Strain Fitness in Sphingobium sp. HT1-2 around GFF1855

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,884,025	-		GFF1853	0.18	-1.0
1,884,025	-		GFF1853	0.18	-1.1
1,884,025	-		GFF1853	0.18	-1.0
1,884,025	-		GFF1853	0.18	-0.6
1,884,040	+		GFF1853	0.20	+0.4
1,884,077	+		GFF1853	0.25	-0.2
1,884,085	-		GFF1853	0.26	-0.4
1,884,112	+		GFF1853	0.29	-0.3
1,884,139	+		GFF1853	0.33	-0.4
1,884,145	+		GFF1853	0.33	-0.7
1,884,153	-		GFF1853	0.34	-0.4
1,884,153	-		GFF1853	0.34	-0.4
1,884,183	+		GFF1853	0.38	-0.3
1,884,188	+		GFF1853	0.39	+0.8
1,884,238	+		GFF1853	0.45	-0.6
1,884,238	+		GFF1853	0.45	-1.0
1,884,238	+		GFF1853	0.45	-0.8
1,884,238	+		GFF1853	0.45	+0.1
1,884,238	+		GFF1853	0.45	-0.2
1,884,238	+		GFF1853	0.45	-1.9
1,884,246	-		GFF1853	0.46	-1.3
1,884,246	-		GFF1853	0.46	-1.3
1,884,246	-		GFF1853	0.46	-1.8
1,884,246	-		GFF1853	0.46	-1.0
1,884,246	-		GFF1853	0.46	-0.5
1,884,248	+		GFF1853	0.46	-0.5
1,884,279	+		GFF1853	0.50	-0.7
1,884,283	+		GFF1853	0.51	-0.6
1,884,292	-		GFF1853	0.52	-0.3
1,884,299	+		GFF1853	0.53	-0.2
1,884,299	+		GFF1853	0.53	-0.5
1,884,301	-		GFF1853	0.53	-0.2
1,884,314	-		GFF1853	0.55	-0.7
1,884,348	+		GFF1853	0.59	-0.2
1,884,374	+		GFF1853	0.62	-1.8
1,884,413	+		GFF1853	0.67	+0.3
1,884,437	+		GFF1853	0.70	-1.0
1,884,487	+		GFF1853	0.77	+0.1
1,884,494	+		GFF1853	0.78	-0.4
1,884,508	+		GFF1853	0.80	-2.2
1,884,508	+		GFF1853	0.80	-0.2
1,884,516	-		GFF1853	0.81	-0.5
1,884,516	-		GFF1853	0.81	-0.9
1,884,516	-		GFF1853	0.81	-0.7
1,884,541	-		GFF1853	0.84	-1.1
1,884,556	-		GFF1853	0.86	-0.5
1,884,556	-		GFF1853	0.86	-0.7
1,884,579	-		GFF1853	0.89	-0.3
1,884,579	-		GFF1853	0.89	-0.7
1,884,618	+				-0.5
1,884,677	+				-1.8
1,884,678	+				+1.0
1,884,678	+				-0.5
1,884,678	-				+0.1
1,884,686	-				+1.0
1,884,727	-		GFF1854	0.16	-1.2
1,884,744	-		GFF1854	0.20	-1.8
1,884,756	-		GFF1854	0.24	-0.1
1,884,765	+		GFF1854	0.26	-0.7
1,884,765	+		GFF1854	0.26	+0.5
1,884,766	-		GFF1854	0.27	-1.0
1,884,771	-		GFF1854	0.28	-1.1
1,884,773	-		GFF1854	0.29	-1.4
1,884,778	-		GFF1854	0.30	-0.5
1,884,778	-		GFF1854	0.30	-1.3
1,884,778	-		GFF1854	0.30	-1.9
1,884,783	-		GFF1854	0.31	-0.3
1,884,783	-		GFF1854	0.31	+0.5
1,884,784	+		GFF1854	0.32	-0.9
1,884,828	-		GFF1854	0.44	-0.9
