Strain Fitness in Sphingobium sp. HT1-2 around GFF1920

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,943,700	+		GFF1918	0.85	+0.6
1,943,813	+				+1.2
1,943,821	-				-0.3
1,943,853	-				-0.5
1,943,857	+				+0.9
1,943,865	-				-0.0
1,943,867	+				+0.5
1,943,870	+				-0.5
1,943,873	-				-0.6
1,943,875	-				-1.0
1,943,883	-				-0.7
1,943,914	+				+0.6
1,943,922	+				-0.2
1,943,922	-				-0.8
1,943,930	-				+0.9
1,943,958	-				-1.6
1,943,969	-				+0.8
1,943,982	+		GFF1919	0.11	-0.3
1,943,994	+		GFF1919	0.13	+0.0
1,944,002	-		GFF1919	0.14	-2.5
1,944,002	-		GFF1919	0.14	-1.4
1,944,007	+		GFF1919	0.15	-0.9
1,944,015	-		GFF1919	0.16	-1.6
1,944,015	-		GFF1919	0.16	+0.7
1,944,017	+		GFF1919	0.16	-0.5
1,944,025	-		GFF1919	0.18	-0.2
1,944,033	+		GFF1919	0.19	+0.8
1,944,041	-		GFF1919	0.20	+0.6
1,944,113	-		GFF1919	0.31	+1.0
1,944,124	-		GFF1919	0.33	-1.3
1,944,142	+		GFF1919	0.36	+1.0
1,944,163	+		GFF1919	0.39	-0.5
1,944,188	+		GFF1919	0.43	-0.5
1,944,188	+		GFF1919	0.43	-2.0
1,944,194	-		GFF1919	0.44	-0.5
1,944,196	-		GFF1919	0.44	-1.2
1,944,201	-		GFF1919	0.45	-1.7
1,944,211	+		GFF1919	0.46	-0.4
1,944,260	+		GFF1919	0.54	+0.2
1,944,267	+		GFF1919	0.55	+0.2
1,944,275	-		GFF1919	0.56	-0.2
1,944,277	+		GFF1919	0.57	+0.6
1,944,294	+		GFF1919	0.59	-0.4
1,944,294	-		GFF1919	0.59	-0.8
1,944,304	-		GFF1919	0.61	+0.7
1,944,369	-		GFF1919	0.71	-2.6
1,944,377	+		GFF1919	0.72	-1.1
1,944,390	-		GFF1919	0.74	-1.2
1,944,424	+		GFF1919	0.79	+0.1
1,944,424	+		GFF1919	0.79	+0.5
1,944,429	+		GFF1919	0.80	-0.3
1,944,446	+		GFF1919	0.83	-0.6
1,944,449	+		GFF1919	0.83	+1.2
1,944,451	+		GFF1919	0.84	-0.4
1,944,452	-		GFF1919	0.84	+0.5
1,944,459	-		GFF1919	0.85	-1.2
1,944,505	+				+0.8
1,944,505	+				+0.5
1,944,505	+				+0.4
1,944,513	-				+0.1
1,944,513	-				-0.3
1,944,513	-				-1.0
1,944,526	-				-1.6
1,944,536	-				-2.4
1,944,536	-				-1.2
1,944,543	-				-0.1
1,944,560	-				+1.4
1,944,601	-				+1.3
1,944,653	-				+1.0
1,944,656	+				-0.7
1,944,656	+				-1.1
1,944,658	-				-1.2
1,944,661	+				-0.4
1,944,661	+				-0.8
1,944,666	+				-0.2
1,944,666	+				+0.8
1,944,666	+				+0.0
1,944,666	+				-0.3
1,944,666	+				-0.5
1,944,666	+				-0.3
1,944,669	-				-1.7
1,944,669	-				-1.5
1,944,669	-				-0.5
1,944,671	+				-0.2
1,944,671	+				+0.2
1,944,671	+				-2.0
1,944,674	-				-1.0
1,944,674	-				-0.5
1,944,674	-				+0.1
1,944,674	-				-0.3
1,944,674	-				+0.1
1,944,674	-				+0.5
1,944,674	-				-1.8
1,944,679	-				-0.6
1,944,684	-				-0.4
1,944,706	-				-0.7
1,944,716	+				-0.8
1,944,716	+				-1.5
1,944,718	+				-1.2
1,944,724	-				-1.9
