Strain Fitness in Sphingobium sp. HT1-2 around GFF1567

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,593,874	+		GFF1565	0.64	-0.7
1,593,884	+		GFF1565	0.65	-1.0
1,593,884	+		GFF1565	0.65	+0.3
1,593,892	-		GFF1565	0.65	-1.3
1,593,994	+		GFF1565	0.73	-0.9
1,593,994	+		GFF1565	0.73	-0.1
1,593,996	-		GFF1565	0.73	-0.1
1,594,002	-		GFF1565	0.74	-1.1
1,594,026	+		GFF1565	0.75	-1.4
1,594,034	-		GFF1565	0.76	-1.7
1,594,045	+		GFF1565	0.77	-0.0
1,594,053	-		GFF1565	0.77	-0.7
1,594,053	-		GFF1565	0.77	-0.8
1,594,058	-		GFF1565	0.78	-0.4
1,594,087	+		GFF1565	0.80	-1.6
1,594,109	+		GFF1565	0.81	-0.2
1,594,109	+		GFF1565	0.81	-0.1
1,594,117	-		GFF1565	0.82	+0.8
1,594,117	-		GFF1565	0.82	-0.4
1,594,118	+		GFF1565	0.82	-1.0
1,594,118	+		GFF1565	0.82	-1.4
1,594,126	-		GFF1565	0.83	-0.3
1,594,126	-		GFF1565	0.83	-0.4
1,594,128	+		GFF1565	0.83	-1.6
1,594,128	+		GFF1565	0.83	+0.3
1,594,128	+		GFF1565	0.83	-0.2
1,594,128	+		GFF1565	0.83	-0.5
1,594,131	-		GFF1565	0.83	-0.3
1,594,141	+		GFF1565	0.84	+1.5
1,594,168	+		GFF1565	0.86	-1.4
1,594,184	-		GFF1565	0.87	-1.4
1,594,194	-		GFF1565	0.88	+0.4
1,594,207	+		GFF1565	0.88	-1.3
1,594,241	-				-0.4
1,594,254	+				-0.9
1,594,259	-				-0.3
1,594,259	-				+0.0
1,594,273	+				-0.5
1,594,273	+				-0.1
1,594,285	+				+0.3
1,594,290	+				-0.6
1,594,298	-				-0.1
1,594,298	-				-0.3
1,594,305	-				-1.9
1,594,310	-				-1.1
1,594,316	-				-0.2
1,594,348	+				-2.1
1,594,353	+				-1.4
1,594,429	-				-0.6
1,594,436	-				-0.7
1,594,475	+				+0.0
1,594,475	+				+0.7
1,594,475	+				+0.6
1,594,475	+				+0.3
1,594,483	-				-1.3
1,594,514	+		GFF1566	0.11	-0.7
1,594,524	+		GFF1566	0.14	+0.3
1,594,549	+		GFF1566	0.22	+0.6
1,594,597	+		GFF1566	0.37	+1.0
1,594,616	-		GFF1566	0.43	-0.7
1,594,619	+		GFF1566	0.44	-0.4
1,594,652	-		GFF1566	0.54	-0.2
1,594,681	-		GFF1566	0.63	-1.9
1,594,704	+		GFF1566	0.70	+0.4
1,594,704	-		GFF1566	0.70	-0.1
1,594,747	+		GFF1566	0.84	-1.1
1,594,755	+		GFF1566	0.86	-0.7
1,594,763	-		GFF1566	0.89	-1.2
1,594,763	-		GFF1566	0.89	+0.2
1,594,765	+		GFF1566	0.89	-0.9
1,594,765	+		GFF1566	0.89	-0.1
1,594,773	-				-0.5
1,594,773	-				+0.7
1,594,775	+				+0.3
1,594,805	-				+0.2
1,594,821	-				-1.2
1,594,885	+				-0.6
1,594,892	+				-0.2
1,594,893	-				-1.1
1,594,932	-				+1.5
1,594,932	-				+1.0
1,594,962	+		GFF1567	0.13	-0.3
1,594,963	+		GFF1567	0.13	-1.5
1,594,985	-		GFF1567	0.16	-1.4
1,594,996	+		GFF1567	0.17	-1.9
1,595,004	-		GFF1567	0.18	-1.3
1,595,017	+		GFF1567	0.20	-0.7
1,595,017	+		GFF1567	0.20	+1.4
1,595,017	+		GFF1567	0.20	-0.0
1,595,025	-		GFF1567	0.21	+1.3
1,595,025	-		GFF1567	0.21	+0.3
1,595,025	-		GFF1567	0.21	-0.3
1,595,027	+		GFF1567	0.21	-1.4
1,595,027	+		GFF1567	0.21	-1.4
1,595,027	+		GFF1567	0.21	-1.3
