Strain Fitness in Sphingobium sp. HT1-2 around GFF1528

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,558,052	-				+0.8
1,558,052	-				-2.0
1,558,052	-				+0.3
1,558,054	-				-0.3
1,558,057	-				+0.8
1,558,057	-				-0.1
1,558,063	-				-1.2
1,558,065	+				+1.4
1,558,065	+				+0.2
1,558,065	+				-0.2
1,558,066	-				+0.7
1,558,071	+				-0.3
1,558,071	+				+0.0
1,558,071	+				-0.5
1,558,071	+				-1.6
1,558,071	+				-1.1
1,558,071	+				-0.7
1,558,071	+				+0.5
1,558,071	+				+0.5
1,558,071	+				+1.2
1,558,071	+				+1.6
1,558,073	-				-0.7
1,558,079	-				+0.7
1,558,079	-				+0.1
1,558,079	-				-1.7
1,558,079	-				-0.9
1,558,079	-				-0.1
1,558,079	-				-1.1
1,558,079	-				-0.2
1,558,079	-				-1.0
1,558,088	+				+1.1
1,558,201	-				-1.0
1,558,202	+				-0.7
1,558,202	+				-0.5
1,558,202	+				-2.3
1,558,202	+				+1.0
1,558,207	+				-0.3
1,558,210	-				+0.4
1,558,210	-				+0.5
1,558,234	+				+0.1
1,558,244	+				+0.3
1,558,252	-				-0.3
1,558,257	+				-0.1
1,558,257	+				-1.3
1,558,260	+				+0.2
1,558,298	-				-0.2
1,558,298	-				-0.5
1,558,298	-				-1.1
1,558,298	-				-1.1
1,558,298	-				-0.7
1,558,298	-				-0.6
1,558,300	-				+0.9
1,558,303	+				+1.2
1,558,305	-				+1.1
1,558,308	+				+0.0
1,558,308	+				+2.3
1,558,308	+				+0.5
1,558,310	+				-0.5
1,558,316	-				-0.4
1,558,316	-				-0.0
1,558,316	-				-0.3
1,558,318	+				-0.2
1,558,318	+				-0.8
1,558,318	+				-1.1
1,558,321	+				-2.8
1,558,321	+				+1.8
1,558,326	+		GFF1527	0.10	+0.2
1,558,326	+		GFF1527	0.10	-1.0
1,558,326	-		GFF1527	0.10	-1.3
1,558,326	-		GFF1527	0.10	-1.4
1,558,326	-		GFF1527	0.10	+0.9
1,558,329	-		GFF1527	0.11	-0.3
1,558,331	+		GFF1527	0.11	+0.5
1,558,331	+		GFF1527	0.11	-0.1
1,558,334	-		GFF1527	0.11	-1.6
1,558,339	-		GFF1527	0.12	-0.7
1,558,360	+		GFF1527	0.15	+0.9
1,558,368	+		GFF1527	0.16	+0.1
1,558,368	+		GFF1527	0.16	+0.1
1,558,376	-		GFF1527	0.17	-0.3
1,558,376	-		GFF1527	0.17	-2.6
1,558,376	-		GFF1527	0.17	-1.1
1,558,450	-		GFF1527	0.26	-1.6
1,558,450	-		GFF1527	0.26	-0.4
1,558,471	+		GFF1527	0.29	-0.7
1,558,471	-		GFF1527	0.29	-1.9
1,558,477	+		GFF1527	0.29	-0.4
1,558,478	+		GFF1527	0.30	-0.8
1,558,480	-		GFF1527	0.30	+0.9
1,558,480	-		GFF1527	0.30	-0.1
1,558,500	+		GFF1527	0.32	+0.0
1,558,507	+		GFF1527	0.33	+1.4
1,558,507	+		GFF1527	0.33	-1.5
1,558,508	-		GFF1527	0.33	-1.2
1,558,508	-		GFF1527	0.33	-1.1
1,558,513	-		GFF1527	0.34	+0.2
1,558,525	-		GFF1527	0.35	+0.5
1,558,538	+		GFF1527	0.37	-1.0
1,558,540	+		GFF1527	0.37	+1.3
1,558,613	+		GFF1527	0.47	-1.1
1,558,631	+		GFF1527	0.49	-2.3
1,558,631	+		GFF1527	0.49	-1.3
1,558,631	+		GFF1527	0.49	-1.4
1,558,631	+		GFF1527	0.49	-0.9
1,558,634	-		GFF1527	0.49	-0.4
1,558,636	+		GFF1527	0.50	-0.2
1,558,636	+		GFF1527	0.50	-1.0
1,558,636	+		GFF1527	0.50	-0.1
1,558,636	+		GFF1527	0.50	-0.7
1,558,639	-		GFF1527	0.50	-0.5
1,558,639	-		GFF1527	0.50	+1.4
1,558,639	-		GFF1527	0.50	-0.9
1,558,639	-		GFF1527	0.50	-2.0