1,944,733	+				-0.5
1,944,735	+				-1.2
1,944,743	-				-1.1
1,944,744	-				-0.9
1,944,754	+				-0.4
1,944,754	+				-1.9
1,944,762	-				-1.8
1,944,762	-				-1.2
1,944,762	-				+1.0
1,944,762	-				-1.2
1,944,762	-				-1.1
1,944,762	-				-0.2
1,944,762	-				-1.2
1,944,767	+				-0.3
1,944,767	+				-1.4
1,944,767	+				-3.1
1,944,777	+				-2.6
1,944,785	-				-1.6
1,944,785	-				-2.0
1,944,787	+				-1.9
1,944,792	-		GFF1920	0.10	-0.4
1,944,795	-		GFF1920	0.10	-1.8
1,944,797	+		GFF1920	0.11	-0.2
1,944,834	+		GFF1920	0.13	-2.0
1,944,875	-		GFF1920	0.16	-0.2
1,944,890	-		GFF1920	0.17	-0.9
1,944,897	+		GFF1920	0.17	-2.2
1,944,937	+		GFF1920	0.20	-1.8
1,944,938	-		GFF1920	0.20	+0.6
1,944,954	+		GFF1920	0.21	+0.7
1,944,962	+		GFF1920	0.21	-1.9
1,944,962	-		GFF1920	0.21	-2.0
1,944,967	+		GFF1920	0.21	-1.1
1,944,979	-		GFF1920	0.22	-0.7
1,944,993	-		GFF1920	0.23	+0.5
1,944,994	+		GFF1920	0.23	-1.4
1,945,010	+		GFF1920	0.24	-0.4
1,945,010	+		GFF1920	0.24	-0.4
1,945,025	+		GFF1920	0.25	-0.4
1,945,033	-		GFF1920	0.26	-0.1
1,945,033	-		GFF1920	0.26	-0.5
1,945,038	+		GFF1920	0.26	-1.4
1,945,038	+		GFF1920	0.26	-0.6
1,945,046	-		GFF1920	0.26	-0.7
1,945,046	-		GFF1920	0.26	-1.2
1,945,054	-		GFF1920	0.27	-0.3
1,945,064	+		GFF1920	0.28	-2.3
1,945,091	+		GFF1920	0.29	-1.7
1,945,091	+		GFF1920	0.29	-1.6
1,945,091	+		GFF1920	0.29	-1.5
1,945,091	+		GFF1920	0.29	-0.5
1,945,091	+		GFF1920	0.29	-0.2
1,945,091	+		GFF1920	0.29	-0.4
1,945,091	+		GFF1920	0.29	-0.1
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.0
1,945,091	+		GFF1920	0.29	-1.9
1,945,093	+		GFF1920	0.29	-1.8
1,945,099	-		GFF1920	0.30	-1.8
1,945,099	-		GFF1920	0.30	-0.8
1,945,099	-		GFF1920	0.30	-1.9
1,945,099	-		GFF1920	0.30	-1.4
1,945,099	-		GFF1920	0.30	-0.1
1,945,099	-		GFF1920	0.30	+0.4
1,945,099	-		GFF1920	0.30	-1.5
1,945,099	-		GFF1920	0.30	-2.0
1,945,101	-		GFF1920	0.30	-1.7
1,945,101	-		GFF1920	0.30	-0.8
1,945,103	+		GFF1920	0.30	-1.3
1,945,122	+		GFF1920	0.31	-1.2
1,945,134	+		GFF1920	0.32	-1.4
1,945,155	+		GFF1920	0.33	-1.9
1,945,155	+		GFF1920	0.33	-2.0
1,945,155	+		GFF1920	0.33	-1.0
1,945,156	-		GFF1920	0.33	-1.1
1,945,163	-		GFF1920	0.34	-1.2
1,945,163	-		GFF1920	0.34	-0.5
1,945,163	-		GFF1920	0.34	-0.9
1,945,163	-		GFF1920	0.34	-0.6
1,945,163	-		GFF1920	0.34	-2.2
1,945,225	+		GFF1920	0.38	-2.9
1,945,225	+		GFF1920	0.38	-1.3
1,945,227	+		GFF1920	0.38	-1.4
1,945,235	-		GFF1920	0.38	-0.8
1,945,235	-		GFF1920	0.38	-1.4
1,945,242	+		GFF1920	0.39	-1.6
1,945,252	-		GFF1920	0.40	-0.2
1,945,312	+		GFF1920	0.43	-0.4
1,945,312	+		GFF1920	0.43	-0.8
1,945,312	+		GFF1920	0.43	-1.0
