Strain Fitness in Sphingobium sp. HT1-2 around GFF1895

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,917,443	-				-0.0
1,917,460	-				-0.7
1,917,460	-				+0.3
1,917,465	-				-0.9
1,917,472	+				+1.2
1,917,494	+				-0.6
1,917,525	+		GFF1893	0.19	+0.3
1,917,546	-		GFF1893	0.26	+0.0
1,917,551	-		GFF1893	0.27	-0.4
1,917,586	+		GFF1893	0.39	-0.6
1,917,594	-		GFF1893	0.42	-0.1
1,917,602	-		GFF1893	0.44	+0.6
1,917,607	-		GFF1893	0.46	-0.4
1,917,607	-		GFF1893	0.46	-0.9
1,917,672	-		GFF1893	0.67	-0.2
1,917,672	-		GFF1893	0.67	-2.5
1,917,678	+		GFF1893	0.69	+0.7
1,917,689	+		GFF1893	0.73	-0.6
1,917,689	+		GFF1893	0.73	-0.4
1,917,689	+		GFF1893	0.73	-0.7
1,917,689	+		GFF1893	0.73	+1.1
1,917,689	+		GFF1893	0.73	-2.2
1,917,689	+		GFF1893	0.73	+0.1
1,917,689	+		GFF1893	0.73	+0.6
1,917,689	+		GFF1893	0.73	-1.6
1,917,689	+		GFF1893	0.73	-0.2
1,917,689	+		GFF1893	0.73	-0.2
1,917,689	+		GFF1893	0.73	+0.4
1,917,689	+		GFF1893	0.73	-0.6
1,917,689	+		GFF1893	0.73	+0.0
1,917,689	+		GFF1893	0.73	+0.5
1,917,689	+		GFF1893	0.73	-1.1
1,917,689	+		GFF1893	0.73	-1.6
1,917,689	+		GFF1893	0.73	+0.8
1,917,689	+		GFF1893	0.73	+0.6
1,917,689	+		GFF1893	0.73	-1.7
1,917,697	-		GFF1893	0.75	-1.4
1,917,697	-		GFF1893	0.75	-1.7
1,917,697	-		GFF1893	0.75	+0.1
1,917,697	-		GFF1893	0.75	+2.4
1,917,697	-		GFF1893	0.75	+1.0
1,917,697	-		GFF1893	0.75	-0.0
1,917,697	-		GFF1893	0.75	-0.8
1,917,697	-		GFF1893	0.75	-1.1
1,917,697	-		GFF1893	0.75	-0.4
1,917,697	-		GFF1893	0.75	+0.9
1,917,697	-		GFF1893	0.75	-1.5
1,917,697	-		GFF1893	0.75	+0.4
1,917,697	-		GFF1893	0.75	+0.9
1,917,697	-		GFF1893	0.75	+1.0
1,917,697	-		GFF1893	0.75	-2.1
1,917,705	+		GFF1893	0.78	+0.2
1,917,708	+		GFF1893	0.79	+0.0
1,917,708	+		GFF1893	0.79	+0.6
1,917,708	+		GFF1893	0.79	-0.8
1,917,708	+		GFF1893	0.79	-1.4
1,917,708	+		GFF1893	0.79	+0.2
1,917,708	+		GFF1893	0.79	+1.2
1,917,708	-		GFF1893	0.79	+0.5
1,917,708	-		GFF1893	0.79	-1.0
1,917,713	+		GFF1893	0.80	+0.3
1,917,716	-		GFF1893	0.81	+0.9
1,917,716	-		GFF1893	0.81	-0.8
1,917,716	-		GFF1893	0.81	+0.3
1,917,716	-		GFF1893	0.81	+1.6
1,917,716	-		GFF1893	0.81	-0.8
1,917,716	-		GFF1893	0.81	+0.3
1,917,728	+		GFF1893	0.85	+0.0
1,917,728	+		GFF1893	0.85	-1.2
1,917,736	-		GFF1893	0.88	+1.2
1,917,749	+				-1.2
1,917,754	+				+1.1
1,917,883	-				-0.5
1,917,883	-				-0.3
1,917,883	-				-0.8
1,917,883	-				-0.6
1,917,883	-				-0.7
1,917,883	-				+0.3
1,917,883	-				-0.8
1,917,885	+				+1.4
1,917,906	+				+0.4
1,917,906	+				-1.2
1,917,906	+				+0.1
1,917,982	+		GFF1894	0.16	-0.3
1,917,990	-		GFF1894	0.18	-1.0
