Strain Fitness in Sphingobium sp. HT1-2 around GFF1800

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,820,399	+				-0.0
1,820,399	+				+1.2
1,820,400	+				-2.3
1,820,412	+				-0.3
1,820,423	-				-0.3
1,820,427	-				+0.1
1,820,448	-				-0.1
1,820,452	+				-1.0
1,820,452	+				+0.6
1,820,455	-				-0.1
1,820,460	-				-0.6
1,820,460	-				+0.7
1,820,460	-				-0.7
1,820,460	-				+0.7
1,820,460	-				-1.2
1,820,465	-				-0.1
1,820,470	-				+0.0
1,820,539	-				-0.0
1,820,580	-				+0.4
1,820,580	-				-1.4
1,820,582	+				-1.6
1,820,587	+				-0.8
1,820,592	+				-0.3
1,820,601	+				-1.6
1,820,609	-				-0.3
1,820,634	-				-0.6
1,820,645	+		GFF1799	0.11	+0.1
1,820,656	+		GFF1799	0.13	-2.2
1,820,656	+		GFF1799	0.13	-1.5
1,820,657	+		GFF1799	0.13	-0.8
1,820,658	+		GFF1799	0.13	-1.3
1,820,658	+		GFF1799	0.13	-1.6
1,820,658	+		GFF1799	0.13	-0.2
1,820,658	+		GFF1799	0.13	+0.5
1,820,658	+		GFF1799	0.13	-0.5
1,820,658	+		GFF1799	0.13	-0.2
1,820,658	+		GFF1799	0.13	-1.4
1,820,658	+		GFF1799	0.13	-2.3
1,820,658	+		GFF1799	0.13	-1.0
1,820,658	+		GFF1799	0.13	-2.0
1,820,663	+		GFF1799	0.14	+0.2
1,820,664	+		GFF1799	0.14	-0.5
1,820,664	+		GFF1799	0.14	-0.7
1,820,664	+		GFF1799	0.14	-0.5
1,820,664	-		GFF1799	0.14	+0.8
1,820,666	-		GFF1799	0.14	+0.3
1,820,666	-		GFF1799	0.14	-2.0
1,820,672	-		GFF1799	0.15	-1.3
1,820,678	-		GFF1799	0.16	+1.5
1,820,682	+		GFF1799	0.17	+0.3
1,820,683	+		GFF1799	0.17	-0.8
1,820,689	-		GFF1799	0.18	-0.3
1,820,691	-		GFF1799	0.18	-0.2
1,820,691	-		GFF1799	0.18	+1.8
1,820,730	+		GFF1799	0.24	+0.8
1,820,760	+		GFF1799	0.29	-0.4
1,820,760	+		GFF1799	0.29	+0.2
1,820,779	+		GFF1799	0.32	+0.9
1,820,782	-		GFF1799	0.32	-0.7
1,820,813	+		GFF1799	0.37	+0.5
1,820,834	-		GFF1799	0.40	+1.8
1,820,840	+		GFF1799	0.41	-0.1
1,820,861	+		GFF1799	0.45	-1.5
1,820,869	-		GFF1799	0.46	+0.2
1,820,869	-		GFF1799	0.46	-0.6
1,820,906	+		GFF1799	0.52	+0.3
1,820,914	-		GFF1799	0.53	+2.0
1,820,914	-		GFF1799	0.53	-1.0
1,820,964	+		GFF1799	0.61	-1.0
1,820,972	-		GFF1799	0.62	-0.9
1,820,999	-		GFF1799	0.66	-0.6
1,821,009	+		GFF1799	0.68	+0.3
1,821,009	+		GFF1799	0.68	+0.2
1,821,009	+		GFF1799	0.68	+0.4
1,821,017	-		GFF1799	0.69	+0.3
1,821,083	+		GFF1799	0.79	-1.6
1,821,104	+		GFF1799	0.82	+0.3
1,821,104	+		GFF1799	0.82	-0.3
1,821,110	-		GFF1799	0.83	-0.6
1,821,112	-		GFF1799	0.84	+1.3
1,821,122	-		GFF1799	0.85	-1.9
1,821,148	+		GFF1799	0.89	-1.3
1,821,148	+		GFF1799	0.89	-0.1
1,821,166	+				+0.0
1,821,166	+				-1.5
1,821,166	+				-0.5
1,821,166	+				+1.0
1,821,167	+				+0.3
1,821,174	-				+1.2
1,821,188	+				+0.5
1,821,196	-				-0.6
1,821,203	+				-0.8
1,821,203	+				-0.4
1,821,205	+				+0.7
1,821,211	-				+0.1
1,821,224	+				+0.2
1,821,227	+				-0.4
1,821,232	-				-0.6
1,821,234	-				-0.6
1,821,241	+				-1.2
1,821,249	-				-0.7
1,821,251	+				-1.3