1,945,312	+		GFF1920	0.43	-2.3
1,945,312	+		GFF1920	0.43	-1.0
1,945,312	+		GFF1920	0.43	-0.4
1,945,312	+		GFF1920	0.43	-1.4
1,945,312	+		GFF1920	0.43	-0.7
1,945,319	-		GFF1920	0.44	-1.9
1,945,320	-		GFF1920	0.44	+0.2
1,945,320	-		GFF1920	0.44	-0.7
1,945,320	-		GFF1920	0.44	-0.3
1,945,320	-		GFF1920	0.44	-0.6
1,945,320	-		GFF1920	0.44	+0.7
1,945,320	-		GFF1920	0.44	-2.2
1,945,320	-		GFF1920	0.44	-0.2
1,945,320	-		GFF1920	0.44	-0.7
1,945,320	-		GFF1920	0.44	-0.2
1,945,320	-		GFF1920	0.44	-1.2
1,945,321	+		GFF1920	0.44	-1.5
1,945,322	+		GFF1920	0.44	-1.9
1,945,330	-		GFF1920	0.45	-0.8
1,945,334	-		GFF1920	0.45	-1.3
1,945,365	-		GFF1920	0.47	-0.9
1,945,378	+		GFF1920	0.48	-2.5
1,945,386	-		GFF1920	0.48	-0.2
1,945,386	-		GFF1920	0.48	-1.9
1,945,412	-		GFF1920	0.50	-1.6
1,945,418	-		GFF1920	0.50	-0.2
1,945,419	+		GFF1920	0.50	-1.5
1,945,427	-		GFF1920	0.51	-1.6
1,945,430	+		GFF1920	0.51	-1.1
1,945,433	-		GFF1920	0.51	-1.6
1,945,450	-		GFF1920	0.52	+0.1
1,945,453	+		GFF1920	0.52	-0.5
1,945,453	+		GFF1920	0.52	-0.8
1,945,463	+		GFF1920	0.53	-0.6
1,945,463	+		GFF1920	0.53	-1.6
1,945,463	+		GFF1920	0.53	-1.2
1,945,471	+		GFF1920	0.53	-1.4
1,945,471	+		GFF1920	0.53	-0.4
1,945,471	+		GFF1920	0.53	-0.2
1,945,471	+		GFF1920	0.53	+0.7
1,945,471	+		GFF1920	0.53	+0.5
1,945,471	+		GFF1920	0.53	-1.7
1,945,471	-		GFF1920	0.53	-0.6
1,945,471	-		GFF1920	0.53	-0.7
1,945,471	-		GFF1920	0.53	-2.2
1,945,478	+		GFF1920	0.54	-0.2
1,945,479	-		GFF1920	0.54	-1.8
1,945,479	-		GFF1920	0.54	-0.4
1,945,485	+		GFF1920	0.54	-2.2
1,945,491	-		GFF1920	0.55	-1.6
1,945,521	+		GFF1920	0.57	-2.3
1,945,566	+		GFF1920	0.60	-1.4
1,945,573	+		GFF1920	0.60	+0.3
1,945,585	-		GFF1920	0.61	+0.9
1,945,594	+		GFF1920	0.61	-0.9
1,945,612	-		GFF1920	0.62	+0.0
1,945,634	+		GFF1920	0.64	-0.4
1,945,642	-		GFF1920	0.64	-0.8
1,945,642	-		GFF1920	0.64	-1.9
1,945,703	-		GFF1920	0.68	-0.3
1,945,705	-		GFF1920	0.68	-1.8
1,945,722	-		GFF1920	0.69	-0.2
1,945,759	-		GFF1920	0.72	+0.1
1,945,772	+		GFF1920	0.73	-0.6
1,945,780	-		GFF1920	0.73	+0.9
1,945,784	+		GFF1920	0.73	-0.6
1,945,794	+		GFF1920	0.74	-2.8
1,945,794	+		GFF1920	0.74	-0.5
1,945,794	+		GFF1920	0.74	-1.2
1,945,794	+		GFF1920	0.74	-1.0
1,945,794	+		GFF1920	0.74	-0.5
1,945,802	-		GFF1920	0.75	-0.2
1,945,807	-		GFF1920	0.75	-0.4
1,945,807	-		GFF1920	0.75	-0.8
1,945,812	+		GFF1920	0.75	+0.4
1,945,840	-		GFF1920	0.77	+0.0
1,945,868	+		GFF1920	0.79	-0.4
1,945,868	+		GFF1920	0.79	-2.2
1,945,868	+		GFF1920	0.79	-1.2
1,945,880	+		GFF1920	0.80	-1.8
1,945,888	-		GFF1920	0.80	-0.4
1,945,900	+		GFF1920	0.81	-1.0
