Strain Fitness in Sphingobium sp. HT1-2 around GFF1775

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,801,812	+		GFF1772	0.33	-0.7
1,801,817	-		GFF1772	0.35	-0.2
1,801,820	-		GFF1772	0.36	-0.6
1,801,825	-		GFF1772	0.37	+0.1
1,801,829	-		GFF1772	0.38	-1.9
1,801,832	+		GFF1772	0.39	+0.5
1,801,832	+		GFF1772	0.39	+0.3
1,801,832	+		GFF1772	0.39	+0.1
1,801,832	+		GFF1772	0.39	+0.0
1,801,832	+		GFF1772	0.39	-0.3
1,801,832	+		GFF1772	0.39	-1.3
1,801,832	+		GFF1772	0.39	-0.2
1,801,832	+		GFF1772	0.39	+0.5
1,801,835	-		GFF1772	0.40	-0.3
1,801,840	-		GFF1772	0.42	-0.1
1,801,840	-		GFF1772	0.42	-0.3
1,801,840	-		GFF1772	0.42	-0.4
1,801,840	-		GFF1772	0.42	-2.1
1,801,840	-		GFF1772	0.42	-0.1
1,801,840	-		GFF1772	0.42	-1.5
1,801,840	-		GFF1772	0.42	-1.0
1,801,849	-		GFF1772	0.45	+0.4
1,801,849	-		GFF1772	0.45	-1.2
1,801,849	-		GFF1772	0.45	-0.8
1,801,850	+		GFF1772	0.45	+0.4
1,801,883	+		GFF1772	0.56	-1.4
1,801,883	+		GFF1772	0.56	-2.3
1,801,883	+		GFF1772	0.56	-2.0
1,801,891	-		GFF1772	0.58	-0.2
1,801,891	-		GFF1772	0.58	-0.9
1,801,891	-		GFF1772	0.58	-1.4
1,801,891	-		GFF1772	0.58	+0.2
1,801,891	-		GFF1772	0.58	+1.6
1,801,891	-		GFF1772	0.58	-1.6
1,801,891	-		GFF1772	0.58	-1.0
1,801,892	+		GFF1772	0.58	-0.9
1,801,926	+		GFF1772	0.69	+1.2
1,801,975	+		GFF1772	0.85	+1.3
1,801,983	-		GFF1772	0.87	-1.2
1,801,983	-		GFF1772	0.87	-0.2
1,801,983	-		GFF1772	0.87	-0.5
1,801,983	-		GFF1772	0.87	+0.1
1,801,999	-				-0.4
1,802,000	+				-0.7
1,802,000	+				-1.9
1,802,008	-				-0.8
1,802,008	-				-1.3
1,802,008	-				-0.4
1,802,010	-				+0.7
1,802,020	+				-0.3
1,802,030	+				-0.4
1,802,030	+				-2.2
1,802,038	-				-0.9
1,802,043	+				-1.7
1,802,043	-				-1.5
1,802,049	-				-1.0
1,802,057	+				-0.7
1,802,057	+				+0.6
1,802,062	+		GFF1773	0.11	-0.3
1,802,062	+		GFF1773	0.11	+0.1
1,802,065	-		GFF1773	0.11	-1.0
1,802,072	+		GFF1773	0.13	+0.8
1,802,074	+		GFF1773	0.13	-0.7
1,802,082	-		GFF1773	0.15	+1.0
1,802,082	-		GFF1773	0.15	+0.8
1,802,082	-		GFF1773	0.15	-1.7
1,802,082	-		GFF1773	0.15	-1.1
1,802,082	-		GFF1773	0.15	-1.0
1,802,138	+		GFF1773	0.29	+0.4
1,802,150	+		GFF1773	0.32	-1.1
1,802,157	+		GFF1773	0.34	-1.2
1,802,158	-		GFF1773	0.34	-1.6
1,802,159	+		GFF1773	0.34	-0.2
1,802,167	+		GFF1773	0.36	-0.8
1,802,172	+		GFF1773	0.38	+1.4
1,802,185	-		GFF1773	0.41	-1.1
1,802,185	-		GFF1773	0.41	-1.4
1,802,185	-		GFF1773	0.41	-0.9
1,802,185	-		GFF1773	0.41	-1.3
1,802,200	-		GFF1773	0.44	-0.2
1,802,204	-		GFF1773	0.45	+1.4
1,802,221	+		GFF1773	0.50	-0.6
1,802,239	-		GFF1773	0.54	-2.0
1,802,260	+		GFF1773	0.59	-0.7
1,802,260	+		GFF1773	0.59	-0.0
