Strain Fitness in Sphingobium sp. HT1-2 around GFF1864

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,891,528	+				-0.0
1,891,528	-				-0.9
1,891,568	+				-0.2
1,891,576	-				+0.8
1,891,651	+				-1.6
1,891,683	+				+0.3
1,891,688	+				-1.0
1,891,688	+				+0.3
1,891,688	+				-1.1
1,891,688	+				+1.2
1,891,688	+				-1.3
1,891,688	+				-0.9
1,891,688	+				-1.3
1,891,688	+				-0.7
1,891,688	+				-0.6
1,891,688	+				-0.3
1,891,688	+				-1.8
1,891,688	+				+0.1
1,891,688	+				-1.5
1,891,688	+				-0.7
1,891,688	+				-1.1
1,891,688	+				+1.0
1,891,688	+				+0.7
1,891,691	-				-0.4
1,891,693	+				+0.4
1,891,696	-				-1.1
1,891,696	-				+0.7
1,891,696	-				-1.2
1,891,696	-				-0.8
1,891,696	-				-1.1
1,891,696	-				+0.5
1,891,696	-				-0.1
1,891,696	-				-1.4
1,891,696	-				+0.7
1,891,696	-				-1.6
1,891,696	-				-1.0
1,891,696	-				-1.7
1,891,696	-				+0.2
1,891,696	-				+0.5
1,891,696	-				-1.2
1,891,696	-				+1.1
1,891,696	-				+0.4
1,891,696	-				-1.2
1,891,696	-				-2.4
1,891,701	-				-1.5
1,891,717	+				-1.8
1,891,725	-				-0.4
1,891,728	+				-1.4
1,891,733	+				+0.7
1,891,733	+				-0.3
1,891,733	+				-0.7
1,891,738	-				-1.2
1,891,741	-				-0.8
1,891,741	-				-0.3
1,891,741	-				+0.7
1,891,741	-				+0.2
1,891,748	+				-0.9
1,891,748	+				-1.2
1,891,748	+				-1.1
1,891,748	+				-0.8
1,891,748	+				-0.6
1,891,748	+				-0.5
1,891,750	+				-0.7
1,891,751	-				+0.7
1,891,751	-				-0.0
1,891,752	+				+0.7
1,891,752	+				-0.8
1,891,752	+				-0.4
1,891,753	+				-0.6
1,891,756	-		GFF1863	0.11	-0.4
1,891,756	-		GFF1863	0.11	+0.8
1,891,756	-		GFF1863	0.11	-0.8
1,891,757	+		GFF1863	0.11	-0.8
1,891,758	+		GFF1863	0.11	-1.3
1,891,758	+		GFF1863	0.11	+0.6
1,891,758	+		GFF1863	0.11	-0.5
1,891,758	+		GFF1863	0.11	-1.2
1,891,758	+		GFF1863	0.11	-0.0
1,891,760	-		GFF1863	0.12	-0.7
1,891,761	-		GFF1863	0.12	-0.1
1,891,762	+		GFF1863	0.13	+0.1
1,891,763	+		GFF1863	0.13	-2.2
1,891,764	+		GFF1863	0.13	-1.4
1,891,764	+		GFF1863	0.13	-0.1
1,891,764	+		GFF1863	0.13	+0.8
1,891,766	-		GFF1863	0.14	+0.6
1,891,766	-		GFF1863	0.14	-1.3
1,891,766	-		GFF1863	0.14	+0.6
1,891,771	-		GFF1863	0.15	-0.4
1,891,772	-		GFF1863	0.16	-0.3
1,891,772	-		GFF1863	0.16	-1.0
1,891,838	-		GFF1863	0.36	+0.7
1,891,838	-		GFF1863	0.36	+0.4
1,891,838	-		GFF1863	0.36	-1.5
1,891,840	+		GFF1863	0.37	+0.6
1,891,840	+		GFF1863	0.37	-0.7
1,891,880	+		GFF1863	0.49	-0.9
1,891,880	+		GFF1863	0.49	-0.5
1,891,888	-		GFF1863	0.52	-0.5
1,891,888	-		GFF1863	0.52	+1.4
1,891,919	+		GFF1863	0.61	+0.6
1,891,924	+		GFF1863	0.63	-0.1
1,891,927	-		GFF1863	0.64	-0.3
1,891,932	-		GFF1863	0.65	-0.1
1,891,932	-		GFF1863	0.65	-0.4
1,891,971	+		GFF1863	0.77	+0.5
1,891,991	+		GFF1863	0.83	-1.4
1,892,001	+		GFF1863	0.86	-1.7
1,892,009	-		GFF1863	0.89	+0.6
1,892,009	-		GFF1863	0.89	+1.0
1,892,016	+				-1.3
1,892,016	+				-1.8