1,918,039	-		GFF1894	0.27	-0.5
1,918,043	+		GFF1894	0.28	+1.1
1,918,051	-		GFF1894	0.30	-0.6
1,918,051	-		GFF1894	0.30	-0.1
1,918,070	+		GFF1894	0.33	+2.0
1,918,070	+		GFF1894	0.33	-1.4
1,918,075	+		GFF1894	0.34	-0.5
1,918,078	-		GFF1894	0.35	+1.5
1,918,078	-		GFF1894	0.35	+0.6
1,918,083	-		GFF1894	0.36	-0.7
1,918,085	+		GFF1894	0.36	-1.7
1,918,085	+		GFF1894	0.36	+1.2
1,918,090	+		GFF1894	0.37	-0.6
1,918,120	+		GFF1894	0.43	-0.6
1,918,120	+		GFF1894	0.43	-1.9
1,918,128	-		GFF1894	0.44	-0.5
1,918,147	+		GFF1894	0.48	-1.3
1,918,155	-		GFF1894	0.49	-0.8
1,918,175	+		GFF1894	0.53	-0.4
1,918,200	-		GFF1894	0.58	-1.2
1,918,223	+		GFF1894	0.62	-0.3
1,918,231	-		GFF1894	0.64	-0.3
1,918,231	-		GFF1894	0.64	-0.8
1,918,236	+		GFF1894	0.65	-0.5
1,918,236	+		GFF1894	0.65	-0.2
1,918,239	-		GFF1894	0.65	+0.7
1,918,284	+		GFF1894	0.74	-1.1
1,918,429	+				-1.4
1,918,429	+				-1.6
1,918,437	-				+1.8
1,918,437	-				-1.5
1,918,437	-				-0.8
1,918,437	-				-1.2
1,918,463	+				-1.3
1,918,463	+				+0.6
1,918,463	+				-1.7
1,918,463	+				+0.5
1,918,463	+				-0.2
1,918,463	+				-0.7
1,918,463	+				-0.4
1,918,463	+				-1.6
1,918,463	+				-0.3
1,918,471	-				-0.3
1,918,471	-				+1.0
1,918,471	-				+0.6
1,918,471	-				+0.6
1,918,471	-				-0.3
1,918,471	-				+0.8
1,918,479	-				+0.8
1,918,531	-				-0.6
1,918,602	+		GFF1895	0.12	-0.7
1,918,625	+		GFF1895	0.14	+0.2
1,918,656	-		GFF1895	0.16	+0.2
1,918,709	+		GFF1895	0.20	-1.2
1,918,709	+		GFF1895	0.20	-0.3
1,918,717	-		GFF1895	0.21	-0.6
1,918,717	-		GFF1895	0.21	-1.2
1,918,717	-		GFF1895	0.21	+0.7
1,918,717	-		GFF1895	0.21	+1.7
1,918,731	+		GFF1895	0.22	-0.0
1,918,735	-		GFF1895	0.22	-2.0
1,918,772	+		GFF1895	0.25	-0.2
1,918,772	+		GFF1895	0.25	-0.1
1,918,788	+		GFF1895	0.26	-1.4
1,918,791	-		GFF1895	0.26	-0.4
1,918,835	+		GFF1895	0.30	-1.2
1,918,835	+		GFF1895	0.30	-0.4
1,918,851	-		GFF1895	0.31	+1.0
1,918,881	-		GFF1895	0.33	+2.0
1,918,896	-		GFF1895	0.34	+0.4
1,918,897	+		GFF1895	0.34	-1.4
1,918,917	-		GFF1895	0.36	+0.8
1,918,919	-		GFF1895	0.36	-0.2
1,918,947	+		GFF1895	0.38	-0.2
1,918,948	+		GFF1895	0.38	-0.6
1,918,953	+		GFF1895	0.38	+1.4
1,918,971	+		GFF1895	0.39	+0.7
1,918,979	+		GFF1895	0.40	-0.8
1,918,979	+		GFF1895	0.40	-0.6
1,918,979	+		GFF1895	0.40	+1.8
1,918,979	+		GFF1895	0.40	+1.5
1,918,987	-		GFF1895	0.41	-0.5
1,918,988	-		GFF1895	0.41	-1.4
1,918,989	+		GFF1895	0.41	+0.7
1,919,037	+		GFF1895	0.44	+0.6
1,919,063	+		GFF1895	0.46	-0.8
1,919,071	-		GFF1895	0.47	-1.2
1,919,071	-		GFF1895	0.47	-1.4
1,919,093	+		GFF1895	0.48	+0.5
1,919,093	+		GFF1895	0.48	-0.9
1,919,096	-		GFF1895	0.49	-0.3
