Strain Fitness in Sphingobium sp. HT1-2 around GFF1631

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,658,799	+				-0.7
1,658,872	-				-0.5
1,658,896	+				+0.2
1,658,896	+				-1.0
1,658,896	+				-0.5
1,658,904	+				+0.0
1,658,904	+				-0.6
1,658,904	-				-1.2
1,658,904	-				-1.2
1,658,912	-				+1.0
1,658,914	+				-0.7
1,658,919	+				-0.5
1,658,922	-				-1.4
1,658,922	-				-0.2
1,658,923	-				+0.6
1,658,927	-		GFF1630	0.10	-0.4
1,658,958	-		GFF1630	0.17	+0.1
1,658,978	-		GFF1630	0.22	-1.0
1,658,985	+		GFF1630	0.23	-1.0
1,658,985	+		GFF1630	0.23	-1.0
1,658,989	-		GFF1630	0.24	-0.3
1,659,016	+		GFF1630	0.30	-0.4
1,659,024	-		GFF1630	0.32	-0.0
1,659,036	+		GFF1630	0.35	-1.1
1,659,047	+		GFF1630	0.37	+1.4
1,659,053	+		GFF1630	0.39	-0.3
1,659,053	+		GFF1630	0.39	-0.7
1,659,053	+		GFF1630	0.39	-1.5
1,659,053	+		GFF1630	0.39	-1.2
1,659,061	-		GFF1630	0.41	-2.0
1,659,072	+		GFF1630	0.43	+0.5
1,659,111	-		GFF1630	0.52	-0.9
1,659,116	+		GFF1630	0.53	+0.5
1,659,118	+		GFF1630	0.54	+0.0
1,659,124	-		GFF1630	0.55	+1.4
1,659,126	-		GFF1630	0.55	-1.5
1,659,126	-		GFF1630	0.55	+0.4
1,659,171	+		GFF1630	0.66	-0.2
1,659,176	+		GFF1630	0.67	-0.1
1,659,188	+		GFF1630	0.69	-1.2
1,659,189	-		GFF1630	0.70	-1.1
1,659,218	+		GFF1630	0.76	-1.5
1,659,272	-		GFF1630	0.88	-1.6
1,659,274	+		GFF1630	0.89	+0.2
1,659,299	+				-1.9
1,659,305	-				+0.6
1,659,312	-				-1.2
1,659,376	+				-1.0
1,659,379	-				+0.0
1,659,384	-				-0.7
1,659,384	-				-2.1
1,659,393	+				-0.2
1,659,393	+				+0.6
1,659,398	-		GFF1631	0.10	-0.4
1,659,415	-		GFF1631	0.13	-0.2
1,659,420	+		GFF1631	0.13	-1.2
1,659,429	+		GFF1631	0.15	-0.6
1,659,437	-		GFF1631	0.16	+0.6
1,659,437	-		GFF1631	0.16	-0.1
1,659,437	-		GFF1631	0.16	-1.2
1,659,446	+		GFF1631	0.17	-0.6
1,659,512	-		GFF1631	0.26	+0.2
1,659,520	+		GFF1631	0.27	+0.3
1,659,528	-		GFF1631	0.28	+0.0
1,659,539	+		GFF1631	0.29	-1.7
1,659,547	-		GFF1631	0.30	+0.4
1,659,573	+		GFF1631	0.34	+0.4
1,659,581	-		GFF1631	0.35	-0.9
1,659,583	+		GFF1631	0.35	-1.2
1,659,594	-		GFF1631	0.36	+0.7
1,659,631	-		GFF1631	0.41	-1.8
1,659,637	+		GFF1631	0.42	-0.3
1,659,645	-		GFF1631	0.43	-1.0
1,659,679	-		GFF1631	0.48	-0.3
1,659,692	+		GFF1631	0.49	-1.0
1,659,692	+		GFF1631	0.49	-1.9
1,659,692	+		GFF1631	0.49	+0.6
1,659,692	+		GFF1631	0.49	+0.4
1,659,692	+		GFF1631	0.49	-0.6
1,659,692	+		GFF1631	0.49	-1.0
1,659,700	-		GFF1631	0.50	-0.7
1,659,700	-		GFF1631	0.50	+0.1
1,659,700	-		GFF1631	0.50	-1.5
1,659,700	-		GFF1631	0.50	-0.4
1,659,700	-		GFF1631	0.50	-0.5
1,659,700	-		GFF1631	0.50	-1.7
1,659,700	-		GFF1631	0.50	-0.9
1,659,707	+		GFF1631	0.51	-1.0
1,659,719	+		GFF1631	0.53	-1.3
1,659,725	-		GFF1631	0.54	-0.5
1,659,730	+		GFF1631	0.54	-0.6
1,659,730	+		GFF1631	0.54	-1.6
1,659,730	+		GFF1631	0.54	-2.5