1,945,910	+		GFF1920	0.81	-0.8
1,945,910	+		GFF1920	0.81	-0.1
1,945,910	+		GFF1920	0.81	-1.9
1,945,918	-		GFF1920	0.82	+0.3
1,945,918	-		GFF1920	0.82	-0.7
1,945,929	+		GFF1920	0.83	-1.8
1,945,932	-		GFF1920	0.83	+0.3
1,945,932	-		GFF1920	0.83	-1.9
1,945,932	-		GFF1920	0.83	-2.2
1,945,937	-		GFF1920	0.83	+0.4
1,945,943	+		GFF1920	0.84	-2.1
1,945,948	+		GFF1920	0.84	-0.4
1,945,963	+		GFF1920	0.85	-0.4
1,945,969	-		GFF1920	0.85	-1.6
1,945,978	-		GFF1920	0.86	-2.5
1,945,986	-		GFF1920	0.86	+0.1
1,945,996	-		GFF1920	0.87	-1.3
1,945,996	-		GFF1920	0.87	-0.6
1,946,010	-		GFF1920	0.88	-0.3
1,946,033	-		GFF1920	0.89	-1.9
1,946,068	-				-0.7
1,946,148	-				-2.0
1,946,170	+				-1.2
1,946,170	-				-0.5
1,946,180	-				-1.9
1,946,185	+				+0.5
1,946,196	+				-1.3
1,946,196	+				+0.0
1,946,201	+				+0.4
1,946,204	-				-0.8
1,946,225	+				-0.8
1,946,242	+				-1.2
1,946,242	+				-0.6
1,946,248	+				-2.1
1,946,250	-				+1.1
1,946,250	-				-0.2
1,946,250	-				-2.3
1,946,268	+				-0.5
1,946,268	+				+0.5
1,946,276	-				-2.7
1,946,280	-				+0.4
1,946,301	+				-2.0
1,946,301	+				-0.2
1,946,301	+				+0.8
1,946,354	+		GFF1921	0.11	-0.4
1,946,365	-		GFF1921	0.12	-1.6
1,946,376	+		GFF1921	0.13	-2.7
1,946,381	+		GFF1921	0.13	-2.1
1,946,381	+		GFF1921	0.13	-0.3
1,946,382	+		GFF1921	0.14	-0.3
1,946,382	+		GFF1921	0.14	-1.9
1,946,382	+		GFF1921	0.14	-1.5
1,946,382	+		GFF1921	0.14	+1.1
1,946,382	+		GFF1921	0.14	+0.4
1,946,382	+		GFF1921	0.14	-0.4
1,946,384	-		GFF1921	0.14	-2.5
1,946,384	-		GFF1921	0.14	-1.0
1,946,384	-		GFF1921	0.14	-2.3
1,946,384	-		GFF1921	0.14	+0.2
1,946,389	-		GFF1921	0.14	-0.9
1,946,389	-		GFF1921	0.14	-1.3
1,946,389	-		GFF1921	0.14	-1.3
1,946,390	-		GFF1921	0.14	-2.1
1,946,390	-		GFF1921	0.14	-0.3
1,946,390	-		GFF1921	0.14	-1.8
1,946,390	-		GFF1921	0.14	-1.7
1,946,390	-		GFF1921	0.14	-0.2
1,946,390	-		GFF1921	0.14	-0.9
1,946,390	-		GFF1921	0.14	-0.4
1,946,391	+		GFF1921	0.14	-1.0
1,946,394	-		GFF1921	0.14	-0.3
1,946,423	-		GFF1921	0.17	-1.1
1,946,437	+		GFF1921	0.18	-0.8
1,946,439	+		GFF1921	0.18	-1.6
1,946,447	-		GFF1921	0.18	+0.3
1,946,469	+		GFF1921	0.20	-0.6
1,946,479	+		GFF1921	0.21	-1.3
1,946,480	+		GFF1921	0.21	-0.9
1,946,488	-		GFF1921	0.21	-1.4
1,946,488	-		GFF1921	0.21	-2.7
1,946,507	-		GFF1921	0.23	-1.1
1,946,508	+		GFF1921	0.23	-1.2
1,946,511	-		GFF1921	0.23	+0.2
1,946,543	-		GFF1921	0.25	-1.2
1,946,554	+		GFF1921	0.26	-0.3
1,946,560	+		GFF1921	0.27	-1.5
1,946,573	-		GFF1921	0.28	-0.3
1,946,594	+		GFF1921	0.29	-2.8
1,946,605	+		GFF1921	0.30	-0.9
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