1,595,027	+		GFF1567	0.21	+0.5
1,595,027	+		GFF1567	0.21	+2.0
1,595,027	+		GFF1567	0.21	+0.7
1,595,027	+		GFF1567	0.21	-1.9
1,595,035	-		GFF1567	0.22	-1.6
1,595,035	-		GFF1567	0.22	-1.6
1,595,035	-		GFF1567	0.22	-0.5
1,595,035	-		GFF1567	0.22	+0.9
1,595,035	-		GFF1567	0.22	-1.4
1,595,035	-		GFF1567	0.22	-2.5
1,595,035	-		GFF1567	0.22	-1.1
1,595,035	-		GFF1567	0.22	-0.6
1,595,035	-		GFF1567	0.22	-0.1
1,595,055	+		GFF1567	0.25	-0.6
1,595,055	+		GFF1567	0.25	+1.1
1,595,073	-		GFF1567	0.27	-2.0
1,595,088	+		GFF1567	0.29	-0.6
1,595,092	-		GFF1567	0.30	-0.3
1,595,101	+		GFF1567	0.31	-0.6
1,595,119	+		GFF1567	0.33	+1.0
1,595,119	+		GFF1567	0.33	-0.3
1,595,120	+		GFF1567	0.33	+0.6
1,595,121	+		GFF1567	0.33	+0.6
1,595,127	-		GFF1567	0.34	-0.1
1,595,127	-		GFF1567	0.34	-0.2
1,595,127	-		GFF1567	0.34	+0.4
1,595,128	-		GFF1567	0.34	-1.3
1,595,129	+		GFF1567	0.35	-1.5
1,595,129	+		GFF1567	0.35	-1.1
1,595,136	+		GFF1567	0.35	-2.2
1,595,137	-		GFF1567	0.36	-1.2
1,595,137	-		GFF1567	0.36	+1.7
1,595,137	-		GFF1567	0.36	+1.4
1,595,137	-		GFF1567	0.36	-0.8
1,595,154	-		GFF1567	0.38	-0.9
1,595,154	-		GFF1567	0.38	+0.7
1,595,159	-		GFF1567	0.38	-1.1
1,595,164	-		GFF1567	0.39	-2.2
1,595,164	-		GFF1567	0.39	-2.2
1,595,169	-		GFF1567	0.40	-0.0
1,595,171	+		GFF1567	0.40	-1.5
1,595,171	+		GFF1567	0.40	-1.6
1,595,178	-		GFF1567	0.41	-0.5
1,595,179	-		GFF1567	0.41	-0.5
1,595,203	-		GFF1567	0.44	+1.1
1,595,203	-		GFF1567	0.44	-0.2
1,595,244	+		GFF1567	0.49	-0.8
1,595,246	+		GFF1567	0.50	-0.2
1,595,252	-		GFF1567	0.50	-0.5
1,595,310	+		GFF1567	0.58	-1.2
1,595,318	-		GFF1567	0.59	+0.3
1,595,351	+		GFF1567	0.63	-2.2
1,595,354	+		GFF1567	0.64	-1.6
1,595,354	+		GFF1567	0.64	-0.8
1,595,403	+		GFF1567	0.70	-0.5
1,595,427	-		GFF1567	0.73	-0.8
1,595,430	+		GFF1567	0.74	-0.7
1,595,458	+		GFF1567	0.77	-0.5
1,595,465	-		GFF1567	0.78	-0.1
1,595,470	+		GFF1567	0.79	+0.5
1,595,470	-		GFF1567	0.79	-0.4
1,595,488	-		GFF1567	0.81	-1.0
1,595,494	+		GFF1567	0.82	-0.7
1,595,527	-		GFF1567	0.86	-1.1
1,595,538	-		GFF1567	0.88	-0.5
1,595,556	+		GFF1567	0.90	-1.6
1,595,569	+				-0.3
1,595,569	+				-0.2
1,595,569	+				-0.2
1,595,575	+				-1.0
1,595,592	+				-0.3
1,595,592	+				-0.4
1,595,598	-				-0.3
1,595,618	+				-0.0
1,595,618	+				-0.3
1,595,618	+				-0.3
1,595,626	-				+0.5
1,595,626	-				+1.6
1,595,626	-				-0.2
1,595,626	-				+0.5
1,595,626	-				-0.5
1,595,626	-				-2.4
1,595,626	-				-0.6
1,595,671	+				-0.4
1,595,671	+				-1.1
1,595,671	+				-1.3
1,595,681	+				-0.5
1,595,681	+				-2.2
1,595,681	+				-0.5
1,595,681	+				+0.9
1,595,681	+				-0.6
1,595,681	+				+1.3
1,595,689	-				-1.4
1,595,689	-				-0.4
1,595,689	-				+0.1
1,595,701	-				-0.5
1,595,701	-				-0.5
