Strain Fitness in Sphingobium sp. HT1-2 around GFF1809

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,829,965	+		GFF1807	0.76	+2.0
1,829,981	-		GFF1807	0.78	-2.0
1,830,008	+		GFF1807	0.81	-1.5
1,830,008	+		GFF1807	0.81	-0.5
1,830,008	+		GFF1807	0.81	-0.5
1,830,008	+		GFF1807	0.81	-0.4
1,830,031	+		GFF1807	0.84	-1.3
1,830,045	+		GFF1807	0.86	-0.7
1,830,085	+				-0.3
1,830,085	+				-0.5
1,830,086	+				-1.4
1,830,091	+				-1.7
1,830,091	+				-0.4
1,830,093	-				-0.9
1,830,093	-				-0.6
1,830,093	-				+1.1
1,830,094	-				+0.6
1,830,096	-				-2.2
1,830,098	+				-1.8
1,830,099	-				+0.3
1,830,117	+				+1.2
1,830,117	+				-0.2
1,830,123	-				+0.8
1,830,125	-				-0.4
1,830,154	-				+1.1
1,830,174	+				-1.7
1,830,174	+				+0.0
1,830,174	+				-0.4
1,830,174	+				-0.9
1,830,174	+				-0.1
1,830,182	-		GFF1808	0.11	-0.5
1,830,182	-		GFF1808	0.11	+0.6
1,830,182	-		GFF1808	0.11	+1.3
1,830,182	-		GFF1808	0.11	-2.2
1,830,182	-		GFF1808	0.11	-1.0
1,830,182	-		GFF1808	0.11	-0.4
1,830,182	-		GFF1808	0.11	-0.9
1,830,217	-		GFF1808	0.16	-1.6
1,830,217	-		GFF1808	0.16	-1.5
1,830,225	-		GFF1808	0.17	-0.3
1,830,232	-		GFF1808	0.18	+0.1
1,830,232	-		GFF1808	0.18	+0.1
1,830,252	+		GFF1808	0.20	+0.7
1,830,257	+		GFF1808	0.21	+0.3
1,830,298	+		GFF1808	0.27	-1.0
1,830,307	-		GFF1808	0.28	+1.1
1,830,337	+		GFF1808	0.32	-0.0
1,830,337	+		GFF1808	0.32	-0.5
1,830,357	+		GFF1808	0.35	+0.2
1,830,365	-		GFF1808	0.36	-1.0
1,830,371	+		GFF1808	0.37	+0.4
1,830,371	+		GFF1808	0.37	+0.3
1,830,371	+		GFF1808	0.37	+0.3
1,830,371	+		GFF1808	0.37	-0.4
1,830,391	+		GFF1808	0.39	+1.6
1,830,400	-		GFF1808	0.41	+1.3
1,830,406	-		GFF1808	0.41	+0.4
1,830,407	+		GFF1808	0.42	+0.3
1,830,437	+		GFF1808	0.46	-2.2
1,830,440	-		GFF1808	0.46	-1.2
1,830,442	+		GFF1808	0.46	-1.7
1,830,442	+		GFF1808	0.46	+0.6
1,830,442	+		GFF1808	0.46	-1.9
1,830,442	+		GFF1808	0.46	-0.3
1,830,442	+		GFF1808	0.46	-0.2
1,830,450	-		GFF1808	0.47	-0.4
1,830,450	-		GFF1808	0.47	-1.7
1,830,450	-		GFF1808	0.47	-0.6
1,830,471	-		GFF1808	0.50	+1.0
1,830,473	+		GFF1808	0.51	-1.9
1,830,481	-		GFF1808	0.52	-0.1
1,830,492	-		GFF1808	0.53	-1.0
1,830,492	-		GFF1808	0.53	-0.6
1,830,502	+		GFF1808	0.55	-1.0
1,830,509	-		GFF1808	0.55	-0.5
1,830,527	+		GFF1808	0.58	+0.1
1,830,527	+		GFF1808	0.58	+0.4
1,830,540	-		GFF1808	0.60	+0.2
1,830,551	+		GFF1808	0.61	+0.4
1,830,553	+		GFF1808	0.61	-1.0
1,830,591	+		GFF1808	0.67	-0.7
1,830,591	+		GFF1808	0.67	-0.5
1,830,637	-		GFF1808	0.73	-0.5
1,830,689	+		GFF1808	0.80	+0.8
1,830,693	+		GFF1808	0.81	-0.6
1,830,696	-		GFF1808	0.81	-0.5
1,830,698	+		GFF1808	0.81	-1.5
1,830,713	+		GFF1808	0.83	-2.0
1,830,726	-		GFF1808	0.85	+0.7
1,830,728	+		GFF1808	0.85	-0.1
1,830,748	+		GFF1808	0.88	-0.7
1,830,750	-		GFF1808	0.88	-1.0