1,919,096	-		GFF1895	0.49	-1.2
1,919,096	-		GFF1895	0.49	-0.9
1,919,096	-		GFF1895	0.49	-0.5
1,919,096	-		GFF1895	0.49	+0.7
1,919,126	+		GFF1895	0.51	+0.7
1,919,155	+		GFF1895	0.53	-0.3
1,919,161	+		GFF1895	0.53	+2.4
1,919,161	+		GFF1895	0.53	-2.2
1,919,169	-		GFF1895	0.54	+0.2
1,919,169	-		GFF1895	0.54	-0.6
1,919,171	+		GFF1895	0.54	-0.4
1,919,171	+		GFF1895	0.54	-0.3
1,919,179	-		GFF1895	0.55	-0.4
1,919,204	+		GFF1895	0.57	-0.2
1,919,204	+		GFF1895	0.57	-1.2
1,919,218	+		GFF1895	0.58	-0.7
1,919,248	+		GFF1895	0.60	+0.4
1,919,248	+		GFF1895	0.60	-0.3
1,919,248	+		GFF1895	0.60	-0.2
1,919,248	+		GFF1895	0.60	-0.6
1,919,256	-		GFF1895	0.60	-1.2
1,919,256	-		GFF1895	0.60	+0.8
1,919,311	+		GFF1895	0.64	-0.5
1,919,311	+		GFF1895	0.64	+0.6
1,919,311	+		GFF1895	0.64	+0.8
1,919,311	+		GFF1895	0.64	-0.4
1,919,312	-		GFF1895	0.64	-0.6
1,919,319	-		GFF1895	0.65	-1.1
1,919,353	+		GFF1895	0.67	-0.5
1,919,358	-		GFF1895	0.68	-0.4
1,919,371	+		GFF1895	0.69	-1.2
1,919,376	+		GFF1895	0.69	+0.4
1,919,376	+		GFF1895	0.69	+0.6
1,919,406	+		GFF1895	0.71	-0.5
1,919,411	+		GFF1895	0.72	-0.4
1,919,411	+		GFF1895	0.72	+1.1
1,919,433	+		GFF1895	0.73	+0.8
1,919,444	+		GFF1895	0.74	+0.4
1,919,515	+		GFF1895	0.79	-0.5
1,919,603	+		GFF1895	0.86	+1.0
1,919,611	-		GFF1895	0.86	+0.6
1,919,616	+		GFF1895	0.87	-0.2
1,919,622	+		GFF1895	0.87	+0.5
1,919,628	-		GFF1895	0.88	+0.7
1,919,701	+				-0.7
1,919,706	+				-0.4
1,919,730	-				-0.2
1,919,732	+				+1.5
1,919,732	+				-1.7
1,919,732	+				+0.0
1,919,732	+				-0.4
1,919,732	+				-1.7
1,919,740	-				-0.7
1,919,740	-				+1.1
1,919,788	+				-1.0
1,919,788	+				+0.7
1,919,790	-				-1.9
1,919,793	+				-0.1
1,919,796	-				+0.8
1,919,796	-				-1.1
1,919,802	-				-0.3
1,919,802	-				+0.7
1,919,802	-				-0.3
1,919,846	-				+0.0
1,919,859	+				-1.0
1,919,867	-				+1.2
1,919,867	-				+0.4
1,919,932	+				-0.7
1,919,932	+				-1.8
1,919,932	+				+0.6
1,919,937	+				+0.5
1,919,938	-				+0.4
1,919,963	-		GFF1896	0.11	+0.1
1,919,966	-		GFF1896	0.11	+1.1
1,919,982	+		GFF1896	0.13	-0.3
1,920,010	+		GFF1896	0.17	-0.5
1,920,010	+		GFF1896	0.17	-0.2
1,920,015	+		GFF1896	0.18	-1.0
1,920,018	-		GFF1896	0.19	-0.3
1,920,018	-		GFF1896	0.19	+1.1
1,920,018	-		GFF1896	0.19	+0.6
1,920,018	-		GFF1896	0.19	-1.0
1,920,018	-		GFF1896	0.19	-0.4
1,920,018	-		GFF1896	0.19	+0.6
1,920,033	+		GFF1896	0.21	-0.9
1,920,040	-		GFF1896	0.22	-1.0
1,920,053	-		GFF1896	0.24	-0.6
1,920,064	+		GFF1896	0.25	-0.3
1,920,071	+		GFF1896	0.26	+0.5
1,920,076	+		GFF1896	0.27	-1.3
1,920,087	+		GFF1896	0.28	-1.0
1,920,089	-		GFF1896	0.29	+0.6