1,821,254	-				-0.6
1,821,257	+				+0.4
1,821,259	-				-0.5
1,821,264	-				+0.2
1,821,287	+				-1.5
1,821,292	+				-0.5
1,821,292	+				-0.8
1,821,295	-				-0.7
1,821,295	-				+0.7
1,821,297	+				-0.0
1,821,297	+				+0.8
1,821,297	+				-0.0
1,821,305	-				-0.3
1,821,317	+				-0.6
1,821,325	+				+0.8
1,821,325	+				+1.1
1,821,364	+				-1.0
1,821,373	-				-1.5
1,821,374	+				+0.2
1,821,395	+				-0.8
1,821,395	+				+0.2
1,821,395	+				-0.4
1,821,395	+				-1.4
1,821,403	-				-1.0
1,821,403	-				+0.4
1,821,403	-				-0.1
1,821,403	-				-0.3
1,821,403	-				+0.2
1,821,403	-				-1.9
1,821,403	-				+1.5
1,821,449	+				-0.6
1,821,462	-				-0.8
1,821,464	+				-0.0
1,821,464	+				-0.4
1,821,467	-				-1.4
1,821,472	-				+1.0
1,821,472	-				-1.2
1,821,477	-				-1.0
1,821,482	-				-0.2
1,821,496	-				-0.3
1,821,497	-				+1.1
1,821,525	-				+0.7
1,821,526	+				-0.9
1,821,526	+				-0.4
1,821,527	+				-1.8
1,821,527	+				-1.2
1,821,527	+				+0.9
1,821,529	-				-0.4
1,821,534	-				-0.4
1,821,535	-				-1.9
1,821,535	-				-1.4
1,821,535	-				+0.3
1,821,566	-				-0.3
1,821,594	+		GFF1800	0.11	-0.2
1,821,617	+		GFF1800	0.12	-2.3
1,821,651	+		GFF1800	0.14	-1.3
1,821,659	-		GFF1800	0.14	-0.5
1,821,673	+		GFF1800	0.15	+0.8
1,821,676	-		GFF1800	0.15	+2.2
1,821,782	-		GFF1800	0.21	+0.2
1,821,814	+		GFF1800	0.23	+0.5
1,821,851	-		GFF1800	0.25	-0.6
1,821,851	-		GFF1800	0.25	-0.6
1,821,853	+		GFF1800	0.25	-1.2
1,821,861	-		GFF1800	0.26	+0.3
1,821,862	-		GFF1800	0.26	-0.0
1,821,862	-		GFF1800	0.26	-0.0
1,821,862	-		GFF1800	0.26	+0.4
1,821,869	-		GFF1800	0.26	-1.1
1,821,893	+		GFF1800	0.28	+0.6
1,821,901	-		GFF1800	0.28	-0.5
1,821,901	-		GFF1800	0.28	-1.9
1,821,911	+		GFF1800	0.28	-0.8
1,821,947	+		GFF1800	0.30	+1.4
1,821,959	+		GFF1800	0.31	-0.5
1,821,981	+		GFF1800	0.32	+0.5
1,822,002	+		GFF1800	0.34	-1.3
1,822,011	+		GFF1800	0.34	-1.1
1,822,021	+		GFF1800	0.35	-0.2
1,822,044	+		GFF1800	0.36	-0.5
1,822,052	-		GFF1800	0.36	+0.4
1,822,060	-		GFF1800	0.37	+0.3
1,822,062	+		GFF1800	0.37	-0.7
1,822,065	-		GFF1800	0.37	+0.4
1,822,081	+		GFF1800	0.38	-0.6
1,822,083	+		GFF1800	0.38	+0.1
1,822,089	-		GFF1800	0.38	-0.3
1,822,089	-		GFF1800	0.38	-1.6
1,822,089	-		GFF1800	0.38	+0.6
1,822,089	-		GFF1800	0.38	+0.5
1,822,104	-		GFF1800	0.39	+0.6
1,822,135	+		GFF1800	0.41	-1.1
1,822,137	-		GFF1800	0.41	-0.3
1,822,141	+		GFF1800	0.41	-1.2
1,822,175	+		GFF1800	0.43	-0.0
1,822,175	+		GFF1800	0.43	-1.6
1,822,183	-		GFF1800	0.44	+0.0
1,822,183	-		GFF1800	0.44	-1.1
1,822,183	-		GFF1800	0.44	-0.8
1,822,187	+		GFF1800	0.44	-1.3
1,822,187	+		GFF1800	0.44	+0.9
1,822,192	+		GFF1800	0.44	+1.0
1,822,192	+		GFF1800	0.44	-0.5
1,822,192	+		GFF1800	0.44	+0.9
1,822,195	-		GFF1800	0.44	+0.9
1,822,195	-		GFF1800	0.44	+1.0
1,822,195	-		GFF1800	0.44	-0.2
1,822,200	+		GFF1800	0.45	-0.9