1,884,828	-		GFF1854	0.44	-0.3
1,884,829	-		GFF1854	0.44	-1.2
1,884,911	-		GFF1854	0.67	+0.5
1,884,911	-		GFF1854	0.67	-0.2
1,884,911	-		GFF1854	0.67	-1.1
1,884,917	-		GFF1854	0.69	-0.6
1,884,935	+		GFF1854	0.74	+0.5
1,884,957	+		GFF1854	0.80	-0.6
1,884,970	-		GFF1854	0.84	-0.4
1,884,979	+		GFF1854	0.86	-0.2
1,884,987	-		GFF1854	0.89	-1.7
1,884,987	-		GFF1854	0.89	+0.2
1,885,034	+				-1.9
1,885,037	-				-1.0
1,885,039	+				-0.6
1,885,047	+				-1.0
1,885,047	+				-0.7
1,885,047	-				-0.6
1,885,052	-				-0.6
1,885,055	-				+1.1
1,885,077	-				-1.0
1,885,094	+				-1.4
1,885,102	-				-2.0
1,885,113	+				-1.5
1,885,113	+				-1.6
1,885,129	-				-0.4
1,885,134	+				-0.4
1,885,142	-		GFF1855	0.10	-0.2
1,885,142	-		GFF1855	0.10	-1.9
1,885,164	+		GFF1855	0.12	-0.6
1,885,191	+		GFF1855	0.14	-0.7
1,885,191	+		GFF1855	0.14	-0.5
1,885,191	+		GFF1855	0.14	-1.9
1,885,199	-		GFF1855	0.15	-1.4
1,885,222	-		GFF1855	0.17	-0.2
1,885,224	-		GFF1855	0.17	-0.3
1,885,235	+		GFF1855	0.18	-0.9
1,885,253	-		GFF1855	0.20	-0.5
1,885,286	+		GFF1855	0.23	+0.5
1,885,299	+		GFF1855	0.24	-0.2
1,885,338	+		GFF1855	0.27	-1.2
1,885,346	-		GFF1855	0.28	+1.6
1,885,357	+		GFF1855	0.29	-0.3
1,885,372	+		GFF1855	0.30	-0.2
1,885,372	+		GFF1855	0.30	-0.5
1,885,376	+		GFF1855	0.31	-0.7
1,885,380	-		GFF1855	0.31	-2.0
1,885,381	+		GFF1855	0.31	-0.2
1,885,381	+		GFF1855	0.31	-0.9
1,885,381	+		GFF1855	0.31	-0.4
1,885,389	-		GFF1855	0.32	-1.0
1,885,389	-		GFF1855	0.32	-0.1
1,885,404	-		GFF1855	0.33	-0.2
1,885,469	+		GFF1855	0.39	-1.1
1,885,500	+		GFF1855	0.41	-1.6
1,885,500	+		GFF1855	0.41	-1.2
1,885,500	+		GFF1855	0.41	-0.2
1,885,508	-		GFF1855	0.42	-0.4
1,885,508	-		GFF1855	0.42	-0.3
1,885,508	-		GFF1855	0.42	-0.5
1,885,508	-		GFF1855	0.42	-0.9
1,885,539	-		GFF1855	0.45	-0.7
1,885,543	+		GFF1855	0.45	-0.2
1,885,576	+		GFF1855	0.48	-1.8
1,885,576	+		GFF1855	0.48	-0.4
1,885,576	+		GFF1855	0.48	-0.2
1,885,581	+		GFF1855	0.48	-0.3
1,885,581	+		GFF1855	0.48	-0.2
1,885,581	+		GFF1855	0.48	-1.0
1,885,581	+		GFF1855	0.48	-0.3
1,885,584	-		GFF1855	0.49	-0.9
1,885,584	-		GFF1855	0.49	-1.0
1,885,584	-		GFF1855	0.49	-1.2
1,885,587	+		GFF1855	0.49	-0.4
1,885,589	-		GFF1855	0.49	-0.9
1,885,589	-		GFF1855	0.49	-1.4
1,885,589	-		GFF1855	0.49	-0.5