1,595,745	-		GFF1568	0.12	-1.7
1,595,756	-		GFF1568	0.14	+0.8
1,595,776	-		GFF1568	0.16	-0.5
1,595,789	+		GFF1568	0.17	-0.2
1,595,838	-		GFF1568	0.22	+0.5
1,595,853	+		GFF1568	0.24	+0.7
1,595,880	+		GFF1568	0.27	+0.7
1,595,894	+		GFF1568	0.28	-1.4
1,595,907	+		GFF1568	0.30	+0.0
1,595,910	-		GFF1568	0.30	-0.9
1,595,910	-		GFF1568	0.30	-0.9
1,595,915	-		GFF1568	0.31	+0.2
1,595,915	-		GFF1568	0.31	-0.1
1,595,915	-		GFF1568	0.31	-1.4
1,595,940	-		GFF1568	0.33	-0.2
1,595,947	+		GFF1568	0.34	-0.2
1,595,977	+		GFF1568	0.37	+0.0
1,595,994	-		GFF1568	0.39	-0.8
1,596,006	-		GFF1568	0.40	-1.1
1,596,015	+		GFF1568	0.41	-1.1
1,596,023	-		GFF1568	0.42	-1.2
1,596,058	+		GFF1568	0.46	+0.3
1,596,066	-		GFF1568	0.47	+1.4
1,596,085	-		GFF1568	0.49	-0.5
1,596,095	-		GFF1568	0.50	-2.0
1,596,106	+		GFF1568	0.51	+0.4
1,596,106	+		GFF1568	0.51	-1.3
1,596,106	+		GFF1568	0.51	-2.1
1,596,106	+		GFF1568	0.51	+1.7
1,596,114	-		GFF1568	0.52	-1.2
1,596,114	-		GFF1568	0.52	+1.1
1,596,114	-		GFF1568	0.52	-0.4
1,596,114	-		GFF1568	0.52	-1.1
1,596,114	-		GFF1568	0.52	-1.3
1,596,114	-		GFF1568	0.52	-0.8
1,596,114	-		GFF1568	0.52	-0.3
1,596,114	-		GFF1568	0.52	-0.2
1,596,114	-		GFF1568	0.52	+0.2
1,596,114	-		GFF1568	0.52	-0.2
1,596,126	-		GFF1568	0.53	+0.8
1,596,207	-		GFF1568	0.62	+0.7
1,596,211	-		GFF1568	0.62	-0.4
1,596,242	+		GFF1568	0.66	+1.3
1,596,248	-		GFF1568	0.66	-1.5
1,596,250	+		GFF1568	0.66	+0.7
1,596,278	-		GFF1568	0.69	+1.3
1,596,292	+		GFF1568	0.71	-1.4
1,596,292	+		GFF1568	0.71	-0.5
1,596,297	+		GFF1568	0.71	+0.4
1,596,297	+		GFF1568	0.71	-0.4
1,596,297	+		GFF1568	0.71	+0.6
1,596,297	+		GFF1568	0.71	+0.4
1,596,297	+		GFF1568	0.71	-0.6
1,596,297	+		GFF1568	0.71	-0.7
1,596,297	+		GFF1568	0.71	+0.2
1,596,297	+		GFF1568	0.71	-0.2
1,596,297	+		GFF1568	0.71	-0.3
1,596,297	+		GFF1568	0.71	+1.1
1,596,297	+		GFF1568	0.71	-0.8
1,596,300	-		GFF1568	0.72	-0.4
1,596,305	-		GFF1568	0.72	-0.7
1,596,305	-		GFF1568	0.72	-0.7
1,596,305	-		GFF1568	0.72	-1.5
1,596,305	-		GFF1568	0.72	+0.7
1,596,305	-		GFF1568	0.72	+0.5
1,596,305	-		GFF1568	0.72	-0.2
1,596,305	-		GFF1568	0.72	+0.1
1,596,305	-		GFF1568	0.72	-1.1
1,596,322	+		GFF1568	0.74	-1.6
1,596,364	-		GFF1568	0.79	+0.3
1,596,364	-		GFF1568	0.79	+1.0
1,596,393	+		GFF1568	0.82	-1.1
1,596,393	-		GFF1568	0.82	+0.4
1,596,393	-		GFF1568	0.82	-1.8
1,596,447	+		GFF1568	0.88	-2.3
1,596,447	+		GFF1568	0.88	+0.6
1,596,447	+		GFF1568	0.88	-0.7
1,596,455	-		GFF1568	0.88	+0.2
1,596,455	-		GFF1568	0.88	+0.9
1,596,455	-		GFF1568	0.88	-1.4
1,596,455	-		GFF1568	0.88	+0.5
1,596,495	+				-0.5
1,596,495	+				+0.8
1,596,505	+				-0.4
1,596,513	-				-0.3
1,596,559	+				-0.7
1,596,561	+				-0.7
1,596,596	-				-1.8
1,596,602	-				+0.2
1,596,622	-				-0.3