1,822,200	-		GFF1800	0.45	+0.1
1,822,200	-		GFF1800	0.45	+0.2
1,822,200	-		GFF1800	0.45	-0.3
1,822,200	-		GFF1800	0.45	-0.3
1,822,208	-		GFF1800	0.45	-0.6
1,822,210	+		GFF1800	0.45	+0.0
1,822,211	+		GFF1800	0.45	-0.1
1,822,218	-		GFF1800	0.46	+0.5
1,822,218	-		GFF1800	0.46	-2.1
1,822,218	-		GFF1800	0.46	+0.6
1,822,219	-		GFF1800	0.46	-0.8
1,822,224	+		GFF1800	0.46	+0.2
1,822,232	-		GFF1800	0.46	-1.6
1,822,244	+		GFF1800	0.47	+1.1
1,822,281	+		GFF1800	0.49	-0.5
1,822,281	+		GFF1800	0.49	-0.2
1,822,281	+		GFF1800	0.49	-0.9
1,822,289	+		GFF1800	0.49	-1.1
1,822,289	+		GFF1800	0.49	+0.1
1,822,289	-		GFF1800	0.49	-0.6
1,822,297	-		GFF1800	0.50	-0.5
1,822,338	-		GFF1800	0.52	-0.9
1,822,374	-		GFF1800	0.54	+0.5
1,822,386	+		GFF1800	0.55	+0.0
1,822,395	+		GFF1800	0.55	+0.1
1,822,439	+		GFF1800	0.58	-2.3
1,822,448	-		GFF1800	0.58	-0.0
1,822,453	-		GFF1800	0.59	+1.1
1,822,465	+		GFF1800	0.59	+0.5
1,822,467	+		GFF1800	0.59	-1.3
1,822,467	+		GFF1800	0.59	-0.3
1,822,467	+		GFF1800	0.59	-1.5
1,822,467	+		GFF1800	0.59	-1.4
1,822,475	-		GFF1800	0.60	+1.5
1,822,475	-		GFF1800	0.60	-1.0
1,822,486	+		GFF1800	0.60	-0.5
1,822,499	+		GFF1800	0.61	-0.9
1,822,522	+		GFF1800	0.62	+0.1
1,822,529	+		GFF1800	0.63	-0.8
1,822,530	-		GFF1800	0.63	-0.7
1,822,535	+		GFF1800	0.63	-0.4
1,822,535	+		GFF1800	0.63	-0.4
1,822,543	-		GFF1800	0.64	+1.2
1,822,580	+		GFF1800	0.66	-0.2
1,822,580	+		GFF1800	0.66	-0.2
1,822,580	+		GFF1800	0.66	-1.5
1,822,587	+		GFF1800	0.66	-1.4
1,822,588	-		GFF1800	0.66	+0.3
1,822,590	+		GFF1800	0.66	-0.6
1,822,595	-		GFF1800	0.67	+0.1
1,822,649	+		GFF1800	0.69	-1.7
1,822,649	+		GFF1800	0.69	+0.5
1,822,649	+		GFF1800	0.69	-0.8
1,822,649	+		GFF1800	0.69	-0.7
1,822,649	+		GFF1800	0.69	-1.6
1,822,649	+		GFF1800	0.69	-0.3
1,822,649	+		GFF1800	0.69	-0.4
1,822,649	+		GFF1800	0.69	+0.2
1,822,653	+		GFF1800	0.70	-0.6
1,822,657	-		GFF1800	0.70	-1.8
1,822,657	-		GFF1800	0.70	-0.5
1,822,657	-		GFF1800	0.70	+0.1
1,822,657	-		GFF1800	0.70	-2.3
1,822,657	-		GFF1800	0.70	+1.1
1,822,657	-		GFF1800	0.70	-0.6
1,822,663	-		GFF1800	0.70	-1.4
1,822,689	-		GFF1800	0.72	-0.3
1,822,693	+		GFF1800	0.72	-1.1
1,822,696	-		GFF1800	0.72	-0.7
1,822,696	-		GFF1800	0.72	+0.2
1,822,698	+		GFF1800	0.72	-0.4
1,822,703	+		GFF1800	0.72	-1.7
1,822,703	+		GFF1800	0.72	-0.7
1,822,703	+		GFF1800	0.72	+0.2
1,822,711	-		GFF1800	0.73	-0.4
1,822,712	-		GFF1800	0.73	-0.1
1,822,712	-		GFF1800	0.73	+0.4
1,822,744	+		GFF1800	0.75	-1.0
1,822,771	-		GFF1800	0.76	-0.6
1,822,771	-		GFF1800	0.76	-0.7
1,822,813	-		GFF1800	0.79	-1.6
1,822,834	+		GFF1800	0.80	-0.4
1,822,848	+		GFF1800	0.81	+1.8
1,822,848	+		GFF1800	0.81	-0.7
1,822,848	+		GFF1800	0.81	+0.1
1,822,848	+		GFF1800	0.81	-0.4
1,822,877	-		GFF1800	0.82	+0.9
1,822,891	+		GFF1800	0.83	-1.5
1,822,893	+		GFF1800	0.83	+1.1