1,892,021	+				-3.1
1,892,024	-				-1.4
1,892,024	-				-0.6
1,892,024	-				-1.0
1,892,029	-				-0.4
1,892,038	+				-1.6
1,892,046	-				-0.6
1,892,053	-				-1.3
1,892,056	-				+0.8
1,892,057	-				+0.9
1,892,060	+				-0.8
1,892,063	+				+0.8
1,892,067	-				+1.5
1,892,068	-				+1.8
1,892,105	+				+0.9
1,892,105	+				-1.0
1,892,113	-				-1.4
1,892,114	+				+0.5
1,892,122	-				-0.6
1,892,140	+				-0.9
1,892,145	+				-0.5
1,892,152	+				-0.5
1,892,152	+				-1.0
1,892,152	+				-2.4
1,892,152	+				-1.6
1,892,156	+				+0.6
1,892,160	-				+1.5
1,892,160	-				-0.2
1,892,162	-				-0.8
1,892,162	-				+1.9
1,892,163	+				-0.8
1,892,163	+				-1.2
1,892,163	+				+0.1
1,892,163	+				+0.5
1,892,163	+				-1.6
1,892,163	+				-0.2
1,892,163	+				+1.1
1,892,163	+				+0.2
1,892,171	-				-0.5
1,892,171	-				-0.7
1,892,171	-				-0.3
1,892,171	-				-1.1
1,892,171	-				+1.4
1,892,171	-				+0.5
1,892,171	-				-1.2
1,892,173	+				+1.3
1,892,173	+				-0.6
1,892,173	+				+1.3
1,892,173	+				-0.7
1,892,173	+				-2.1
1,892,173	+				-0.6
1,892,173	+				-1.2
1,892,173	+				-0.2
1,892,173	+				-1.1
1,892,173	+				+0.3
1,892,173	+				-0.2
1,892,173	+				-0.9
1,892,173	+				-0.6
1,892,173	+				+0.6
1,892,173	+				-1.0
1,892,173	+				+0.8
1,892,173	+				-0.2
1,892,173	+				-0.8
1,892,173	+				-1.3
1,892,176	-				+0.0
1,892,181	-				-1.4
1,892,181	-				-1.1
1,892,181	-				-0.5
1,892,181	-				+0.1
1,892,181	-				-0.3
1,892,181	-				-1.0
1,892,181	-				+0.4
1,892,181	-				-0.8
1,892,181	-				+0.2
1,892,181	-				-1.3
1,892,181	-				+0.0
1,892,181	-				+0.3
1,892,181	-				+0.2
1,892,181	-				-0.3
1,892,181	-				+1.0
1,892,181	-				-0.8
1,892,181	-				-0.2
1,892,181	-				+0.8
1,892,188	+				+0.3
1,892,190	+				-0.1
1,892,198	+				-0.9
1,892,204	+				-0.7
1,892,204	+				-0.5
1,892,212	-				-0.2
1,892,212	-				-0.5
1,892,212	-				-0.9
1,892,212	-				+0.0
1,892,214	+				+0.8
1,892,241	+				+0.8
1,892,249	-				-1.2
1,892,249	-				-0.2
1,892,251	+				-2.6
1,892,307	-				-1.2
1,892,307	-				+0.0
1,892,312	-				-0.0
1,892,317	+				-0.8
1,892,322	+				+0.3
1,892,322	+				-0.3
1,892,322	+				+0.2
1,892,327	-				-0.2
1,892,332	+				+0.7
1,892,332	+				+0.4
1,892,340	-				-1.3
1,892,340	-				+0.8
1,892,365	+				-0.1
1,892,371	-				-0.2
1,892,371	-				+1.2
1,892,378	-				-0.2
1,892,380	+				-1.4
1,892,386	+				-1.1
1,892,386	+				-1.1
1,892,386	+				-2.0
1,892,388	+				-0.8
1,892,388	-				-0.8
1,892,388	-				-0.4
1,892,396	-				+0.0
1,892,396	-				-0.0
1,892,401	+				-1.8
1,892,401	+				+1.5
1,892,401	+				+0.1
1,892,401	+				-1.2
1,892,401	+				-0.2
1,892,409	-				-0.1
1,892,409	-				+1.3
1,892,409	-				-1.0
1,892,409	-				-0.2
1,892,409	-				+1.3
1,892,466	+				-1.2
1,892,474	-				-1.2
1,892,474	-				-0.0
1,892,492	+				+0.2
1,892,493	-				-0.9
1,892,493	-				-0.2
1,892,522	-				-0.7
