Strain Fitness in Sphingobium sp. HT1-2 around GFF1960

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,986,191	+		GFF1959	0.86	-0.9
1,986,329	-				-0.4
1,986,365	+				-0.3
1,986,373	-				-1.1
1,986,375	-				-1.6
1,986,392	+				-0.6
1,986,403	+				-1.0
1,986,424	+				-1.3
1,986,424	-				+1.7
1,986,439	-				-1.0
1,986,439	-				-1.1
1,986,449	-				-1.1
1,986,481	+				+0.7
1,986,481	+				-0.8
1,986,481	+				-0.0
1,986,481	+				+0.1
1,986,481	+				-1.0
1,986,481	+				+0.6
1,986,481	+				-0.2
1,986,481	+				-2.2
1,986,481	+				-2.0
1,986,481	+				-0.9
1,986,481	+				-0.4
1,986,481	+				-2.2
1,986,481	+				+0.3
1,986,481	+				-0.3
1,986,481	+				+0.1
1,986,481	+				+0.1
1,986,481	+				-1.3
1,986,481	+				+0.6
1,986,481	+				-0.7
1,986,481	+				-0.8
1,986,481	+				+0.8
1,986,481	+				-0.4
1,986,481	+				-0.6
1,986,481	+				+0.6
1,986,481	+				-1.1
1,986,481	+				+0.0
1,986,481	+				-0.4
1,986,481	+				-0.4
1,986,481	+				-1.1
1,986,481	+				+0.7
1,986,481	+				+0.7
1,986,481	+				-1.3
1,986,481	+				-1.3
1,986,481	+				-1.6
1,986,481	+				-0.3
1,986,481	+				-2.3
1,986,481	+				-0.4
1,986,489	-				-0.4
1,986,489	-				+0.6
1,986,489	-				+0.1
1,986,489	-				-1.3
1,986,489	-				+0.1
1,986,489	-				-1.2
1,986,489	-				-2.0
1,986,489	-				-0.3
1,986,489	-				-1.2
1,986,489	-				-0.1
1,986,489	-				-1.0
1,986,489	-				+0.8
1,986,489	-				-0.9
1,986,489	-				-0.4
1,986,489	-				+0.7
1,986,489	-				+1.9
1,986,489	-				+0.1
1,986,489	-				-0.2
1,986,489	-				-0.6
1,986,489	-				-0.4
1,986,489	-				-0.2
1,986,489	-				-1.3
1,986,489	-				-0.4
1,986,489	-				+0.3
1,986,489	-				-2.2
1,986,489	-				-0.1
1,986,506	-				-0.4
1,986,506	-				-0.2
1,986,508	+				+0.7
1,986,522	+				-0.7
1,986,574	+				+1.5
1,986,574	+				+0.3
1,986,578	-				-1.1
1,986,585	+		GFF1960	0.10	-2.0
1,986,593	+		GFF1960	0.11	-0.7
1,986,601	-		GFF1960	0.12	-1.1
1,986,601	-		GFF1960	0.12	-1.7
1,986,621	-		GFF1960	0.14	+0.4
1,986,626	+		GFF1960	0.14	+0.3
1,986,626	-		GFF1960	0.14	-0.7
1,986,631	-		GFF1960	0.15	-0.4
1,986,640	+		GFF1960	0.16	-2.2
1,986,657	+		GFF1960	0.17	-1.6
1,986,665	-		GFF1960	0.18	-0.1
1,986,665	-		GFF1960	0.18	-1.6
1,986,666	-		GFF1960	0.18	+0.8
1,986,671	+		GFF1960	0.19	-2.1
1,986,671	+		GFF1960	0.19	+0.6
1,986,701	+		GFF1960	0.22	-1.7
