
2,014,248	-		GFF1993	0.28	-1.4
2,014,248	-		GFF1993	0.28	-1.5
2,014,272	+		GFF1993	0.30	-1.0
2,014,272	+		GFF1993	0.30	+0.5
2,014,272	+		GFF1993	0.30	-2.1
2,014,277	+		GFF1993	0.31	-2.2
2,014,280	-		GFF1993	0.31	+0.7
2,014,280	-		GFF1993	0.31	+0.7
2,014,280	-		GFF1993	0.31	-0.7
2,014,296	+		GFF1993	0.33	-0.5
2,014,309	-		GFF1993	0.34	-1.5
2,014,318	-		GFF1993	0.34	-0.3
2,014,333	-		GFF1993	0.36	+0.2
2,014,333	-		GFF1993	0.36	-0.2
2,014,337	-		GFF1993	0.36	+0.6
2,014,373	-		GFF1993	0.39	-1.1
2,014,380	+		GFF1993	0.40	+0.1
2,014,414	+		GFF1993	0.43	-0.1
2,014,421	+		GFF1993	0.44	-1.3
2,014,424	-		GFF1993	0.44	-0.2
2,014,452	+		GFF1993	0.46	-1.3
2,014,453	-		GFF1993	0.46	-1.5
2,014,474	-		GFF1993	0.48	-2.5
2,014,482	-		GFF1993	0.49	-0.3
2,014,482	-		GFF1993	0.49	+1.4
2,014,487	+		GFF1993	0.50	-0.3
2,014,487	-		GFF1993	0.50	+0.4
2,014,497	-		GFF1993	0.50	+1.2
2,014,497	-		GFF1993	0.50	-0.5
2,014,514	+		GFF1993	0.52	-0.1
2,014,514	+		GFF1993	0.52	-0.2
2,014,522	-		GFF1993	0.53	+0.0
2,014,532	-		GFF1993	0.54	-0.3
2,014,556	-		GFF1993	0.56	-0.3
2,014,630	+		GFF1993	0.62	-1.8
2,014,630	+		GFF1993	0.62	-0.5
2,014,633	-		GFF1993	0.62	+0.0
2,014,633	-		GFF1993	0.62	-1.4
2,014,638	-		GFF1993	0.63	-1.4
2,014,638	-		GFF1993	0.63	+0.8
2,014,638	-		GFF1993	0.63	-1.8
2,014,646	+		GFF1993	0.64	-1.5
2,014,646	+		GFF1993	0.64	-0.2
2,014,768	+		GFF1993	0.74	+0.4
2,014,768	+		GFF1993	0.74	-1.1
2,014,768	+		GFF1993	0.74	-0.7
2,014,770	+		GFF1993	0.75	-1.2
2,014,776	-		GFF1993	0.75	-0.2
2,014,776	-		GFF1993	0.75	-0.3
2,014,776	-		GFF1993	0.75	-0.6
2,014,777	-		GFF1993	0.75	-0.2
2,014,786	+		GFF1993	0.76	+0.1
2,014,786	+		GFF1993	0.76	-0.3
2,014,786	+		GFF1993	0.76	+0.7
2,014,802	-		GFF1993	0.78	-1.0
2,014,814	+		GFF1993	0.79	+0.7
2,014,816	-		GFF1993	0.79	-0.8
2,014,816	-		GFF1993	0.79	-0.2
2,014,818	+		GFF1993	0.79	-1.6
2,014,818	+		GFF1993	0.79	-0.4
2,014,818	+		GFF1993	0.79	-1.3
2,014,823	+		GFF1993	0.79	+0.9
2,014,823	+		GFF1993	0.79	-0.5
2,014,823	+		GFF1993	0.79	-0.2
2,014,823	+		GFF1993	0.79	-0.1
2,014,823	+		GFF1993	0.79	-0.4
2,014,823	+		GFF1993	0.79	+1.3
2,014,823	+		GFF1993	0.79	-1.3
2,014,823	+		GFF1993	0.79	+1.7
2,014,826	-		GFF1993	0.80	-0.6
2,014,831	-		GFF1993	0.80	-0.6
2,014,831	-		GFF1993	0.80	-0.6
2,014,831	-		GFF1993	0.80	+1.3
2,014,831	-		GFF1993	0.80	-1.4
2,014,831	-		GFF1993	0.80	+1.4
2,014,831	-		GFF1993	0.80	-1.5
2,014,831	-		GFF1993	0.80	-0.5
2,014,836	-		GFF1993	0.81	+0.3
2,014,855	-		GFF1993	0.82	+0.5