1,892,576	-		GFF1864	0.44	+1.6
1,892,603	+		GFF1864	0.67	-1.7
1,892,609	-		GFF1864	0.72	-1.4
1,892,609	-		GFF1864	0.72	+0.4
1,892,611	-		GFF1864	0.74	+0.5
1,892,659	+				+0.1
1,892,662	+				-2.0
1,892,667	-				-1.2
1,892,667	-				+0.1
1,892,667	-				-0.0
1,892,669	+				-2.7
1,892,670	-				+0.8
1,892,670	-				-0.3
1,892,670	-				+0.7
1,892,670	-				-0.5
1,892,670	-				-2.0
1,892,677	-				-2.1
1,892,683	+				+1.8
1,892,684	+				-1.6
1,892,694	+				+0.2
1,892,702	-				-1.6
1,892,708	+				-1.3
1,892,718	+				+0.8
1,892,725	+				-2.3
1,892,726	-				-0.6
1,892,726	-				-1.2
1,892,755	+				-0.5
1,892,755	+				-1.1
1,892,755	-				-0.3
1,892,768	+				+1.1
1,892,776	-				+0.1
1,892,795	-				-0.2
1,892,826	+				+2.3
1,892,826	+				+0.0
1,892,827	-				-2.0
1,892,831	+				+0.4
1,892,831	+				+0.6
1,892,834	-				-1.1
1,892,836	+				-1.5
1,892,839	-				-0.6
1,892,840	+				+0.3
1,892,843	-				+0.6
1,892,846	-				+0.3
1,892,846	-				-0.4
1,892,857	+				+0.1
1,892,865	-				-1.5
1,892,865	-				-1.2
1,892,867	+				-0.8
1,892,867	+				-1.1
1,892,867	+				-0.8
1,892,867	+				-0.9
1,892,867	+				-0.8
1,892,867	+				+1.8
1,892,867	+				-1.2
1,892,867	+				-0.6
1,892,867	+				-0.4
1,892,867	+				+0.7
1,892,867	+				-0.5
1,892,867	+				-1.1
1,892,867	+				-1.5
1,892,867	+				+0.5
1,892,867	+				-1.1
1,892,867	+				-1.6
1,892,867	+				-1.4
1,892,867	+				+0.5
1,892,867	+				-1.0
1,892,867	+				+0.5
1,892,867	+				-2.1
1,892,867	+				-0.8
1,892,867	+				+0.2
1,892,867	+				+0.2
1,892,867	+				-0.2
1,892,867	+				-1.4
1,892,867	+				+0.3
1,892,867	+				+0.5
1,892,867	+				-1.9
1,892,872	+				+0.3
1,892,875	-				+0.3
1,892,875	-				-2.2
1,892,875	-				-0.3
1,892,875	-				-0.2
1,892,875	-				-0.8
1,892,875	-				-0.6
1,892,875	-				-0.9
1,892,875	-				+0.2
1,892,875	-				-0.5
1,892,875	-				-1.5
1,892,875	-				+0.0
1,892,875	-				-0.0
1,892,875	-				-0.3
1,892,875	-				+0.7
1,892,875	-				-1.1
1,892,875	-				-0.3
1,892,875	-				+0.3
1,892,875	-				-0.2
1,892,875	-				-1.2
1,892,875	-				-1.5
1,892,875	-				+0.3
1,892,875	-				+1.4
1,892,875	-				-0.8
1,892,875	-				+0.2
1,892,875	-				+0.7
1,892,875	-				+0.6
1,892,875	-				-0.2
1,892,875	-				+0.0
1,892,875	-				-0.8
1,892,875	-				-1.4
1,892,875	-				+0.3
1,892,875	-				-0.9
1,892,875	-				-0.6
1,892,875	-				+0.6
1,892,875	-				-0.6
1,892,875	-				-3.0
1,892,875	-				+1.6
1,892,875	-				+0.7
1,892,875	-				+0.1
1,892,875	-				+0.2
1,892,882	-				+0.0
1,892,891	+				+0.7
1,892,901	-				+0.5
1,892,904	-				+0.9
1,892,904	-				-1.2
1,892,904	-				-1.9
1,892,904	-				-0.4
1,892,924	+				+0.9
1,892,925	+				+0.1
1,892,939	+		GFF1865	0.12	-0.2
1,892,939	+		GFF1865	0.12	-0.0
1,892,947	-		GFF1865	0.13	+0.4
1,892,972	-		GFF1865	0.18	-0.9
1,892,989	+		GFF1865	0.21	+0.5
1,893,008	-		GFF1865	0.24	-1.0
1,893,016	-		GFF1865	0.25	-0.7
1,893,016	-		GFF1865	0.25	-0.3