1,830,756	-		GFF1808	0.89	-1.1
1,830,774	+				+0.5
1,830,774	+				+0.5
1,830,811	-				+1.0
1,830,820	+				+0.4
1,830,826	-				+0.5
1,830,828	-				+0.2
1,830,833	+				-0.7
1,830,858	+				+1.9
1,830,866	-				-0.0
1,830,867	+				+0.3
1,830,884	+				+0.2
1,830,884	+				+1.8
1,830,884	+				-0.6
1,830,885	+				+1.3
1,830,885	+				-0.6
1,830,885	+				-0.5
1,830,885	+				+0.3
1,830,885	+				-0.0
1,830,892	-				-0.6
1,830,893	-				-0.6
1,830,893	-				+0.9
1,830,893	-				+0.2
1,830,893	-				+1.4
1,830,893	-				+0.8
1,830,893	-				-0.7
1,830,893	-				+0.6
1,830,893	-				-0.3
1,830,893	-				+1.3
1,830,899	+				-1.0
1,830,904	+				+0.5
1,830,904	+				+0.2
1,830,904	+				-0.8
1,830,904	+				-0.4
1,830,904	+				+1.3
1,830,907	-				-1.7
1,830,912	-				-1.4
1,830,912	-				+0.3
1,830,912	-				-1.4
1,830,912	-				-3.1
1,830,912	-				-0.9
1,830,912	-				-0.0
1,830,921	-				-2.0
1,830,922	-				-0.2
1,830,926	-				-1.1
1,830,926	-				-1.7
1,830,949	+				+0.1
1,830,950	+				-0.2
1,830,950	+				+0.2
1,830,957	-				-0.5
1,830,957	-				-0.4
1,830,957	-				-0.2
1,830,957	-				-0.2
1,830,957	-				+0.5
1,830,958	-				-1.3
1,830,958	-				+0.4
1,830,958	-				+1.5
1,830,958	-				+0.1
1,830,973	+				+0.5
1,830,974	+				+1.2
1,830,978	+				-2.2
1,830,998	+				+0.2
1,831,012	+				-0.9
1,831,020	-				-0.7
1,831,049	+				-1.8
1,831,070	-		GFF1809	0.10	-1.9
1,831,078	-		GFF1809	0.11	-0.0
1,831,082	+		GFF1809	0.11	+0.7
1,831,082	+		GFF1809	0.11	-0.5
1,831,082	+		GFF1809	0.11	+0.3
1,831,082	+		GFF1809	0.11	-1.3
1,831,082	+		GFF1809	0.11	+0.3
1,831,082	+		GFF1809	0.11	-1.9
1,831,082	+		GFF1809	0.11	+0.9
1,831,082	+		GFF1809	0.11	-2.0
1,831,090	-		GFF1809	0.12	+0.1
1,831,090	-		GFF1809	0.12	-1.8
1,831,102	+		GFF1809	0.13	-0.1
1,831,160	+		GFF1809	0.17	+0.0
1,831,175	+		GFF1809	0.18	-0.7
1,831,175	+		GFF1809	0.18	-0.4
1,831,183	-		GFF1809	0.19	+1.3
1,831,183	-		GFF1809	0.19	+0.1
1,831,183	-		GFF1809	0.19	-1.4
1,831,183	-		GFF1809	0.19	-2.0
1,831,196	+		GFF1809	0.20	-1.7
1,831,199	-		GFF1809	0.20	+1.2
1,831,202	+		GFF1809	0.21	+1.1
1,831,204	-		GFF1809	0.21	-1.8
1,831,204	-		GFF1809	0.21	-1.4
1,831,217	+		GFF1809	0.22	+0.3
1,831,217	+		GFF1809	0.22	+0.8
1,831,225	-		GFF1809	0.22	+0.4
1,831,251	+		GFF1809	0.24	-0.4
1,831,277	+		GFF1809	0.26	-0.2
1,831,277	+		GFF1809	0.26	-0.0
1,831,277	+		GFF1809	0.26	-2.2
1,831,285	-		GFF1809	0.27	+0.3
1,831,298	+		GFF1809	0.28	+0.6
1,831,308	+		GFF1809	0.29	+0.4
1,831,316	-		GFF1809	0.30	+0.9
1,831,316	-		GFF1809	0.30	+1.4
1,831,340	-		GFF1809	0.31	-0.1
1,831,348	-		GFF1809	0.32	+0.7
1,831,373	+		GFF1809	0.34	-0.1
1,831,374	+		GFF1809	0.34	+0.6
1,831,378	+		GFF1809	0.34	-0.1
1,831,391	+		GFF1809	0.35	+0.5
1,831,392	-		GFF1809	0.36	+1.5
1,831,409	-		GFF1809	0.37	-1.2
1,831,409	-		GFF1809	0.37	+0.0