1,986,706	+		GFF1960	0.22	-1.7
1,986,706	+		GFF1960	0.22	-1.1
1,986,709	-		GFF1960	0.22	-0.3
1,986,766	+		GFF1960	0.28	+0.2
1,986,767	-		GFF1960	0.28	+2.1
1,986,768	+		GFF1960	0.28	-1.7
1,986,776	-		GFF1960	0.29	-0.8
1,986,784	+		GFF1960	0.30	-1.4
1,986,784	+		GFF1960	0.30	-1.1
1,986,784	+		GFF1960	0.30	-0.3
1,986,784	+		GFF1960	0.30	+0.2
1,986,792	-		GFF1960	0.31	-0.6
1,986,792	-		GFF1960	0.31	-0.8
1,986,792	-		GFF1960	0.31	+0.4
1,986,816	+		GFF1960	0.33	-1.6
1,986,816	+		GFF1960	0.33	+0.7
1,986,816	+		GFF1960	0.33	+0.4
1,986,816	+		GFF1960	0.33	-1.6
1,986,816	+		GFF1960	0.33	-1.8
1,986,820	+		GFF1960	0.33	+0.3
1,986,828	-		GFF1960	0.34	-0.9
1,986,828	-		GFF1960	0.34	-1.3
1,986,834	+		GFF1960	0.35	-0.7
1,986,842	-		GFF1960	0.35	+0.3
1,986,850	-		GFF1960	0.36	-1.1
1,986,850	-		GFF1960	0.36	-1.2
1,986,864	-		GFF1960	0.38	+0.6
1,986,878	-		GFF1960	0.39	-2.2
1,986,888	+		GFF1960	0.40	-1.7
1,986,896	-		GFF1960	0.41	-0.6
1,986,897	-		GFF1960	0.41	+0.5
1,986,899	+		GFF1960	0.41	-0.7
1,986,899	+		GFF1960	0.41	-0.3
1,986,907	-		GFF1960	0.42	-0.9
1,986,909	+		GFF1960	0.42	-0.2
1,986,917	-		GFF1960	0.43	+0.4
1,986,919	+		GFF1960	0.43	+0.8
1,986,920	-		GFF1960	0.43	-0.5
1,986,922	-		GFF1960	0.43	-1.1
1,986,923	+		GFF1960	0.43	+1.7
1,986,923	+		GFF1960	0.43	-0.9
1,986,923	+		GFF1960	0.43	-0.3
1,986,923	+		GFF1960	0.43	-0.3
1,986,923	+		GFF1960	0.43	-0.6
1,986,923	+		GFF1960	0.43	+0.9
1,986,923	+		GFF1960	0.43	-0.2
1,986,923	+		GFF1960	0.43	+0.4
1,986,925	+		GFF1960	0.44	-0.1
1,986,931	-		GFF1960	0.44	-0.0
1,986,931	-		GFF1960	0.44	-0.3
1,986,931	-		GFF1960	0.44	-2.0
1,986,931	-		GFF1960	0.44	-0.8
1,986,931	-		GFF1960	0.44	-0.7
1,986,931	-		GFF1960	0.44	+0.6
1,986,931	-		GFF1960	0.44	-2.6
1,986,931	-		GFF1960	0.44	-1.3
1,986,931	-		GFF1960	0.44	+0.2
1,986,931	-		GFF1960	0.44	-1.7
1,986,954	-		GFF1960	0.46	+0.8
1,986,984	+		GFF1960	0.49	-1.5
1,986,988	+		GFF1960	0.50	+0.4
1,987,000	-		GFF1960	0.51	-1.3
1,987,006	-		GFF1960	0.52	-1.3
1,987,016	+		GFF1960	0.52	+0.3
1,987,024	-		GFF1960	0.53	+0.1
1,987,039	-		GFF1960	0.55	+0.7
1,987,048	+		GFF1960	0.56	+0.6
1,987,048	+		GFF1960	0.56	-0.2
1,987,056	-		GFF1960	0.56	-0.2
1,987,056	-		GFF1960	0.56	+0.6
1,987,056	-		GFF1960	0.56	-0.2
1,987,061	+		GFF1960	0.57	-0.7