1,893,016	-		GFF1865	0.25	-0.5
1,893,017	+		GFF1865	0.26	-1.0
1,893,017	+		GFF1865	0.26	-0.6
1,893,067	-		GFF1865	0.34	+0.3
1,893,089	+		GFF1865	0.38	+0.1
1,893,089	+		GFF1865	0.38	-1.5
1,893,089	+		GFF1865	0.38	-0.3
1,893,089	+		GFF1865	0.38	-0.7
1,893,096	-		GFF1865	0.39	+0.9
1,893,097	-		GFF1865	0.39	-0.2
1,893,097	-		GFF1865	0.39	+1.4
1,893,097	-		GFF1865	0.39	-0.6
1,893,097	-		GFF1865	0.39	-1.1
1,893,104	-		GFF1865	0.41	-0.1
1,893,104	-		GFF1865	0.41	-1.0
1,893,113	+		GFF1865	0.42	-0.5
1,893,122	+		GFF1865	0.44	+0.7
1,893,122	+		GFF1865	0.44	+2.1
1,893,122	+		GFF1865	0.44	-0.5
1,893,122	+		GFF1865	0.44	+1.2
1,893,122	+		GFF1865	0.44	-0.5
1,893,124	+		GFF1865	0.44	-0.2
1,893,125	-		GFF1865	0.44	-0.3
1,893,127	+		GFF1865	0.45	-0.1
1,893,127	+		GFF1865	0.45	-0.0
1,893,130	-		GFF1865	0.45	-0.8
1,893,130	-		GFF1865	0.45	+0.1
1,893,130	-		GFF1865	0.45	-0.8
1,893,130	-		GFF1865	0.45	-0.4
1,893,130	-		GFF1865	0.45	+0.0
1,893,132	+		GFF1865	0.45	-0.8
1,893,135	-		GFF1865	0.46	-1.1
1,893,135	-		GFF1865	0.46	-0.7
1,893,135	-		GFF1865	0.46	+0.5
1,893,135	-		GFF1865	0.46	-1.4
1,893,140	-		GFF1865	0.47	-0.4
1,893,145	+		GFF1865	0.48	-0.7
1,893,147	+		GFF1865	0.48	-0.4
1,893,150	-		GFF1865	0.49	+0.0
1,893,153	-		GFF1865	0.49	-0.7
1,893,160	-		GFF1865	0.50	-1.3
1,893,198	+		GFF1865	0.57	+1.2
1,893,198	+		GFF1865	0.57	+0.5
1,893,265	-		GFF1865	0.68	+1.7
1,893,265	-		GFF1865	0.68	-0.2
1,893,275	-		GFF1865	0.70	-0.6
1,893,275	-		GFF1865	0.70	+0.7
1,893,275	-		GFF1865	0.70	-1.1
1,893,281	-		GFF1865	0.71	-0.5
1,893,295	-		GFF1865	0.74	-0.1
1,893,316	+		GFF1865	0.77	-0.2
1,893,331	+		GFF1865	0.80	-0.3
1,893,331	+		GFF1865	0.80	-0.1
1,893,334	-		GFF1865	0.80	-0.4
1,893,339	-		GFF1865	0.81	-0.3
1,893,339	-		GFF1865	0.81	-1.0
1,893,339	-		GFF1865	0.81	-0.8
1,893,339	-		GFF1865	0.81	-0.9
1,893,351	+		GFF1865	0.83	+1.7
1,893,354	+		GFF1865	0.84	-0.8
1,893,354	-		GFF1865	0.84	+0.8
1,893,362	-		GFF1865	0.85	-0.4
1,893,409	+				+0.2
1,893,458	+				-0.4
1,893,463	+				+0.4
1,893,464	-				-1.0
1,893,466	-				+0.6
1,893,466	-				-0.9
1,893,471	-				+0.8
1,893,471	-				-1.8
1,893,491	+				-1.2
1,893,499	-				+0.5
1,893,518	+				-1.0
1,893,526	-				-0.4
1,893,526	-				-0.5
1,893,539	+				-1.5
1,893,542	-				-1.0
1,893,542	-				-0.7
1,893,547	+				-0.5
1,893,547	+				+0.1
1,893,552	-				+0.2
1,893,552	-				+0.7
1,893,570	-		GFF1866	0.12	-0.7
1,893,576	+		GFF1866	0.13	-1.0
1,893,584	+		GFF1866	0.13	-2.1
1,893,586	+		GFF1866	0.14	+0.8
1,893,589	-		GFF1866	0.14	+0.2
1,893,589	-		GFF1866	0.14	+0.0
1,893,592	-		GFF1866	0.14	-0.2
1,893,594	+		GFF1866	0.15	+1.4
1,893,594	-		GFF1866	0.15	-0.5
1,893,594	-		GFF1866	0.15	-1.4
1,893,601	+		GFF1866	0.15	-0.0
1,893,601	+		GFF1866	0.15	+1.0
1,893,632	+		GFF1866	0.19	+0.5
1,893,632	+		GFF1866	0.19	+0.6
1,893,640	-		GFF1866	0.20	-1.1