2,014,886	+		GFF1993	0.85	+0.1
2,014,886	+		GFF1993	0.85	+0.0
2,014,894	-		GFF1993	0.86	-1.6
2,014,894	-		GFF1993	0.86	-0.2
2,014,942	-				-0.1
2,014,952	+				+1.4
2,014,958	+				+1.1
2,014,958	+				-0.9
2,014,958	+				+0.9
2,014,960	+				-0.5
2,014,960	+				-0.5
2,014,966	-				-1.1
2,014,968	-				-0.8
2,014,990	+				+0.2
2,014,998	-				-0.7
2,015,020	+				-1.6
2,015,068	+				+0.5
2,015,070	+				-1.3
2,015,072	+				-0.3
2,015,076	-				-1.4
2,015,076	-				-1.0
2,015,076	-				-0.7
2,015,080	-				-1.3
2,015,126	+		GFF1994	0.28	-0.9
2,015,126	+		GFF1994	0.28	+1.1
2,015,126	+		GFF1994	0.28	+0.9
2,015,135	+		GFF1994	0.35	-1.0
2,015,143	+		GFF1994	0.41	-0.5
2,015,143	-		GFF1994	0.41	+0.8
2,015,143	-		GFF1994	0.41	+0.5
2,015,151	-		GFF1994	0.48	-0.2
2,015,163	+		GFF1994	0.57	-1.1
2,015,163	+		GFF1994	0.57	-0.8
2,015,169	+		GFF1994	0.62	-1.4
2,015,169	+		GFF1994	0.62	+0.0
2,015,171	+		GFF1994	0.63	-0.8
2,015,177	-		GFF1994	0.68	-0.2
2,015,178	+		GFF1994	0.69	-0.7
2,015,178	+		GFF1994	0.69	-0.1
2,015,178	+		GFF1994	0.69	+0.0
2,015,178	+		GFF1994	0.69	-1.6
2,015,178	+		GFF1994	0.69	+1.3
2,015,178	+		GFF1994	0.69	-1.4
2,015,178	+		GFF1994	0.69	-1.5
2,015,178	+		GFF1994	0.69	+0.1
2,015,178	+		GFF1994	0.69	-0.3
2,015,183	+		GFF1994	0.73	-1.2
2,015,183	+		GFF1994	0.73	-1.5
2,015,186	-		GFF1994	0.75	-0.8
2,015,186	-		GFF1994	0.75	-1.2
2,015,186	-		GFF1994	0.75	-0.4
2,015,186	-		GFF1994	0.75	-0.3
2,015,191	-		GFF1994	0.79	-1.1
2,015,191	-		GFF1994	0.79	-1.3
2,015,199	-		GFF1994	0.86	-0.2
2,015,199	-		GFF1994	0.86	-0.9
2,015,212	+				+0.1
2,015,212	+				-0.5
2,015,219	-				-1.4
2,015,220	-				-0.4
2,015,229	+				+0.0
2,015,237	-				+0.3
2,015,250	+				-0.6
2,015,251	+				-0.4
2,015,251	+				+1.1
2,015,251	+				+0.8
2,015,251	+				-0.2
2,015,251	+				-0.9
2,015,251	+				+1.3
2,015,251	+				+0.3
2,015,251	+				+0.7
2,015,251	+				-0.3
2,015,251	+				-0.9
2,015,251	+				-1.1
2,015,251	+				+1.2
2,015,251	+				-1.1
2,015,251	+				-0.3
2,015,251	+				-0.6
2,015,251	+				+0.1
2,015,251	+				-0.1
2,015,251	+				+1.3
2,015,251	+				-0.6
2,015,251	+				+0.4
2,015,251	+				+1.2
2,015,251	+				-1.5
2,015,251	+				-0.7
2,015,253	+				-2.1
2,015,258	-				+0.9
2,015,259	-				+0.7
2,015,259	-				+0.8
2,015,259	-				+0.0
2,015,259	-				-1.4
2,015,259	-				-0.5
2,015,259	-				-0.5
2,015,259	-				+0.5
2,015,259	-				+0.5
2,015,259	-				-0.6
2,015,259	-				+1.4
2,015,259	-				-2.0
2,015,259	-				-1.2
2,015,259	-				-0.8
2,015,259	-				-1.7