1,920,095	-		GFF1896	0.29	+0.2
1,920,104	+		GFF1896	0.31	-1.4
1,920,104	+		GFF1896	0.31	+0.1
1,920,104	+		GFF1896	0.31	-1.0
1,920,112	-		GFF1896	0.32	-0.5
1,920,112	-		GFF1896	0.32	-0.0
1,920,112	-		GFF1896	0.32	-0.9
1,920,112	-		GFF1896	0.32	-1.1
1,920,163	-		GFF1896	0.39	-0.9
1,920,165	-		GFF1896	0.39	+0.2
1,920,168	+		GFF1896	0.40	-1.8
1,920,195	+		GFF1896	0.44	-2.2
1,920,195	+		GFF1896	0.44	-0.7
1,920,195	+		GFF1896	0.44	-0.5
1,920,195	+		GFF1896	0.44	-1.2
1,920,195	+		GFF1896	0.44	+1.0
1,920,195	+		GFF1896	0.44	-0.4
1,920,203	-		GFF1896	0.45	+0.6
1,920,203	-		GFF1896	0.45	-1.5
1,920,203	-		GFF1896	0.45	+0.3
1,920,203	-		GFF1896	0.45	-1.4
1,920,203	-		GFF1896	0.45	-0.3
1,920,203	-		GFF1896	0.45	-1.2
1,920,203	-		GFF1896	0.45	-2.0
1,920,203	-		GFF1896	0.45	+1.2
1,920,203	-		GFF1896	0.45	+0.3
1,920,203	-		GFF1896	0.45	-0.6
1,920,203	-		GFF1896	0.45	-0.8
1,920,203	-		GFF1896	0.45	+0.2
1,920,203	-		GFF1896	0.45	+1.5
1,920,203	-		GFF1896	0.45	-0.7
1,920,203	-		GFF1896	0.45	-0.4
1,920,238	+		GFF1896	0.50	-0.4
1,920,240	+		GFF1896	0.50	-0.8
1,920,240	+		GFF1896	0.50	-1.7
1,920,240	+		GFF1896	0.50	+0.6
1,920,240	+		GFF1896	0.50	+1.2
1,920,248	-		GFF1896	0.51	+0.0
1,920,248	-		GFF1896	0.51	-0.1
1,920,266	+		GFF1896	0.54	-1.2
1,920,274	-		GFF1896	0.55	-1.6
1,920,276	+		GFF1896	0.55	-1.9
1,920,276	+		GFF1896	0.55	-0.2
1,920,282	+		GFF1896	0.56	-0.7
1,920,284	-		GFF1896	0.56	+0.1
1,920,284	-		GFF1896	0.56	-0.7
1,920,289	-		GFF1896	0.57	+0.4
1,920,289	-		GFF1896	0.57	-1.4
1,920,308	+		GFF1896	0.60	-0.0
1,920,309	+		GFF1896	0.60	+1.2
1,920,313	+		GFF1896	0.61	+0.8
1,920,321	-		GFF1896	0.62	-0.3
1,920,326	+		GFF1896	0.62	+1.0
1,920,326	+		GFF1896	0.62	-0.0
1,920,331	+		GFF1896	0.63	-0.9
1,920,331	+		GFF1896	0.63	-0.0
1,920,331	+		GFF1896	0.63	-1.0
1,920,333	+		GFF1896	0.63	-0.4
1,920,333	+		GFF1896	0.63	-0.3
1,920,333	+		GFF1896	0.63	-0.6
1,920,333	+		GFF1896	0.63	-0.2
1,920,333	+		GFF1896	0.63	-1.2
1,920,333	+		GFF1896	0.63	+0.1
1,920,333	+		GFF1896	0.63	+1.3
1,920,334	-		GFF1896	0.64	+1.2
1,920,334	-		GFF1896	0.64	-0.3
1,920,339	-		GFF1896	0.64	-1.1
1,920,339	-		GFF1896	0.64	+0.4
1,920,339	-		GFF1896	0.64	-1.1
1,920,339	-		GFF1896	0.64	-0.2
1,920,339	-		GFF1896	0.64	+0.9
1,920,339	-		GFF1896	0.64	-0.2
1,920,339	-		GFF1896	0.64	-1.2
1,920,339	-		GFF1896	0.64	-0.2
1,920,341	-		GFF1896	0.65	-0.6
1,920,341	-		GFF1896	0.65	+1.3
1,920,341	-		GFF1896	0.65	-0.7
1,920,341	-		GFF1896	0.65	-0.7
1,920,341	-		GFF1896	0.65	-1.1
1,920,341	-		GFF1896	0.65	-1.4
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