1,885,589	-		GFF1855	0.49	-0.0
1,885,589	-		GFF1855	0.49	-1.1
1,885,602	+		GFF1855	0.50	-0.4
1,885,602	+		GFF1855	0.50	-0.4
1,885,602	+		GFF1855	0.50	-0.6
1,885,602	+		GFF1855	0.50	-1.5
1,885,602	+		GFF1855	0.50	-0.4
1,885,602	+		GFF1855	0.50	+0.6
1,885,602	+		GFF1855	0.50	-0.6
1,885,610	-		GFF1855	0.51	-0.2
1,885,610	-		GFF1855	0.51	-0.9
1,885,610	-		GFF1855	0.51	-1.2
1,885,610	-		GFF1855	0.51	-0.2
1,885,610	-		GFF1855	0.51	-0.3
1,885,610	-		GFF1855	0.51	-2.4
1,885,610	-		GFF1855	0.51	-1.0
1,885,668	+		GFF1855	0.56	-0.3
1,885,687	+		GFF1855	0.58	-0.5
1,885,694	-		GFF1855	0.58	-0.9
1,885,696	+		GFF1855	0.58	+0.7
1,885,733	+		GFF1855	0.62	-0.3
1,885,823	+		GFF1855	0.69	-0.2
1,885,845	+		GFF1855	0.71	-0.3
1,885,861	+		GFF1855	0.73	-1.2
1,885,871	+		GFF1855	0.74	-0.6
1,885,871	+		GFF1855	0.74	-1.6
1,885,903	+		GFF1855	0.76	-1.0
1,885,904	-		GFF1855	0.76	-0.3
1,885,911	-		GFF1855	0.77	-1.2
1,885,911	-		GFF1855	0.77	-0.3
1,885,912	-		GFF1855	0.77	-1.0
1,885,927	+		GFF1855	0.78	-1.3
1,885,935	-		GFF1855	0.79	-0.6
1,885,957	+		GFF1855	0.81	-1.3
1,885,982	+		GFF1855	0.83	-0.7
1,885,990	-		GFF1855	0.84	-0.7
1,885,990	-		GFF1855	0.84	-1.0
1,885,992	+		GFF1855	0.84	-1.0
1,885,997	+		GFF1855	0.84	-0.3
1,886,013	+		GFF1855	0.86	-0.5
1,886,061	-				-0.4
1,886,063	-				-0.6
1,886,097	+				-0.8
1,886,097	+				-1.2
1,886,104	+				-0.4
1,886,112	-				-1.4
1,886,112	-				-0.3
1,886,112	-				+0.6
1,886,145	-				-0.7
1,886,177	-				-0.4
1,886,199	+				-1.7
1,886,216	+				-0.6
1,886,224	-				-0.2
1,886,224	-				-0.9
1,886,241	-				-0.6
1,886,241	-				-0.8
1,886,259	+				-1.2
1,886,259	-				-1.0
1,886,273	-				-0.7
1,886,294	-				-0.5
1,886,312	+		GFF1856	0.12	-0.3
1,886,312	+		GFF1856	0.12	-0.5
1,886,312	+		GFF1856	0.12	-0.6
1,886,312	+		GFF1856	0.12	-0.5
1,886,312	+		GFF1856	0.12	-0.5
1,886,320	-		GFF1856	0.13	-1.6
1,886,320	-		GFF1856	0.13	-1.6
1,886,348	+		GFF1856	0.16	-0.5
1,886,353	+		GFF1856	0.17	-1.2
1,886,353	+		GFF1856	0.17	-0.6
1,886,353	+		GFF1856	0.17	-2.3
1,886,353	+		GFF1856	0.17	-1.2
1,886,353	+		GFF1856	0.17	-1.3
1,886,353	+		GFF1856	0.17	-0.6
1,886,353	+		GFF1856	0.17	-0.3
1,886,353	+		GFF1856	0.17	-1.0
1,886,353	+		GFF1856	0.17	-1.1
1,886,353	+		GFF1856	0.17	+0.7
1,886,353	+		GFF1856	0.17	-0.7