1,802,268	-		GFF1773	0.61	-0.0
1,802,268	-		GFF1773	0.61	-0.8
1,802,270	+		GFF1773	0.62	-0.6
1,802,283	+		GFF1773	0.65	-0.0
1,802,283	+		GFF1773	0.65	+0.4
1,802,284	+		GFF1773	0.65	+0.0
1,802,284	+		GFF1773	0.65	-0.4
1,802,304	-		GFF1773	0.70	-1.1
1,802,317	-		GFF1773	0.73	+0.2
1,802,328	+		GFF1773	0.76	-0.6
1,802,330	+		GFF1773	0.76	+0.6
1,802,330	+		GFF1773	0.76	-1.0
1,802,336	-		GFF1773	0.78	+0.8
1,802,338	-		GFF1773	0.78	+0.1
1,802,338	-		GFF1773	0.78	-1.9
1,802,365	-		GFF1773	0.85	-0.5
1,802,365	-		GFF1773	0.85	-0.4
1,802,451	-				-0.2
1,802,465	+				+0.2
1,802,473	-				-1.5
1,802,473	-				-0.3
1,802,473	-				+0.6
1,802,473	-				-2.9
1,802,477	+				-0.2
1,802,477	+				-0.2
1,802,477	+				-1.1
1,802,477	+				-1.0
1,802,477	+				+2.1
1,802,477	+				+1.1
1,802,477	+				+0.2
1,802,477	+				-1.0
1,802,477	+				-0.6
1,802,477	+				+0.2
1,802,485	-				-0.3
1,802,485	-				-1.1
1,802,485	-				-0.3
1,802,485	-				-0.1
1,802,485	-				-0.7
1,802,485	-				-0.0
1,802,485	-				-0.5
1,802,485	-				-0.9
1,802,485	-				-1.8
1,802,490	+				-0.4
1,802,501	-				-0.3
1,802,520	-		GFF1774	0.11	+0.7
1,802,547	-		GFF1774	0.20	-0.1
1,802,549	+		GFF1774	0.20	+0.2
1,802,566	-		GFF1774	0.25	-2.0
1,802,566	-		GFF1774	0.25	-0.5
1,802,569	-		GFF1774	0.26	+0.1
1,802,574	+		GFF1774	0.28	+0.1
1,802,579	+		GFF1774	0.29	+1.5
1,802,579	+		GFF1774	0.29	-0.6
1,802,584	+		GFF1774	0.31	+0.2
1,802,584	+		GFF1774	0.31	+0.2
1,802,584	+		GFF1774	0.31	+0.1
1,802,584	+		GFF1774	0.31	-1.3
1,802,584	+		GFF1774	0.31	-0.3
1,802,584	+		GFF1774	0.31	-0.5
1,802,584	+		GFF1774	0.31	-0.3
1,802,584	+		GFF1774	0.31	-1.0
1,802,584	+		GFF1774	0.31	-1.0
1,802,585	+		GFF1774	0.31	+0.8
1,802,585	+		GFF1774	0.31	+0.2
1,802,587	-		GFF1774	0.32	-1.5
1,802,587	-		GFF1774	0.32	-0.6
1,802,590	+		GFF1774	0.33	-1.7
1,802,592	-		GFF1774	0.33	-2.0
1,802,592	-		GFF1774	0.33	-1.0
1,802,592	-		GFF1774	0.33	-0.9
1,802,599	+		GFF1774	0.35	-1.1
1,802,613	-		GFF1774	0.40	+1.6
1,802,635	+		GFF1774	0.46	-0.8
1,802,643	-		GFF1774	0.49	-1.3
1,802,643	-		GFF1774	0.49	-0.3
1,802,666	+		GFF1774	0.56	-1.0
1,802,692	+		GFF1774	0.64	-0.6
1,802,692	+		GFF1774	0.64	-0.5
1,802,692	+		GFF1774	0.64	+0.4
1,802,692	+		GFF1774	0.64	+1.3
1,802,692	+		GFF1774	0.64	-0.7
1,802,692	+		GFF1774	0.64	+1.3
1,802,692	+		GFF1774	0.64	+0.0
1,802,692	+		GFF1774	0.64	-1.9
1,802,692	+		GFF1774	0.64	-1.5
1,802,692	+		GFF1774	0.64	-2.8
1,802,692	+		GFF1774	0.64	-1.3
1,802,692	+		GFF1774	0.64	+0.1
1,802,692	+		GFF1774	0.64	-0.3
1,802,692	+		GFF1774	0.64	+0.7
1,802,692	+		GFF1774	0.64	-0.5