1,659,742	+		GFF1631	0.56	-1.0
1,659,767	+		GFF1631	0.59	-0.1
1,659,770	-		GFF1631	0.60	-1.8
1,659,786	+		GFF1631	0.62	+0.3
1,659,786	-		GFF1631	0.62	+0.3
1,659,818	+		GFF1631	0.66	+0.0
1,659,826	-		GFF1631	0.67	+0.5
1,659,828	+		GFF1631	0.67	-2.9
1,659,829	+		GFF1631	0.67	-1.6
1,659,829	+		GFF1631	0.67	-0.7
1,659,829	+		GFF1631	0.67	+0.1
1,659,829	+		GFF1631	0.67	+1.1
1,659,837	-		GFF1631	0.69	+0.6
1,659,872	+		GFF1631	0.73	+1.6
1,659,874	-		GFF1631	0.73	-0.4
1,659,890	-		GFF1631	0.76	-1.1
1,659,892	-		GFF1631	0.76	+0.3
1,659,926	+		GFF1631	0.80	+1.7
1,659,944	-		GFF1631	0.83	-1.2
1,659,950	-		GFF1631	0.83	-1.0
1,659,951	+		GFF1631	0.84	-1.0
1,659,982	+		GFF1631	0.88	+1.2
1,659,992	+		GFF1631	0.89	-2.0
1,660,000	-				+0.7
1,660,005	-				-1.4
1,660,041	+				-0.9
1,660,041	+				+0.7
1,660,044	+				-0.6
1,660,052	-				+1.4
1,660,090	+				-0.4
1,660,099	-				-1.5
1,660,113	-				-0.3
1,660,120	-				+0.8
1,660,134	+				-0.5
1,660,134	+				-0.6
1,660,139	+				+0.8
1,660,139	+				-0.2
1,660,142	-				-0.2
1,660,142	-				-0.2
1,660,142	-				-0.6
1,660,147	-				-0.6
1,660,147	-				+0.3
1,660,147	-				-0.2
1,660,152	-				-1.0
1,660,164	+				-0.2
1,660,169	-				-0.7
1,660,169	-				-0.0
1,660,192	+				+2.1
1,660,285	+		GFF1632	0.16	-1.3
1,660,285	+		GFF1632	0.16	-0.5
1,660,285	+		GFF1632	0.16	-0.2
1,660,293	-		GFF1632	0.17	-0.2
1,660,331	+		GFF1632	0.19	+0.1
1,660,338	+		GFF1632	0.20	-1.0
1,660,341	-		GFF1632	0.20	-0.3
1,660,360	-		GFF1632	0.22	+2.1
1,660,406	+		GFF1632	0.25	+0.7
1,660,417	+		GFF1632	0.26	-0.9
1,660,417	+		GFF1632	0.26	+0.0
1,660,417	+		GFF1632	0.26	+1.7
1,660,417	+		GFF1632	0.26	+0.5
1,660,425	-		GFF1632	0.27	+0.2
1,660,425	-		GFF1632	0.27	+0.1
1,660,446	+		GFF1632	0.28	-0.6
1,660,454	-		GFF1632	0.29	+0.8
1,660,469	+		GFF1632	0.30	-0.5
1,660,469	+		GFF1632	0.30	-1.2
1,660,469	+		GFF1632	0.30	+0.7
1,660,469	+		GFF1632	0.30	-1.0
1,660,477	-		GFF1632	0.30	+0.5
1,660,477	-		GFF1632	0.30	-1.0
1,660,477	-		GFF1632	0.30	-0.3
1,660,477	-		GFF1632	0.30	-1.7
1,660,477	-		GFF1632	0.30	+0.3
1,660,477	-		GFF1632	0.30	+0.4
1,660,479	+		GFF1632	0.31	+0.1
1,660,479	+		GFF1632	0.31	+0.7
1,660,479	+		GFF1632	0.31	+0.5
1,660,479	+		GFF1632	0.31	-1.2
1,660,479	+		GFF1632	0.31	-1.2
1,660,479	+		GFF1632	0.31	-2.0
1,660,479	+		GFF1632	0.31	+1.0
1,660,479	+		GFF1632	0.31	-0.9
1,660,479	+		GFF1632	0.31	+0.6
1,660,479	+		GFF1632	0.31	+0.0
1,660,479	+		GFF1632	0.31	+0.8
1,660,482	-		GFF1632	0.31	+0.1
1,660,482	-		GFF1632	0.31	-0.5
1,660,487	-		GFF1632	0.31	-1.0
1,660,487	-		GFF1632	0.31	+0.5
1,660,487	-		GFF1632	0.31	-1.4
1,660,487	-		GFF1632	0.31	-1.4
1,660,487	-		GFF1632	0.31	-1.4
1,660,487	-		GFF1632	0.31	+1.3
1,660,487	-		GFF1632	0.31	+0.8
1,660,487	-		GFF1632	0.31	-0.3
1,660,487	-		GFF1632	0.31	-0.4