1,886,356	-		GFF1856	0.17	-0.9
1,886,361	-		GFF1856	0.18	-0.0
1,886,361	-		GFF1856	0.18	-0.2
1,886,361	-		GFF1856	0.18	-1.1
1,886,361	-		GFF1856	0.18	-0.2
1,886,361	-		GFF1856	0.18	-0.3
1,886,361	-		GFF1856	0.18	-1.6
1,886,361	-		GFF1856	0.18	-0.3
1,886,361	-		GFF1856	0.18	-0.4
1,886,361	-		GFF1856	0.18	-0.2
1,886,368	+		GFF1856	0.19	-1.5
1,886,434	+		GFF1856	0.27	-0.7
1,886,439	+		GFF1856	0.28	-0.9
1,886,447	-		GFF1856	0.29	-0.3
1,886,516	+		GFF1856	0.38	-0.7
1,886,516	+		GFF1856	0.38	-0.6
1,886,516	+		GFF1856	0.38	-0.3
1,886,519	-		GFF1856	0.38	-1.1
1,886,521	+		GFF1856	0.39	-0.6
1,886,524	-		GFF1856	0.39	-0.5
1,886,524	-		GFF1856	0.39	-1.8
1,886,524	-		GFF1856	0.39	-1.0
1,886,524	-		GFF1856	0.39	-0.2
1,886,524	-		GFF1856	0.39	-1.5
1,886,531	-		GFF1856	0.40	-0.3
1,886,533	+		GFF1856	0.40	-0.2
1,886,541	-		GFF1856	0.41	-1.0
1,886,572	+		GFF1856	0.45	-1.0
1,886,575	-		GFF1856	0.46	-0.9
1,886,575	-		GFF1856	0.46	-0.7
1,886,629	-		GFF1856	0.53	-1.2
1,886,653	-		GFF1856	0.56	-0.3
1,886,711	+		GFF1856	0.63	-1.7
1,886,724	-		GFF1856	0.65	-0.9
1,886,727	+		GFF1856	0.65	+0.8
1,886,735	-		GFF1856	0.66	-0.8
1,886,735	-		GFF1856	0.66	-0.4
1,886,772	+		GFF1856	0.71	-0.2
1,886,772	+		GFF1856	0.71	-1.1
1,886,780	-		GFF1856	0.72	-0.5
1,886,780	-		GFF1856	0.72	-1.8
1,886,780	-		GFF1856	0.72	-0.5
1,886,848	+		GFF1856	0.81	-0.5
1,886,848	+		GFF1856	0.81	-1.6
1,886,854	-		GFF1856	0.82	-0.6
1,886,856	-		GFF1856	0.82	-1.0
1,886,865	+		GFF1856	0.83	-0.7
1,886,865	+		GFF1856	0.83	-0.3
1,886,865	+		GFF1856	0.83	-1.3
1,886,865	+		GFF1856	0.83	-1.3
1,886,865	+		GFF1856	0.83	-1.0
1,886,869	+		GFF1856	0.84	-0.9
1,886,873	-		GFF1856	0.84	-0.4
1,886,873	-		GFF1856	0.84	-1.1
1,886,929	+				-1.1
1,886,931	+				-0.4
1,886,939	+				-0.3
1,886,947	-				-0.4
1,886,965	-				-1.2
1,886,970	+				-0.3
1,886,996	-				-0.6
1,886,996	-				-1.5
1,886,997	+				-0.6
1,886,998	-				-0.6
1,887,000	-				-0.2
1,887,011	-				-0.5
1,887,028	+				-0.6
1,887,028	+				-0.2
1,887,036	-		GFF1857	0.10	-0.5
1,887,036	-		GFF1857	0.10	-0.2
1,887,056	-		GFF1857	0.13	-1.3
1,887,072	+		GFF1857	0.15	-0.4
1,887,080	-		GFF1857	0.16	-0.7
1,887,090	-		GFF1857	0.17	-0.8
1,887,136	+		GFF1857	0.23	-1.2
1,887,161	+		GFF1857	0.26	-0.5