Strain Fitness in Sphingobium sp. HT1-2 around GFF17

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
10,825	-				-0.8
10,832	-				-1.1
10,839	-				+0.0
10,844	+				-0.5
10,844	+				-0.9
10,844	+				-0.8
10,844	+				-0.8
10,844	+				+0.5
10,844	+				-0.8
10,852	-				-1.1
10,852	-				-0.8
10,852	-				-1.3
10,852	-				-0.5
10,852	-				-1.6
10,852	-				+0.3
10,854	+				-1.2
10,854	+				-0.9
10,859	+				-1.0
10,859	+				-0.4
10,867	-				+0.2
10,876	+				-0.6
10,889	-				+1.4
10,906	-				-2.4
10,921	-				+0.2
10,921	-				-0.3
10,922	+				-0.3
10,929	-				-0.4
10,930	-				-1.1
10,936	+				-1.4
10,947	+				-0.1
10,952	+				-0.1
10,966	-				-0.4
10,967	+				-1.2
11,035	+				-0.6
11,057	+		GFF15	0.13	-1.2
11,058	+		GFF15	0.13	-0.8
11,058	+		GFF15	0.13	-0.3
11,058	+		GFF15	0.13	-1.1
11,065	-		GFF15	0.14	-0.2
11,065	-		GFF15	0.14	+0.0
11,066	-		GFF15	0.14	+0.0
11,071	-		GFF15	0.15	+0.1
11,084	+		GFF15	0.18	-0.2
11,084	+		GFF15	0.18	-1.0
11,084	+		GFF15	0.18	-0.2
11,084	+		GFF15	0.18	+0.3
11,092	-		GFF15	0.19	-0.4
11,092	-		GFF15	0.19	-0.9
11,102	+		GFF15	0.21	-0.9
11,110	-		GFF15	0.23	-0.6
11,110	-		GFF15	0.23	-1.0
11,110	-		GFF15	0.23	+0.5
11,110	-		GFF15	0.23	-0.7
11,118	+		GFF15	0.25	-0.6
11,118	+		GFF15	0.25	+0.6
11,118	+		GFF15	0.25	+0.3
11,118	+		GFF15	0.25	+0.5
11,120	+		GFF15	0.25	-2.3
11,120	+		GFF15	0.25	+1.0
11,120	+		GFF15	0.25	+0.8
11,124	+		GFF15	0.26	-0.2
11,124	+		GFF15	0.26	-0.2
11,124	+		GFF15	0.26	+1.3
11,127	-		GFF15	0.26	-0.5
11,132	-		GFF15	0.27	-0.0
11,132	-		GFF15	0.27	+0.1
11,132	-		GFF15	0.27	+0.9
11,132	-		GFF15	0.27	+0.2
11,133	-		GFF15	0.27	-0.9
11,175	-		GFF15	0.36	+0.7
11,191	+		GFF15	0.39	-1.3
11,191	+		GFF15	0.39	-2.1
11,232	-		GFF15	0.47	-1.2
11,250	-		GFF15	0.50	-0.4
11,264	-		GFF15	0.53	+0.7
11,303	+		GFF15	0.61	+0.7
11,311	-		GFF15	0.62	+0.7
11,312	+		GFF15	0.63	+0.3
11,312	+		GFF15	0.63	-0.6
11,318	+		GFF15	0.64	-0.4
11,318	+		GFF15	0.64	+1.1
11,318	+		GFF15	0.64	-0.3
11,318	+		GFF15	0.64	-0.5
11,318	+		GFF15	0.64	-1.4
11,326	-		GFF15	0.65	-0.8
11,326	-		GFF15	0.65	-1.3
11,326	-		GFF15	0.65	-0.2
11,326	-		GFF15	0.65	-0.5