1,802,692	+		GFF1774	0.64	-0.9
1,802,692	+		GFF1774	0.64	-2.0
1,802,692	+		GFF1774	0.64	-0.4
1,802,692	+		GFF1774	0.64	+0.2
1,802,692	+		GFF1774	0.64	+0.1
1,802,692	+		GFF1774	0.64	-1.4
1,802,692	+		GFF1774	0.64	-1.5
1,802,692	+		GFF1774	0.64	-1.5
1,802,692	+		GFF1774	0.64	-0.0
1,802,692	+		GFF1774	0.64	-2.3
1,802,692	+		GFF1774	0.64	-0.3
1,802,692	+		GFF1774	0.64	-0.2
1,802,692	+		GFF1774	0.64	-1.0
1,802,692	+		GFF1774	0.64	+0.3
1,802,700	-		GFF1774	0.66	+0.5
1,802,700	-		GFF1774	0.66	+0.1
1,802,700	-		GFF1774	0.66	-0.7
1,802,700	-		GFF1774	0.66	-1.9
1,802,700	-		GFF1774	0.66	+1.3
1,802,700	-		GFF1774	0.66	+0.6
1,802,700	-		GFF1774	0.66	-1.8
1,802,700	-		GFF1774	0.66	-0.9
1,802,700	-		GFF1774	0.66	+1.3
1,802,700	-		GFF1774	0.66	-1.0
1,802,700	-		GFF1774	0.66	+1.4
1,802,700	-		GFF1774	0.66	-1.3
1,802,700	-		GFF1774	0.66	-0.3
1,802,700	-		GFF1774	0.66	-1.0
1,802,700	-		GFF1774	0.66	+0.1
1,802,700	-		GFF1774	0.66	+0.0
1,802,700	-		GFF1774	0.66	-0.8
1,802,700	-		GFF1774	0.66	-0.7
1,802,700	-		GFF1774	0.66	-0.5
1,802,700	-		GFF1774	0.66	-0.3
1,802,700	-		GFF1774	0.66	-1.1
1,802,700	-		GFF1774	0.66	-0.9
1,802,700	-		GFF1774	0.66	+0.1
1,802,700	-		GFF1774	0.66	-0.1
1,802,700	-		GFF1774	0.66	-0.7
1,802,700	-		GFF1774	0.66	-1.9
1,802,700	-		GFF1774	0.66	+0.4
1,802,700	-		GFF1774	0.66	-0.4
1,802,700	-		GFF1774	0.66	-0.1
1,802,709	+		GFF1774	0.69	-1.4
1,802,726	-		GFF1774	0.74	-1.5
1,802,726	-		GFF1774	0.74	+1.1
1,802,823	+				-0.8
1,802,833	+				+1.1
1,802,896	-		GFF1775	0.21	-0.6
1,802,945	-		GFF1775	0.33	+1.0
1,802,950	-		GFF1775	0.34	-0.8
1,802,952	+		GFF1775	0.35	+1.1
1,802,962	-		GFF1775	0.37	-0.7
1,802,972	-		GFF1775	0.39	-1.0
1,802,990	-		GFF1775	0.44	-1.2
1,802,994	+		GFF1775	0.45	+1.4
1,803,007	+		GFF1775	0.48	-0.6
1,803,014	+		GFF1775	0.50	-2.0
1,803,024	-		GFF1775	0.52	-0.3
1,803,024	-		GFF1775	0.52	-1.3
1,803,035	+		GFF1775	0.55	+0.9
1,803,059	-		GFF1775	0.61	-0.1
1,803,071	+		GFF1775	0.64	+0.4
1,803,079	-		GFF1775	0.65	-1.5
1,803,082	+		GFF1775	0.66	-0.2
1,803,082	+		GFF1775	0.66	-0.7
1,803,082	+		GFF1775	0.66	-1.9
1,803,082	+		GFF1775	0.66	+0.5
1,803,085	-		GFF1775	0.67	-1.4
1,803,090	-		GFF1775	0.68	+1.2
1,803,121	-		GFF1775	0.76	-0.8
1,803,129	+		GFF1775	0.78	-0.2
1,803,129	+		GFF1775	0.78	-0.3
1,803,137	-		GFF1775	0.80	-1.4
1,803,137	-		GFF1775	0.80	-0.8
1,803,137	-		GFF1775	0.80	-1.0
1,803,160	-		GFF1775	0.85	-2.0
1,803,205	-				-1.0
1,803,205	-				-1.0
1,803,216	+				-1.4
1,803,216	+				-0.2
1,803,216	+				-1.1
1,803,216	+				-1.2
1,803,216	+				-0.7
1,803,216	+				-1.4
1,803,216	-				-2.4
1,803,221	+				-0.5
