Strain Fitness in Sphingobium sp. HT1-2 around GFF1852

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,881,582	+		GFF1850	0.87	-0.7
1,881,628	+				-1.6
1,881,661	-				-2.1
1,881,666	-				-0.3
1,881,682	+				+0.3
1,881,692	-				+1.5
1,881,731	-				-0.3
1,881,733	+				-1.0
1,881,769	+				+0.8
1,881,832	+				-1.2
1,881,832	+				-0.9
1,881,832	+				-0.7
1,881,835	-				+1.2
1,881,849	+				-1.0
1,881,857	-				-0.4
1,881,857	-				-0.4
1,881,899	-				-0.4
1,881,901	+				+0.6
1,881,906	+		GFF1851	0.10	-0.3
1,881,906	+		GFF1851	0.10	-0.2
1,881,906	+		GFF1851	0.10	-0.6
1,881,914	-		GFF1851	0.11	-1.2
1,882,005	-		GFF1851	0.23	-0.9
1,882,014	+		GFF1851	0.24	+1.4
1,882,014	+		GFF1851	0.24	-0.4
1,882,014	-		GFF1851	0.24	-0.2
1,882,014	-		GFF1851	0.24	-0.5
1,882,022	-		GFF1851	0.25	-0.7
1,882,027	-		GFF1851	0.26	-1.2
1,882,027	-		GFF1851	0.26	-0.4
1,882,027	-		GFF1851	0.26	-1.0
1,882,054	-		GFF1851	0.30	-2.0
1,882,078	+		GFF1851	0.33	-1.3
1,882,130	+		GFF1851	0.40	-1.0
1,882,130	+		GFF1851	0.40	-1.2
1,882,138	-		GFF1851	0.41	-0.7
1,882,171	+		GFF1851	0.45	-0.2
1,882,179	-		GFF1851	0.46	-0.6
1,882,208	-		GFF1851	0.50	-1.0
1,882,213	+		GFF1851	0.51	-0.3
1,882,235	+		GFF1851	0.54	-0.4
1,882,235	+		GFF1851	0.54	-0.2
1,882,235	+		GFF1851	0.54	-0.5
1,882,237	+		GFF1851	0.54	-0.2
1,882,245	-		GFF1851	0.55	-0.9
1,882,254	+		GFF1851	0.56	-0.4
1,882,254	+		GFF1851	0.56	-1.1
1,882,259	+		GFF1851	0.57	-1.1
1,882,262	+		GFF1851	0.57	-0.9
1,882,262	+		GFF1851	0.57	-0.9
1,882,262	-		GFF1851	0.57	-0.4
1,882,262	-		GFF1851	0.57	-0.2
1,882,262	-		GFF1851	0.57	-0.7
1,882,267	-		GFF1851	0.58	-0.3
1,882,275	-		GFF1851	0.59	-0.6
1,882,289	-		GFF1851	0.61	-0.8
1,882,311	+		GFF1851	0.64	-1.2
1,882,311	+		GFF1851	0.64	-0.7
1,882,311	+		GFF1851	0.64	-0.5
1,882,311	+		GFF1851	0.64	-0.9
1,882,311	+		GFF1851	0.64	-1.9
1,882,311	+		GFF1851	0.64	-0.2
1,882,311	+		GFF1851	0.64	-0.9
1,882,314	-		GFF1851	0.64	-2.6
1,882,316	+		GFF1851	0.65	-1.2
1,882,319	-		GFF1851	0.65	-1.4
1,882,319	-		GFF1851	0.65	-1.2
1,882,319	-		GFF1851	0.65	-1.4
1,882,319	-		GFF1851	0.65	-0.8
1,882,319	-		GFF1851	0.65	-1.3
1,882,319	-		GFF1851	0.65	-0.5
1,882,319	-		GFF1851	0.65	-0.4
1,882,319	-		GFF1851	0.65	-0.8
1,882,324	-		GFF1851	0.66	-0.8
1,882,335	+		GFF1851	0.67	-0.4
1,882,340	+		GFF1851	0.68	-1.6
1,882,340	+		GFF1851	0.68	-0.4
1,882,340	+		GFF1851	0.68	-1.0
1,882,343	-		GFF1851	0.68	+0.3
1,882,348	-		GFF1851	0.69	+0.5
1,882,348	-		GFF1851	0.69	-0.2
1,882,380	-		GFF1851	0.73	-0.3
1,882,415	+		GFF1851	0.78	+0.4
1,882,469	-		GFF1851	0.85	-0.2
1,882,475	-		GFF1851	0.86	-0.7
1,882,480	-		GFF1851	0.86	-0.3
1,882,527	-				-1.1
1,882,528	-				-0.3
1,882,537	+				-0.7
1,882,567	+				-0.5
1,882,567	+				-0.2
1,882,578	+				-1.2
1,882,678	+				-1.4