11,326	-		GFF15	0.65	+0.1
11,326	-		GFF15	0.65	+0.4
11,326	-		GFF15	0.65	-0.6
11,326	-		GFF15	0.65	-1.1
11,333	+		GFF15	0.67	-0.7
11,333	+		GFF15	0.67	-1.4
11,337	-		GFF15	0.67	+0.7
11,380	+		GFF15	0.76	+2.0
11,388	-		GFF15	0.77	-1.2
11,393	+		GFF15	0.78	+0.4
11,404	+		GFF15	0.81	-1.5
11,414	-		GFF15	0.83	+0.0
11,424	-		GFF15	0.85	-1.8
11,424	-		GFF15	0.85	-1.3
11,426	+		GFF15	0.85	+1.0
11,444	+		GFF15	0.88	-0.9
11,444	+		GFF15	0.88	+1.0
11,445	-		GFF15	0.89	-1.1
11,452	-				-0.6
11,452	-				+0.4
11,461	+				-1.7
11,467	+				-0.0
11,469	-				-0.7
11,472	+				+0.9
11,472	+				+1.5
11,472	+				+1.6
11,472	+				+1.6
11,472	+				+0.1
11,472	+				+1.1
11,472	+				+0.5
11,472	+				+0.7
11,472	+				-1.1
11,475	-				-1.8
11,480	-				-0.1
11,480	-				-0.5
11,480	-				+0.9
11,480	-				+0.7
11,480	-				-0.4
11,480	-				+0.3
11,480	-				-0.6
11,480	-				-0.6
11,518	-				+0.5
11,531	-				-0.5
11,561	+		GFF16	0.17	+0.0
11,562	+		GFF16	0.18	+0.3
11,562	-		GFF16	0.18	-0.2
11,582	+		GFF16	0.24	-1.6
11,592	+		GFF16	0.27	-0.1
11,600	-		GFF16	0.29	-0.5
11,600	-		GFF16	0.29	-0.6
11,614	+		GFF16	0.34	-1.9
11,614	+		GFF16	0.34	-1.6
11,622	-		GFF16	0.36	+0.9
11,626	+		GFF16	0.37	+0.1
11,626	+		GFF16	0.37	-2.0
11,626	+		GFF16	0.37	-1.3
11,626	+		GFF16	0.37	-0.5
11,627	-		GFF16	0.38	-0.1
11,631	+		GFF16	0.39	-1.0
11,634	-		GFF16	0.40	-0.6
11,634	-		GFF16	0.40	-0.9
11,634	-		GFF16	0.40	+0.0
11,641	+		GFF16	0.42	-0.3
11,650	-		GFF16	0.45	-1.3
11,654	-		GFF16	0.46	-0.4
11,669	-		GFF16	0.51	-0.9
11,669	-		GFF16	0.51	-0.5
11,692	+		GFF16	0.58	-1.3
11,710	-		GFF16	0.63	-1.8
11,715	-		GFF16	0.65	-1.5
11,721	+		GFF16	0.67	-2.0
11,758	-		GFF16	0.78	-1.5
11,758	-		GFF16	0.78	+1.4
11,758	-		GFF16	0.78	-0.7
11,784	-		GFF16	0.86	+0.3
11,793	+		GFF16	0.89	-1.2
11,808	+				-1.0
11,823	+				+1.1
11,829	+				-1.4
11,850	+				-0.5
11,861	+				-0.9
11,869	-				+1.4
11,931	-		GFF17	0.24	-0.5
11,936	+		GFF17	0.25	-1.2
11,961	-		GFF17	0.30	-1.2
11,974	-		GFF17	0.33	+0.1
12,068	-		GFF17	0.54	+0.1
12,092	+		GFF17	0.59	-2.3
12,105	+		GFF17	0.62	+0.1
12,178	-		GFF17	0.78	-1.5
12,178	-		GFF17	0.78	+0.7
12,203	-		GFF17	0.84	+0.8