1,831,409	-		GFF1809	0.37	+0.1
1,831,411	+		GFF1809	0.37	-0.3
1,831,411	+		GFF1809	0.37	+1.4
1,831,414	-		GFF1809	0.37	+1.3
1,831,416	+		GFF1809	0.37	+1.0
1,831,457	+		GFF1809	0.41	+0.2
1,831,465	-		GFF1809	0.41	-1.5
1,831,465	-		GFF1809	0.41	-0.5
1,831,465	-		GFF1809	0.41	+0.4
1,831,480	-		GFF1809	0.42	-2.3
1,831,502	+		GFF1809	0.44	+0.0
1,831,502	+		GFF1809	0.44	+1.4
1,831,503	-		GFF1809	0.44	-0.8
1,831,510	-		GFF1809	0.45	-1.7
1,831,510	-		GFF1809	0.45	-0.2
1,831,510	-		GFF1809	0.45	+0.6
1,831,515	-		GFF1809	0.45	-0.6
1,831,525	+		GFF1809	0.46	+0.4
1,831,531	+		GFF1809	0.46	+0.5
1,831,534	-		GFF1809	0.47	+0.2
1,831,539	-		GFF1809	0.47	-1.0
1,831,562	-		GFF1809	0.49	-2.4
1,831,562	-		GFF1809	0.49	+0.8
1,831,569	+		GFF1809	0.49	+0.5
1,831,572	-		GFF1809	0.50	+1.4
1,831,572	-		GFF1809	0.50	-1.5
1,831,577	-		GFF1809	0.50	-2.2
1,831,577	-		GFF1809	0.50	+0.5
1,831,577	-		GFF1809	0.50	-1.0
1,831,578	-		GFF1809	0.50	-0.7
1,831,582	+		GFF1809	0.50	+0.0
1,831,590	-		GFF1809	0.51	-0.9
1,831,590	-		GFF1809	0.51	-0.7
1,831,591	-		GFF1809	0.51	+0.5
1,831,591	-		GFF1809	0.51	-0.2
1,831,607	-		GFF1809	0.52	-1.7
1,831,614	+		GFF1809	0.53	+0.4
1,831,614	+		GFF1809	0.53	+0.7
1,831,614	+		GFF1809	0.53	+0.6
1,831,614	+		GFF1809	0.53	-0.4
1,831,614	+		GFF1809	0.53	-0.2
1,831,614	+		GFF1809	0.53	+0.2
1,831,614	+		GFF1809	0.53	+0.8
1,831,614	+		GFF1809	0.53	+1.4
1,831,614	+		GFF1809	0.53	-0.8
1,831,617	-		GFF1809	0.53	-0.8
1,831,622	-		GFF1809	0.54	-0.2
1,831,622	-		GFF1809	0.54	-1.5
1,831,622	-		GFF1809	0.54	-0.7
1,831,622	-		GFF1809	0.54	+0.1
1,831,622	-		GFF1809	0.54	-0.1
1,831,622	-		GFF1809	0.54	+0.2
1,831,622	-		GFF1809	0.54	-0.3
1,831,622	-		GFF1809	0.54	-0.1
1,831,622	-		GFF1809	0.54	-0.5
1,831,622	-		GFF1809	0.54	-0.5
1,831,636	-		GFF1809	0.55	-0.4
1,831,647	-		GFF1809	0.56	-0.4
1,831,647	-		GFF1809	0.56	-1.1
1,831,659	-		GFF1809	0.57	-0.4
1,831,686	+		GFF1809	0.59	+1.9
1,831,694	-		GFF1809	0.59	-1.0
1,831,695	+		GFF1809	0.59	+1.5
1,831,725	-		GFF1809	0.62	+1.8
1,831,732	-		GFF1809	0.62	-3.1
1,831,734	+		GFF1809	0.62	-1.0
1,831,734	+		GFF1809	0.62	-0.2
1,831,746	+		GFF1809	0.63	-0.3
1,831,746	+		GFF1809	0.63	-1.3
1,831,754	-		GFF1809	0.64	+1.3
1,831,754	-		GFF1809	0.64	-2.1
1,831,766	+		GFF1809	0.65	-0.5
1,831,779	+		GFF1809	0.66	+0.2
1,831,779	+		GFF1809	0.66	-0.5
1,831,779	-		GFF1809	0.66	-2.1
1,831,787	-		GFF1809	0.67	-0.3
1,831,827	+		GFF1809	0.70	-0.0
1,831,827	+		GFF1809	0.70	+0.0
1,831,827	+		GFF1809	0.70	-0.2
1,831,835	-		GFF1809	0.70	-1.6
1,831,835	-		GFF1809	0.70	-0.4
1,831,885	+		GFF1809	0.74	-2.2
1,831,902	+		GFF1809	0.76	+0.5
1,831,911	-		GFF1809	0.76	+0.6
1,831,921	+		GFF1809	0.77	-1.2
1,831,934	-		GFF1809	0.78	+0.3
1,831,937	+		GFF1809	0.78	-0.2
1,831,942	+		GFF1809	0.79	-1.0
1,831,942	+		GFF1809	0.79	-0.7