1,660,487	-		GFF1632	0.31	-0.2
1,660,487	-		GFF1632	0.31	+0.9
1,660,487	-		GFF1632	0.31	+0.6
1,660,492	-		GFF1632	0.32	-0.3
1,660,498	+		GFF1632	0.32	+0.7
1,660,502	-		GFF1632	0.32	-1.8
1,660,505	+		GFF1632	0.33	-0.7
1,660,505	+		GFF1632	0.33	-0.8
1,660,513	-		GFF1632	0.33	-1.0
1,660,523	-		GFF1632	0.34	-1.5
1,660,526	-		GFF1632	0.34	+0.0
1,660,544	+		GFF1632	0.35	-1.8
1,660,576	-		GFF1632	0.38	+1.8
1,660,576	-		GFF1632	0.38	-0.8
1,660,593	+		GFF1632	0.39	+0.0
1,660,593	+		GFF1632	0.39	+0.5
1,660,594	-		GFF1632	0.39	+1.7
1,660,601	-		GFF1632	0.40	-0.7
1,660,602	-		GFF1632	0.40	-0.2
1,660,606	-		GFF1632	0.40	-0.0
1,660,625	+		GFF1632	0.41	-0.3
1,660,651	+		GFF1632	0.43	-1.4
1,660,664	+		GFF1632	0.44	-0.3
1,660,672	-		GFF1632	0.45	+0.5
1,660,677	+		GFF1632	0.45	+0.5
1,660,737	+		GFF1632	0.50	+1.1
1,660,739	-		GFF1632	0.50	+0.8
1,660,739	-		GFF1632	0.50	-1.4
1,660,745	-		GFF1632	0.50	-1.0
1,660,747	+		GFF1632	0.51	+0.3
1,660,755	-		GFF1632	0.51	-0.3
1,660,778	+		GFF1632	0.53	-1.5
1,660,778	+		GFF1632	0.53	-0.8
1,660,788	+		GFF1632	0.54	-0.9
1,660,789	+		GFF1632	0.54	-0.8
1,660,793	+		GFF1632	0.54	+0.4
1,660,793	+		GFF1632	0.54	-0.3
1,660,796	-		GFF1632	0.54	-0.2
1,660,797	-		GFF1632	0.54	-1.1
1,660,801	-		GFF1632	0.55	-0.6
1,660,801	-		GFF1632	0.55	+0.7
1,660,801	-		GFF1632	0.55	-1.0
1,660,801	-		GFF1632	0.55	-0.3
1,660,803	+		GFF1632	0.55	-1.2
1,660,820	-		GFF1632	0.56	-1.3
1,660,821	+		GFF1632	0.56	-1.6
1,660,821	+		GFF1632	0.56	+1.6
1,660,821	+		GFF1632	0.56	-0.7
1,660,826	+		GFF1632	0.57	+0.8
1,660,829	-		GFF1632	0.57	-0.6
1,660,836	+		GFF1632	0.57	-0.3
1,660,836	+		GFF1632	0.57	-0.7
1,660,836	+		GFF1632	0.57	-0.5
1,660,844	-		GFF1632	0.58	-0.5
1,660,844	-		GFF1632	0.58	-2.1
1,660,844	-		GFF1632	0.58	-0.6
1,660,844	-		GFF1632	0.58	+1.2
1,660,844	-		GFF1632	0.58	-0.7
1,660,844	-		GFF1632	0.58	+0.6
1,660,844	-		GFF1632	0.58	-0.4
1,660,844	-		GFF1632	0.58	+0.6
1,660,844	-		GFF1632	0.58	-0.2
1,660,844	-		GFF1632	0.58	-0.4
1,660,844	-		GFF1632	0.58	+0.1
1,660,844	-		GFF1632	0.58	-0.4
1,660,844	-		GFF1632	0.58	-0.6
1,660,844	-		GFF1632	0.58	-0.5
1,660,844	-		GFF1632	0.58	+0.7
1,660,854	-		GFF1632	0.59	-0.7
1,660,878	-		GFF1632	0.60	+0.3
1,660,898	+		GFF1632	0.62	+0.8
1,660,898	+		GFF1632	0.62	-1.7
1,660,906	-		GFF1632	0.63	-0.5
1,660,922	+		GFF1632	0.64	-0.2
1,660,967	+		GFF1632	0.67	+0.6
1,660,989	-		GFF1632	0.69	-0.3
1,660,995	+		GFF1632	0.69	-2.0
1,660,995	+		GFF1632	0.69	+0.3
1,660,995	+		GFF1632	0.69	-0.2
1,661,003	-		GFF1632	0.70	-0.4
1,661,003	-		GFF1632	0.70	-0.9
1,661,003	-		GFF1632	0.70	-1.2
1,661,009	+		GFF1632	0.70	+0.5
1,661,022	-		GFF1632	0.71	-0.1
1,661,032	-		GFF1632	0.72	-2.3
1,661,040	-		GFF1632	0.73	-0.5
1,661,049	-		GFF1632	0.73	-1.3
1,661,068	+		GFF1632	0.75	-0.8