2,015,259	-				+0.3
2,015,259	-				-1.0
2,015,259	-				-0.9
2,015,259	-				-0.1
2,015,259	-				+0.5
2,015,259	-				-0.4
2,015,308	+				-1.0
2,015,308	+				-1.7
2,015,308	+				+1.1
2,015,308	+				+0.5
2,015,308	+				-0.4
2,015,308	+				+0.4
2,015,308	+				+0.1
2,015,308	+				+0.0
2,015,316	-				-0.8
2,015,316	-				-0.6
2,015,316	-				-0.6
2,015,316	-				+0.8
2,015,316	-				-1.4
2,015,316	-				-0.2
2,015,318	+				-0.2
2,015,319	+				+0.5
2,015,342	+				+1.3
2,015,354	+				-1.7
2,015,373	-				+0.4
2,015,383	+				-1.2
2,015,383	+				-0.3
2,015,391	-				-1.1
2,015,391	-				-0.1
2,015,414	+				-0.3
2,015,432	-				+0.7
2,015,443	-				-0.7
2,015,458	+				-0.8
2,015,468	-				-0.5
2,015,478	-				+0.9
2,015,484	+				-0.6
2,015,503	+				-0.2
2,015,513	-				-0.3
2,015,516	-		GFF1995	0.10	-0.6
2,015,516	-		GFF1995	0.10	+0.2
2,015,529	+		GFF1995	0.11	-0.2
2,015,529	+		GFF1995	0.11	+0.3
2,015,530	-		GFF1995	0.11	+0.1
2,015,534	+		GFF1995	0.11	+0.1
2,015,534	+		GFF1995	0.11	+0.7
2,015,534	+		GFF1995	0.11	-2.1
2,015,534	+		GFF1995	0.11	+0.0
2,015,534	+		GFF1995	0.11	-0.3
2,015,534	+		GFF1995	0.11	-1.9
2,015,539	+		GFF1995	0.12	-0.5
2,015,539	+		GFF1995	0.12	-0.4
2,015,539	+		GFF1995	0.12	-2.5
2,015,539	+		GFF1995	0.12	-0.6
2,015,539	+		GFF1995	0.12	+0.8
2,015,539	+		GFF1995	0.12	+0.3
2,015,539	+		GFF1995	0.12	-0.8
2,015,542	-		GFF1995	0.12	-1.2
2,015,542	-		GFF1995	0.12	-1.3
2,015,542	-		GFF1995	0.12	+0.8
2,015,547	-		GFF1995	0.12	-1.2
2,015,547	-		GFF1995	0.12	-1.0
2,015,547	-		GFF1995	0.12	+0.1
2,015,547	-		GFF1995	0.12	+1.0
2,015,548	+		GFF1995	0.12	-0.6
2,015,548	+		GFF1995	0.12	+0.5
2,015,556	-		GFF1995	0.13	-1.1
2,015,569	+		GFF1995	0.14	-1.6
2,015,592	+		GFF1995	0.15	+1.6
2,015,594	+		GFF1995	0.16	-0.5
2,015,594	+		GFF1995	0.16	-1.0
2,015,594	+		GFF1995	0.16	+1.4
2,015,595	-		GFF1995	0.16	-2.1
2,015,602	-		GFF1995	0.16	+0.3
2,015,606	+		GFF1995	0.16	-0.4
2,015,606	+		GFF1995	0.16	+0.8
2,015,614	+		GFF1995	0.17	+1.1
2,015,614	-		GFF1995	0.17	-1.3
2,015,635	+		GFF1995	0.18	+0.1
2,015,635	+		GFF1995	0.18	+0.7
2,015,635	+		GFF1995	0.18	-0.6
2,015,635	+		GFF1995	0.18	-0.8
2,015,635	+		GFF1995	0.18	+0.8
2,015,643	-		GFF1995	0.19	-1.1
2,015,643	-		GFF1995	0.19	-0.7
2,015,643	-		GFF1995	0.19	-1.9
2,015,643	-		GFF1995	0.19	-0.8
2,015,643	-		GFF1995	0.19	-0.5
2,015,643	-		GFF1995	0.19	-0.4
2,015,661	-		GFF1995	0.20	+1.2
2,015,702	-		GFF1995	0.23	+0.4
2,015,702	-		GFF1995	0.23	-1.2
2,015,708	+		GFF1995	0.23	-0.5