1,803,221	+				-0.6
1,803,221	+				-0.1
1,803,224	-				+0.2
1,803,229	-				-0.6
1,803,229	-				-0.9
1,803,234	-				-0.3
1,803,246	+		GFF1776	0.14	-0.2
1,803,254	-		GFF1776	0.18	-2.9
1,803,263	-		GFF1776	0.22	+0.1
1,803,277	-		GFF1776	0.29	-0.6
1,803,289	+		GFF1776	0.35	-1.5
1,803,305	+		GFF1776	0.43	-1.2
1,803,320	+		GFF1776	0.50	+0.8
1,803,328	+		GFF1776	0.54	+1.8
1,803,334	+		GFF1776	0.57	-0.3
1,803,336	-		GFF1776	0.57	+2.2
1,803,346	+		GFF1776	0.62	-0.9
1,803,346	+		GFF1776	0.62	+0.8
1,803,396	+		GFF1776	0.86	-2.0
1,803,404	-				-0.9
1,803,404	-				+1.2
1,803,404	-				-0.8
1,803,413	-				-1.2
1,803,416	+				+0.0
1,803,462	+				+0.3
1,803,462	+				-0.3
1,803,462	+				-0.7
1,803,470	-				-0.4
1,803,470	-				-0.0
1,803,470	-				-1.2
1,803,472	-				-0.4
1,803,484	-		GFF1777	0.12	-0.5
1,803,485	+		GFF1777	0.12	+0.5
1,803,485	+		GFF1777	0.12	-0.2
1,803,491	-		GFF1777	0.13	+0.7
1,803,553	+		GFF1777	0.25	-1.4
1,803,556	+		GFF1777	0.25	-0.5
1,803,556	+		GFF1777	0.25	+1.6
1,803,556	+		GFF1777	0.25	-0.3
1,803,564	-		GFF1777	0.27	-0.3
1,803,574	-		GFF1777	0.29	+1.0
1,803,580	+		GFF1777	0.30	-0.2
1,803,632	-		GFF1777	0.40	-1.0
1,803,661	-		GFF1777	0.45	-1.1
1,803,663	+		GFF1777	0.46	+1.4
1,803,663	+		GFF1777	0.46	+0.2
1,803,663	+		GFF1777	0.46	-1.5
1,803,666	-		GFF1777	0.46	+1.2
1,803,671	-		GFF1777	0.47	+0.3
1,803,671	-		GFF1777	0.47	-1.1
1,803,697	-		GFF1777	0.52	-1.2
1,803,710	+		GFF1777	0.54	-0.3
1,803,718	-		GFF1777	0.56	-1.0
1,803,740	+		GFF1777	0.60	-0.5
1,803,740	+		GFF1777	0.60	-0.7
1,803,740	+		GFF1777	0.60	-0.2
1,803,740	+		GFF1777	0.60	+0.2
1,803,748	-		GFF1777	0.61	-1.8
1,803,750	+		GFF1777	0.62	-0.7
1,803,754	-		GFF1777	0.63	-0.3
1,803,773	-		GFF1777	0.66	-1.7
1,803,794	+		GFF1777	0.70	-0.2
1,803,843	+		GFF1777	0.79	-0.2
1,803,852	+		GFF1777	0.81	+1.2
1,803,895	+		GFF1777	0.89	-0.0
1,803,895	+		GFF1777	0.89	-0.2
1,803,895	+		GFF1777	0.89	-0.4
1,803,895	+		GFF1777	0.89	+0.6
1,803,895	+		GFF1777	0.89	-1.0
1,803,903	-				-0.9
1,803,903	-				-0.4
1,803,903	-				-0.1
1,803,918	+				+0.6
1,803,923	+				-0.7
1,803,923	+				-0.5
1,803,931	-				-0.9
1,803,959	-				-1.0
1,804,002	+				-0.0
1,804,007	+				-1.0
1,804,009	+				+0.1
1,804,009	-				-1.2
1,804,010	-				-0.5
1,804,010	-				+1.2
1,804,013	+				-1.5
1,804,016	+				-1.0
1,804,026	-				-0.9
1,804,106	+				+1.1
1,804,106	+				+0.8
1,804,106	+				+1.0
1,804,106	-				-0.8
1,804,114	-				-1.7
1,804,119	-				-0.3
1,804,122	-				-1.9
1,804,127	-				-0.6
1,804,135	-				-0.3
1,804,135	-				-1.1
1,804,163	+				+0.7
1,804,171	-				-1.1
1,804,188	-		GFF1778	0.11	+0.6