1,822,893	+		GFF1800	0.83	-2.1
1,822,893	+		GFF1800	0.83	-0.4
1,822,901	-		GFF1800	0.83	-0.9
1,822,901	-		GFF1800	0.83	+0.4
1,822,901	-		GFF1800	0.83	+0.1
1,822,926	+		GFF1800	0.85	+1.6
1,822,932	+		GFF1800	0.85	-0.5
1,822,933	+		GFF1800	0.85	+0.5
1,822,940	+		GFF1800	0.86	-0.0
1,822,945	+		GFF1800	0.86	+0.7
1,822,948	-		GFF1800	0.86	-0.9
1,822,948	-		GFF1800	0.86	+0.1
1,822,948	-		GFF1800	0.86	+0.3
1,822,950	+		GFF1800	0.86	-0.2
1,822,953	-		GFF1800	0.86	-0.6
1,822,953	-		GFF1800	0.86	+0.1
1,822,964	+		GFF1800	0.87	-0.9
1,823,041	+				-1.0
1,823,041	+				-0.8
1,823,049	-				+0.9
1,823,049	-				-0.2
1,823,053	-				-0.3
1,823,091	+				-0.6
1,823,093	-				-0.7
1,823,121	+				+0.5
1,823,125	+				+0.4
1,823,133	-				+0.6
1,823,133	-				-0.4
1,823,142	+				-0.8
1,823,193	+				-1.4
1,823,193	+				-1.6
1,823,193	+				-0.6
1,823,193	+				-1.3
1,823,193	+				-0.3
1,823,193	+				-1.4
1,823,193	+				-1.1
1,823,201	-				-1.2
1,823,201	-				-2.4
1,823,201	-				-0.7
1,823,201	-				-1.0
1,823,201	-				+0.0
1,823,201	-				-1.0
1,823,232	+				-0.4
1,823,232	-				-1.0
1,823,250	-				-0.2
1,823,260	-				-0.3
1,823,260	-				+0.3
1,823,273	+				-0.4
1,823,273	+				-0.2
1,823,335	+				+0.2
1,823,335	+				-1.3
1,823,335	+				+0.2
1,823,335	+				-1.1
1,823,335	+				-0.4
1,823,343	-				+1.2
1,823,346	+				-0.3
1,823,349	-				-1.5
1,823,363	+		GFF1801	0.16	-0.2
1,823,371	-		GFF1801	0.19	+0.6
1,823,376	+		GFF1801	0.21	+0.5
1,823,376	+		GFF1801	0.21	-0.6
1,823,383	+		GFF1801	0.24	-1.0
1,823,383	-		GFF1801	0.24	-1.0
1,823,395	+		GFF1801	0.30	-0.2
1,823,405	+		GFF1801	0.34	-0.0
1,823,405	+		GFF1801	0.34	+0.8
1,823,418	-		GFF1801	0.40	+0.3
1,823,423	-		GFF1801	0.42	-2.2
1,823,430	+		GFF1801	0.45	+0.6
1,823,435	+		GFF1801	0.48	+0.3
1,823,435	+		GFF1801	0.48	-1.5
1,823,438	-		GFF1801	0.49	+0.2
1,823,438	-		GFF1801	0.49	-1.6
1,823,438	-		GFF1801	0.49	+1.2
1,823,448	-		GFF1801	0.53	-0.6
1,823,448	-		GFF1801	0.53	+0.4
1,823,453	-		GFF1801	0.56	-0.5
1,823,453	-		GFF1801	0.56	-1.4
1,823,453	-		GFF1801	0.56	+0.6
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1,823,455	+		GFF1801	0.56	-2.1
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1,823,515	+		GFF1801	0.83	-0.9
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1,823,515	+		GFF1801	0.83	+1.0
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1,823,556	+				+0.6
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1,823,620	+				-0.7
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1,823,624	+				+1.0
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1,823,693	-				+1.1
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1,824,102	+				-1.1
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1,824,114	+				+0.8
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1,824,196	+				+0.3