1,882,681	-				-0.8
1,882,686	-				-1.8
1,882,686	-				-1.6
1,882,701	-				-1.0
1,882,763	-		GFF1852	0.14	+0.8
1,882,792	+		GFF1852	0.16	-1.4
1,882,800	-		GFF1852	0.17	-0.2
1,882,837	-		GFF1852	0.20	-1.0
1,882,854	+		GFF1852	0.21	-0.3
1,882,859	+		GFF1852	0.21	+0.3
1,882,859	+		GFF1852	0.21	-0.2
1,882,859	+		GFF1852	0.21	-0.5
1,882,859	+		GFF1852	0.21	-1.0
1,882,885	+		GFF1852	0.23	-0.4
1,882,890	+		GFF1852	0.24	+1.6
1,882,893	+		GFF1852	0.24	-1.6
1,882,893	-		GFF1852	0.24	-0.8
1,882,893	-		GFF1852	0.24	-1.6
1,882,893	-		GFF1852	0.24	-1.0
1,882,893	-		GFF1852	0.24	-1.1
1,882,917	+		GFF1852	0.26	-0.9
1,882,922	+		GFF1852	0.26	-0.3
1,882,927	+		GFF1852	0.27	+0.3
1,882,927	+		GFF1852	0.27	-1.4
1,882,927	+		GFF1852	0.27	-0.5
1,882,927	+		GFF1852	0.27	-1.0
1,882,935	-		GFF1852	0.27	-0.8
1,882,935	-		GFF1852	0.27	-1.0
1,882,935	-		GFF1852	0.27	-1.3
1,883,011	-		GFF1852	0.33	-1.2
1,883,013	+		GFF1852	0.33	-2.2
1,883,020	-		GFF1852	0.34	-0.7
1,883,020	-		GFF1852	0.34	-0.4
1,883,020	-		GFF1852	0.34	-0.6
1,883,066	+		GFF1852	0.37	-1.9
1,883,066	+		GFF1852	0.37	-0.3
1,883,074	-		GFF1852	0.38	-1.7
1,883,074	-		GFF1852	0.38	-0.2
1,883,088	+		GFF1852	0.39	-0.5
1,883,096	-		GFF1852	0.40	-1.4
1,883,096	-		GFF1852	0.40	-1.0
1,883,119	-		GFF1852	0.41	-1.2
1,883,152	+		GFF1852	0.44	-0.3
1,883,152	+		GFF1852	0.44	-1.1
1,883,165	-		GFF1852	0.45	-0.3
1,883,181	+		GFF1852	0.46	-0.4
1,883,189	-		GFF1852	0.47	-1.3
1,883,202	+		GFF1852	0.48	-0.1
1,883,203	-		GFF1852	0.48	-0.8
1,883,212	+		GFF1852	0.48	+0.2
1,883,260	-		GFF1852	0.52	-0.6
1,883,275	+		GFF1852	0.53	-0.2
1,883,278	-		GFF1852	0.54	-1.0
1,883,282	-		GFF1852	0.54	-0.9
1,883,296	+		GFF1852	0.55	-0.7
1,883,296	+		GFF1852	0.55	-0.3
1,883,305	-		GFF1852	0.56	+0.6
1,883,324	+		GFF1852	0.57	-0.9
1,883,324	+		GFF1852	0.57	-1.4
1,883,335	-		GFF1852	0.58	-0.6
1,883,337	-		GFF1852	0.58	-1.2
1,883,337	-		GFF1852	0.58	-1.0
1,883,354	+		GFF1852	0.59	-0.2
1,883,362	-		GFF1852	0.60	-0.7
1,883,372	-		GFF1852	0.61	-1.0
1,883,372	-		GFF1852	0.61	-0.2
1,883,380	+		GFF1852	0.61	-0.9
1,883,388	-		GFF1852	0.62	-0.5
1,883,393	-		GFF1852	0.62	-0.4
1,883,429	-		GFF1852	0.65	-0.7
1,883,497	+		GFF1852	0.70	-0.9
1,883,497	+		GFF1852	0.70	-0.4
1,883,505	-		GFF1852	0.71	-1.4
1,883,505	-		GFF1852	0.71	-0.2
1,883,527	+		GFF1852	0.73	-0.3
1,883,527	+		GFF1852	0.73	-1.4
1,883,535	-		GFF1852	0.73	-0.7
1,883,551	-		GFF1852	0.75	-0.5
1,883,567	-		GFF1852	0.76	-1.5
1,883,603	+		GFF1852	0.79	-1.7
1,883,660	+		GFF1852	0.83	-0.4
1,883,671	+		GFF1852	0.84	-0.5
1,883,671	+		GFF1852	0.84	-0.2
1,883,679	-		GFF1852	0.84	-0.3
1,883,679	-		GFF1852	0.84	-1.8
1,883,679	-		GFF1852	0.84	-1.5
1,883,679	-		GFF1852	0.84	+0.4
1,883,679	-		GFF1852	0.84	-1.7
1,883,688	+		GFF1852	0.85	-0.2
1,883,706	+		GFF1852	0.87	+0.0