1,987,069	-		GFF1960	0.58	+0.8
1,987,078	+		GFF1960	0.59	-0.7
1,987,080	+		GFF1960	0.59	-0.9
1,987,080	+		GFF1960	0.59	-1.7
1,987,108	+		GFF1960	0.61	-1.3
1,987,109	+		GFF1960	0.62	+0.0
1,987,109	+		GFF1960	0.62	-1.1
1,987,109	+		GFF1960	0.62	-1.3
1,987,110	-		GFF1960	0.62	+0.8
1,987,117	-		GFF1960	0.62	+0.4
1,987,118	-		GFF1960	0.62	-0.4
1,987,120	+		GFF1960	0.63	+0.4
1,987,120	+		GFF1960	0.63	-1.7
1,987,140	+		GFF1960	0.65	+0.3
1,987,142	-		GFF1960	0.65	-1.7
1,987,183	+		GFF1960	0.69	-0.1
1,987,208	-		GFF1960	0.71	-1.4
1,987,223	+		GFF1960	0.73	-1.1
1,987,234	-		GFF1960	0.74	+1.0
1,987,241	+		GFF1960	0.74	-0.8
1,987,258	+		GFF1960	0.76	+0.7
1,987,295	+		GFF1960	0.80	-0.1
1,987,295	-		GFF1960	0.80	-1.9
1,987,300	+		GFF1960	0.80	-0.7
1,987,305	+		GFF1960	0.81	+0.5
1,987,313	-		GFF1960	0.82	+0.3
1,987,326	-		GFF1960	0.83	-0.6
1,987,331	+		GFF1960	0.83	+0.3
1,987,331	+		GFF1960	0.83	-1.4
1,987,331	+		GFF1960	0.83	-0.1
1,987,331	+		GFF1960	0.83	-1.1
1,987,336	+		GFF1960	0.84	+1.0
1,987,339	-		GFF1960	0.84	-0.7
1,987,339	-		GFF1960	0.84	-0.5
1,987,344	-		GFF1960	0.85	-0.6
1,987,349	-		GFF1960	0.85	+0.4
1,987,362	+		GFF1960	0.86	+0.3
1,987,377	+		GFF1960	0.88	-1.6
1,987,385	-		GFF1960	0.89	-0.0
1,987,387	-		GFF1960	0.89	-0.2
1,987,395	-		GFF1960	0.90	-0.4
1,987,395	-		GFF1960	0.90	+0.8
1,987,399	+				+0.1
1,987,407	-				-1.3
1,987,407	-				-0.1
1,987,472	+				-1.1
1,987,472	-				+0.1
1,987,495	+				-0.3
1,987,503	-				+1.7
1,987,503	-				-0.8
1,987,523	+				-1.1
1,987,602	+				-1.1
1,987,629	-				-1.3
1,987,670	-				+0.6
1,987,698	+				-0.7
1,987,706	-				-1.3
1,987,726	-				+0.1
1,987,755	+				-0.4
1,987,755	+				-1.2
1,987,786	+				-0.4
1,987,792	-				+0.6
1,987,805	+				-1.4
1,987,813	-				-1.2
1,987,821	-				-2.0
1,987,825	+				+0.1
1,987,835	-				-1.6
1,987,881	+				-1.2
1,987,889	-		GFF1961	0.12	+0.8
1,987,906	+		GFF1961	0.25	-1.3
1,987,918	+		GFF1961	0.34	-1.6
1,987,948	-		GFF1961	0.57	-0.4
1,987,952	+		GFF1961	0.60	+0.9
1,987,955	-		GFF1961	0.63	+1.3
1,987,958	+		GFF1961	0.65	+1.6
1,987,966	-		GFF1961	0.71	-1.2
1,987,966	-		GFF1961	0.71	-0.6
1,987,966	-		GFF1961	0.71	-1.1
1,987,971	-		GFF1961	0.75	+0.6
1,987,971	-		GFF1961	0.75	-0.2
1,987,973	+		GFF1961	0.77	+0.6
1,988,009	-				+1.0
1,988,014	-				+0.9