1,831,942	+		GFF1809	0.79	-1.1
1,831,945	-		GFF1809	0.79	-0.3
1,831,945	-		GFF1809	0.79	+0.7
1,831,950	-		GFF1809	0.79	-0.8
1,831,963	-		GFF1809	0.80	+0.1
1,831,974	+		GFF1809	0.81	+1.1
1,831,974	+		GFF1809	0.81	-0.2
1,831,982	-		GFF1809	0.82	-2.4
1,831,982	-		GFF1809	0.82	+1.4
1,831,995	+		GFF1809	0.83	-0.0
1,832,005	+		GFF1809	0.84	+1.7
1,832,012	-		GFF1809	0.84	-1.0
1,832,013	-		GFF1809	0.84	-1.1
1,832,016	-		GFF1809	0.85	-0.3
1,832,033	+		GFF1809	0.86	-1.5
1,832,041	-		GFF1809	0.87	-1.2
1,832,041	-		GFF1809	0.87	+0.5
1,832,072	-		GFF1809	0.89	-0.1
1,832,076	+		GFF1809	0.89	-1.0
1,832,077	-		GFF1809	0.89	-0.2
1,832,088	+				-0.8
1,832,096	-				-0.7
1,832,096	-				+1.1
1,832,115	-				-0.4
1,832,120	-				-0.6
1,832,145	+				-0.8
1,832,146	+				-2.4
1,832,151	+				-1.2
1,832,159	-				+1.8
1,832,165	+				-1.5
1,832,183	-				+0.1
1,832,193	+				+0.7
1,832,193	+				-0.0
1,832,193	+				+0.2
1,832,196	-				-0.3
1,832,201	-				-0.3
1,832,202	-				+1.8
1,832,202	-				+0.4
1,832,210	+				-1.2
1,832,210	+				+0.4
1,832,218	-				+0.3
1,832,258	-				-1.6
1,832,282	-				-0.2
1,832,303	+				-1.1
1,832,306	-		GFF1810	0.10	-0.5
1,832,318	+		GFF1810	0.11	+0.5
1,832,319	-		GFF1810	0.12	-0.3
1,832,323	+		GFF1810	0.12	-0.2
1,832,331	-		GFF1810	0.13	-1.2
1,832,331	-		GFF1810	0.13	-0.5
1,832,331	-		GFF1810	0.13	-0.7
1,832,331	-		GFF1810	0.13	-1.6
1,832,334	+		GFF1810	0.13	+1.3
1,832,334	+		GFF1810	0.13	-1.1
1,832,334	+		GFF1810	0.13	-0.6
1,832,337	-		GFF1810	0.14	-0.6
1,832,339	-		GFF1810	0.14	-0.5
1,832,339	-		GFF1810	0.14	-0.9
1,832,342	-		GFF1810	0.14	+1.1
1,832,342	-		GFF1810	0.14	-0.8
1,832,346	-		GFF1810	0.15	-1.3
1,832,375	+		GFF1810	0.18	-1.0
1,832,419	+		GFF1810	0.23	+0.6
1,832,427	+		GFF1810	0.24	-1.8
1,832,427	+		GFF1810	0.24	-2.0
1,832,427	+		GFF1810	0.24	-0.4
1,832,435	-		GFF1810	0.25	-1.4
1,832,435	-		GFF1810	0.25	+0.4
1,832,435	-		GFF1810	0.25	+0.6
1,832,435	-		GFF1810	0.25	-1.4
1,832,450	-		GFF1810	0.27	-1.0
1,832,455	-		GFF1810	0.27	-1.1
1,832,455	-		GFF1810	0.27	-1.1
1,832,460	+		GFF1810	0.28	-0.3
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1,832,554	+		GFF1810	0.39	-0.9
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1,832,601	+		GFF1810	0.44	-0.0
1,832,602	-		GFF1810	0.44	-1.7
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1,832,789	+		GFF1810	0.66	-1.7
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1,833,003	+				-0.3
1,833,011	-				+0.4
1,833,035	+				-0.9
1,833,043	-				+1.1
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1,833,076	+				-0.2
1,833,084	+				-0.8
1,833,129	+				+0.6
1,833,130	+				-0.2
1,833,137	-				-0.6
1,833,171	-				-2.0
1,833,184	-				-1.3
1,833,188	-				-0.1
1,833,190	-				-0.5
1,833,201	-				+0.9
1,833,201	-				+0.1