2,015,708	+		GFF1995	0.23	+0.0
2,015,708	+		GFF1995	0.23	+1.0
2,015,708	+		GFF1995	0.23	-1.3
2,015,716	-		GFF1995	0.24	-0.7
2,015,716	-		GFF1995	0.24	-0.9
2,015,726	-		GFF1995	0.25	-0.6
2,015,730	+		GFF1995	0.25	-1.1
2,015,743	+		GFF1995	0.26	-1.2
2,015,745	+		GFF1995	0.26	-0.4
2,015,795	-		GFF1995	0.30	-0.2
2,015,795	-		GFF1995	0.30	-0.5
2,015,797	+		GFF1995	0.30	+0.5
2,015,797	+		GFF1995	0.30	-1.3
2,015,805	+		GFF1995	0.30	-0.3
2,015,835	+		GFF1995	0.32	+1.5
2,015,835	+		GFF1995	0.32	-0.2
2,015,835	+		GFF1995	0.32	-2.1
2,015,835	+		GFF1995	0.32	+0.7
2,015,835	+		GFF1995	0.32	-1.0
2,015,835	+		GFF1995	0.32	+0.7
2,015,835	-		GFF1995	0.32	-0.1
2,015,838	-		GFF1995	0.32	+0.7
2,015,838	-		GFF1995	0.32	-0.5
2,015,840	+		GFF1995	0.33	-0.3
2,015,843	-		GFF1995	0.33	-0.3
2,015,843	-		GFF1995	0.33	-0.4
2,015,845	+		GFF1995	0.33	-0.6
2,015,845	+		GFF1995	0.33	-0.9
2,015,845	+		GFF1995	0.33	+0.0
2,015,845	+		GFF1995	0.33	-0.7
2,015,845	+		GFF1995	0.33	-1.5
2,015,845	+		GFF1995	0.33	-1.2
2,015,853	-		GFF1995	0.34	-0.7
2,015,853	-		GFF1995	0.34	+1.0
2,015,853	-		GFF1995	0.34	+0.8
2,015,867	-		GFF1995	0.35	-2.0
2,015,882	+		GFF1995	0.36	+1.3
2,015,899	+		GFF1995	0.37	-0.2
2,015,914	+		GFF1995	0.38	-0.1
2,016,014	+		GFF1995	0.45	-0.3
2,016,014	+		GFF1995	0.45	-1.3
2,016,051	-		GFF1995	0.47	-1.9
2,016,078	+		GFF1995	0.49	-0.7
2,016,096	-		GFF1995	0.50	-0.1
2,016,144	+		GFF1995	0.54	-0.7
2,016,144	+		GFF1995	0.54	+0.0
2,016,144	+		GFF1995	0.54	-0.0
2,016,144	+		GFF1995	0.54	-1.2
2,016,144	+		GFF1995	0.54	-0.1
2,016,144	+		GFF1995	0.54	-1.6
2,016,144	+		GFF1995	0.54	-1.1
2,016,144	+		GFF1995	0.54	+0.5
2,016,144	+		GFF1995	0.54	-1.1
2,016,144	+		GFF1995	0.54	-1.2
2,016,152	-		GFF1995	0.54	-0.3
2,016,152	-		GFF1995	0.54	+0.4
2,016,152	-		GFF1995	0.54	-0.4
2,016,152	-		GFF1995	0.54	-1.1
2,016,152	-		GFF1995	0.54	+0.4
2,016,152	-		GFF1995	0.54	-0.4
2,016,152	-		GFF1995	0.54	-0.4
2,016,152	-		GFF1995	0.54	+0.0
2,016,152	-		GFF1995	0.54	-1.1
2,016,152	-		GFF1995	0.54	-2.0
2,016,152	-		GFF1995	0.54	+0.4
2,016,152	-		GFF1995	0.54	-1.3
2,016,152	-		GFF1995	0.54	-2.1
2,016,152	-		GFF1995	0.54	+0.7
2,016,152	-		GFF1995	0.54	+0.9
2,016,152	-		GFF1995	0.54	-1.4
2,016,152	-		GFF1995	0.54	-1.1
2,016,152	-		GFF1995	0.54	-1.4
2,016,152	-		GFF1995	0.54	-0.1
2,016,178	+		GFF1995	0.56	-0.5
2,016,178	+		GFF1995	0.56	-0.3
2,016,178	+		GFF1995	0.56	-0.2
2,016,183	+		GFF1995	0.57	-0.4
2,016,205	+		GFF1995	0.58	+0.7
2,016,208	-		GFF1995	0.58	-0.9