12,219	+		GFF17	0.88	-0.7
12,227	-		GFF17	0.89	-0.4
12,229	+		GFF17	0.90	-0.2
12,229	+		GFF17	0.90	+0.6
12,230	+				-0.6
12,238	+				-1.2
12,238	+				+0.8
12,239	+				-1.8
12,246	-				-0.3
12,247	-				-1.5
12,251	+				-0.1
12,259	-				+1.5
12,264	-				+1.4
12,266	+				-1.3
12,266	+				+0.8
12,266	+				-0.6
12,288	+				-1.0
12,297	-				+0.0
12,301	+				+0.0
12,309	-				-1.6
12,309	-				-0.5
12,321	+		GFF18	0.13	+0.7
12,329	-		GFF18	0.15	-1.3
12,329	-		GFF18	0.15	-0.4
12,332	+		GFF18	0.16	-0.6
12,340	+		GFF18	0.18	-0.1
12,345	+		GFF18	0.20	-1.7
12,348	-		GFF18	0.21	-0.2
12,358	-		GFF18	0.23	-0.3
12,378	+		GFF18	0.29	-0.7
12,378	+		GFF18	0.29	+0.1
12,378	+		GFF18	0.29	-0.8
12,378	+		GFF18	0.29	+0.5
12,383	+		GFF18	0.30	-0.3
12,386	-		GFF18	0.31	-0.3
12,386	-		GFF18	0.31	-0.9
12,386	-		GFF18	0.31	-1.6
12,386	-		GFF18	0.31	+0.0
12,391	-		GFF18	0.33	-0.3
12,391	-		GFF18	0.33	-1.4
12,394	+		GFF18	0.33	-0.7
12,395	+		GFF18	0.34	+0.0
12,395	+		GFF18	0.34	-0.5
12,395	+		GFF18	0.34	-0.4
12,395	+		GFF18	0.34	-0.1
12,398	-		GFF18	0.34	+0.2
12,403	-		GFF18	0.36	-0.2
12,403	-		GFF18	0.36	-1.1
12,403	-		GFF18	0.36	-1.0
12,408	-		GFF18	0.37	-2.3
12,418	+		GFF18	0.40	-0.0
12,426	-		GFF18	0.42	-0.5
12,426	-		GFF18	0.42	-0.3
12,426	-		GFF18	0.42	-0.3
12,426	-		GFF18	0.42	-0.8
12,432	-		GFF18	0.44	+0.9
12,443	-		GFF18	0.47	+1.1
12,444	-		GFF18	0.47	-0.2
12,543	-		GFF18	0.75	-1.3
12,545	+		GFF18	0.75	+1.1
12,567	-		GFF18	0.81	+0.5
12,581	+		GFF18	0.85	-1.4
12,581	+		GFF18	0.85	-2.0
12,581	+		GFF18	0.85	-1.5
12,581	+		GFF18	0.85	+0.9
12,591	+		GFF18	0.88	-1.0
12,591	+		GFF18	0.88	-0.9
12,591	+		GFF18	0.88	+0.1
12,591	+		GFF18	0.88	-1.5
12,591	+		GFF18	0.88	+0.5
12,591	+		GFF18	0.88	-0.2
12,591	+		GFF18	0.88	-0.0
12,591	+		GFF18	0.88	-0.7
12,591	+		GFF18	0.88	-0.5
12,591	+		GFF18	0.88	-1.0
12,591	+		GFF18	0.88	+0.2
12,591	+		GFF18	0.88	+0.3
12,591	+		GFF18	0.88	+0.7
12,591	+		GFF18	0.88	+0.9
12,591	+		GFF18	0.88	+0.6
12,591	+		GFF18	0.88	+0.0
12,591	+		GFF18	0.88	-0.9
12,591	+		GFF18	0.88	-0.2
12,599	-				+1.4
12,599	-				+1.2
12,599	-				-0.4
12,599	-				+0.6
12,599	-				+0.5