1,883,748	+		GFF1852	0.90	-0.2
1,883,753	+				-0.8
1,883,756	-				-0.7
1,883,776	+				-1.7
1,883,785	+				-0.4
1,883,789	-				-0.8
1,883,790	+				-0.2
1,883,841	-				+0.6
1,883,902	-				+0.9
1,883,902	-				-0.7
1,883,921	-				-0.4
1,883,936	+				-0.6
1,883,938	+				-0.3
1,883,938	+				+0.2
1,883,938	+				-1.3
1,883,938	+				-0.2
1,883,944	-				+0.8
1,883,946	-				+0.5
1,883,984	+		GFF1853	0.13	-1.0
1,884,017	+		GFF1853	0.17	-1.0
1,884,017	+		GFF1853	0.17	-0.2
1,884,017	+		GFF1853	0.17	-3.2
1,884,017	+		GFF1853	0.17	-1.3
1,884,017	+		GFF1853	0.17	-2.4
1,884,025	-		GFF1853	0.18	-1.0
1,884,025	-		GFF1853	0.18	-1.1
1,884,025	-		GFF1853	0.18	-1.0
1,884,025	-		GFF1853	0.18	-0.6
1,884,040	+		GFF1853	0.20	+0.4
1,884,077	+		GFF1853	0.25	-0.2
1,884,085	-		GFF1853	0.26	-0.4
1,884,112	+		GFF1853	0.29	-0.3
1,884,139	+		GFF1853	0.33	-0.4
1,884,145	+		GFF1853	0.33	-0.7
1,884,153	-		GFF1853	0.34	-0.4
1,884,153	-		GFF1853	0.34	-0.4
1,884,183	+		GFF1853	0.38	-0.3
1,884,188	+		GFF1853	0.39	+0.8
1,884,238	+		GFF1853	0.45	-0.6
1,884,238	+		GFF1853	0.45	-1.0
1,884,238	+		GFF1853	0.45	-0.8
1,884,238	+		GFF1853	0.45	+0.1
1,884,238	+		GFF1853	0.45	-0.2
1,884,238	+		GFF1853	0.45	-1.9
1,884,246	-		GFF1853	0.46	-1.3
1,884,246	-		GFF1853	0.46	-1.3
1,884,246	-		GFF1853	0.46	-1.8
1,884,246	-		GFF1853	0.46	-1.0
1,884,246	-		GFF1853	0.46	-0.5
1,884,248	+		GFF1853	0.46	-0.5
1,884,279	+		GFF1853	0.50	-0.7
1,884,283	+		GFF1853	0.51	-0.6
1,884,292	-		GFF1853	0.52	-0.3
1,884,299	+		GFF1853	0.53	-0.2
1,884,299	+		GFF1853	0.53	-0.5
1,884,301	-		GFF1853	0.53	-0.2
1,884,314	-		GFF1853	0.55	-0.7
1,884,348	+		GFF1853	0.59	-0.2
1,884,374	+		GFF1853	0.62	-1.8
1,884,413	+		GFF1853	0.67	+0.3
1,884,437	+		GFF1853	0.70	-1.0
1,884,487	+		GFF1853	0.77	+0.1
1,884,494	+		GFF1853	0.78	-0.4
1,884,508	+		GFF1853	0.80	-2.2
1,884,508	+		GFF1853	0.80	-0.2
1,884,516	-		GFF1853	0.81	-0.5
1,884,516	-		GFF1853	0.81	-0.9
1,884,516	-		GFF1853	0.81	-0.7
1,884,541	-		GFF1853	0.84	-1.1
1,884,556	-		GFF1853	0.86	-0.5
1,884,556	-		GFF1853	0.86	-0.7
1,884,579	-		GFF1853	0.89	-0.3
1,884,579	-		GFF1853	0.89	-0.7
1,884,618	+				-0.5
1,884,677	+				-1.8
1,884,678	+				+1.0
1,884,678	+				-0.5
1,884,678	-				+0.1
1,884,686	-				+1.0
1,884,727	-		GFF1854	0.16	-1.2
1,884,744	-		GFF1854	0.20	-1.8
1,884,756	-		GFF1854	0.24	-0.1
1,884,765	+		GFF1854	0.26	-0.7
1,884,765	+		GFF1854	0.26	+0.5
1,884,766	-		GFF1854	0.27	-1.0
1,884,771	-		GFF1854	0.28	-1.1
1,884,773	-		GFF1854	0.29	-1.4
1,884,778	-		GFF1854	0.30	-0.5
1,884,778	-		GFF1854	0.30	-1.3
1,884,778	-		GFF1854	0.30	-1.9
1,884,783	-		GFF1854	0.31	-0.3
1,884,783	-		GFF1854	0.31	+0.5
1,884,784	+		GFF1854	0.32	-0.9
1,884,828	-		GFF1854	0.44	-0.9
1,884,828	-		GFF1854	0.44	-0.3
1,884,829	-		GFF1854	0.44	-1.2