12,599	-				+1.1
12,599	-				-0.2
12,599	-				-0.8
12,599	-				-0.1
12,599	-				-0.4
12,599	-				-0.5
12,599	-				+0.2
12,599	-				-0.8
12,599	-				-0.9
12,599	-				-0.2
12,599	-				-0.6
12,609	-				+0.7
12,626	+				-0.1
12,634	+				-0.4
12,647	-				-1.1
12,647	-				-1.5
12,742	-				-0.2
12,742	-				-0.3
12,742	-				-0.3
12,742	-				+0.8
12,795	-		GFF19	0.18	+1.5
12,797	-		GFF19	0.19	-1.2
12,825	-		GFF19	0.25	-0.4
12,825	-		GFF19	0.25	-0.0
12,899	+		GFF19	0.43	-0.3
12,903	+		GFF19	0.44	-0.4
12,907	-		GFF19	0.45	-1.4
12,907	-		GFF19	0.45	-1.6
12,907	-		GFF19	0.45	-1.5
12,912	-		GFF19	0.46	-0.2
12,921	+		GFF19	0.48	-1.1
12,929	-		GFF19	0.50	-0.9
12,936	+		GFF19	0.52	-0.5
12,973	-		GFF19	0.61	+1.1
12,978	-		GFF19	0.62	-0.5
13,001	+		GFF19	0.68	-1.0
13,016	+		GFF19	0.71	+0.4
13,016	+		GFF19	0.71	-1.1
13,016	+		GFF19	0.71	-2.0
13,016	+		GFF19	0.71	-1.3
13,024	-		GFF19	0.73	+0.0
13,024	-		GFF19	0.73	+0.2
13,024	-		GFF19	0.73	-2.3
13,024	-		GFF19	0.73	-1.6
13,024	-		GFF19	0.73	-0.6
13,042	-		GFF19	0.77	-2.1
13,062	+		GFF19	0.82	-0.2
13,062	+		GFF19	0.82	-1.8
13,062	+		GFF19	0.82	-0.4
13,070	-		GFF19	0.84	-0.5
13,070	-		GFF19	0.84	+0.4
13,070	-		GFF19	0.84	+0.1
13,070	-		GFF19	0.84	-0.8
13,073	+		GFF19	0.85	-1.3
13,073	+		GFF19	0.85	-2.1
13,081	-		GFF19	0.87	-0.2
13,085	-		GFF19	0.88	-0.2
13,092	+		GFF19	0.89	+0.9
13,100	+				-0.4
13,100	-				+0.6
13,100	-				-1.8
13,100	-				+1.3
13,100	-				+1.8
13,102	+				-0.3
13,108	-				+1.0
13,120	+				+0.1
13,125	+				-1.6
13,128	-				-0.9
13,128	-				+1.4
13,136	+				-0.3
13,189	+		GFF20	0.13	-0.5
13,189	-		GFF20	0.13	+0.7
13,205	+		GFF20	0.17	+1.1
13,211	+		GFF20	0.19	-1.4
13,214	-		GFF20	0.19	+1.6
13,216	+		GFF20	0.20	-1.4
13,216	+		GFF20	0.20	-0.5
13,216	+		GFF20	0.20	+0.6
13,216	+		GFF20	0.20	-0.9
13,216	+		GFF20	0.20	-0.7
13,224	-		GFF20	0.22	-0.2
13,235	+		GFF20	0.25	-1.1
13,237	-		GFF20	0.25	+0.5
13,237	-		GFF20	0.25	+1.4
13,255	-		GFF20	0.29	-1.7
13,255	-		GFF20	0.29	-1.7
13,257	+		GFF20	0.30	-0.9
13,257	+		GFF20	0.30	-1.1
13,257	+		GFF20	0.30	+1.4
13,257	+		GFF20	0.30	-0.3
13,260	-		GFF20	0.31	-0.6
13,265	-		GFF20	0.32	+0.4