1,558,639	-		GFF1527	0.50	-1.6
1,558,639	-		GFF1527	0.50	-1.2
1,558,642	-		GFF1527	0.50	-0.2
1,558,644	-		GFF1527	0.51	-0.4
1,558,644	-		GFF1527	0.51	-0.7
1,558,644	-		GFF1527	0.51	-2.2
1,558,654	-		GFF1527	0.52	-1.6
1,558,654	-		GFF1527	0.52	-1.2
1,558,654	-		GFF1527	0.52	-1.0
1,558,666	+		GFF1527	0.53	-0.3
1,558,666	+		GFF1527	0.53	-1.1
1,558,674	-		GFF1527	0.54	+0.2
1,558,674	-		GFF1527	0.54	-0.8
1,558,685	+		GFF1527	0.56	-0.5
1,558,695	-		GFF1527	0.57	+0.8
1,558,722	-		GFF1527	0.61	+0.4
1,558,722	-		GFF1527	0.61	+0.1
1,558,738	+		GFF1527	0.63	-0.3
1,558,746	+		GFF1527	0.64	+0.3
1,558,755	-		GFF1527	0.65	-0.4
1,558,792	-		GFF1527	0.69	+0.2
1,558,792	-		GFF1527	0.69	+0.3
1,558,792	-		GFF1527	0.69	-0.1
1,558,797	-		GFF1527	0.70	-2.4
1,558,828	-		GFF1527	0.74	-0.1
1,558,852	-		GFF1527	0.77	-0.4
1,558,865	+		GFF1527	0.79	+1.3
1,558,886	+		GFF1527	0.81	-0.9
1,558,886	+		GFF1527	0.81	-0.3
1,558,894	-		GFF1527	0.82	-2.1
1,558,894	-		GFF1527	0.82	-1.7
1,558,894	-		GFF1527	0.82	-1.3
1,558,901	-		GFF1527	0.83	+0.4
1,558,916	-		GFF1527	0.85	+0.4
1,558,916	-		GFF1527	0.85	+1.0
1,558,942	+		GFF1527	0.89	-0.5
1,558,945	-		GFF1527	0.89	-0.9
1,558,945	-		GFF1527	0.89	+0.6
1,558,950	-		GFF1527	0.90	-1.6
1,558,984	-				+0.1
1,559,003	+				-1.3
1,559,003	+				-1.3
1,559,013	+				-0.2
1,559,013	+				-0.7
1,559,013	+				-0.8
1,559,013	+				-0.4
1,559,013	+				-1.1
1,559,013	+				-1.4
1,559,013	+				-1.4
1,559,016	-				+0.5
1,559,020	+				-1.4
1,559,021	-				-2.3
1,559,021	-				-1.4
1,559,021	-				+0.9
1,559,021	-				-1.2
1,559,021	-				+1.2
1,559,021	-				+0.5
1,559,021	-				-0.1
1,559,021	-				+0.7
1,559,021	-				-0.5
1,559,021	-				+0.3
1,559,027	-				+0.8
1,559,034	-				+0.6
1,559,034	-				-1.5
1,559,073	+				+0.6
1,559,089	+				-2.5
1,559,089	+				-0.9
1,559,089	+				+0.9
1,559,089	+				-1.3
1,559,091	+				-1.6
1,559,094	+				-0.8
1,559,094	+				-1.3
1,559,094	+				-0.4
1,559,094	+				-1.3
1,559,102	-				+0.9
1,559,102	-				-1.0
1,559,102	-				-1.2
1,559,102	-				+1.3
1,559,102	-				-0.1
1,559,115	-				-0.2
1,559,116	+				+0.3
1,559,126	+				-0.3
1,559,126	+				-0.4
1,559,126	+				-0.7
1,559,131	+				-1.7
1,559,149	+		GFF1528	0.12	-1.0
1,559,149	-		GFF1528	0.12	-0.8
1,559,150	-		GFF1528	0.12	+0.8
1,559,157	-		GFF1528	0.13	-0.3
1,559,157	-		GFF1528	0.13	-1.6
1,559,157	-		GFF1528	0.13	-1.5
1,559,174	+		GFF1528	0.15	-1.4
1,559,177	-		GFF1528	0.16	+0.3
1,559,182	-		GFF1528	0.16	+0.0
1,559,185	-		GFF1528	0.17	+0.1
1,559,202	+		GFF1528	0.19	-0.8
1,559,202	+		GFF1528	0.19	-1.3
1,559,202	+		GFF1528	0.19	-0.3
1,559,210	+		GFF1528	0.20	+1.1
1,559,210	-		GFF1528	0.20	+0.2
1,559,210	-		GFF1528	0.20	-0.6
1,559,210	-		GFF1528	0.20	+0.6
1,559,223	+		GFF1528	0.21	-1.6
1,559,231	-		GFF1528	0.22	+0.8
1,559,239	+		GFF1528	0.23	-0.6
1,559,247	-		GFF1528	0.24	-0.8
1,559,253	+		GFF1528	0.25	-1.4
1,559,253	+		GFF1528	0.25	-2.1
1,559,253	+		GFF1528	0.25	-0.2
1,559,256	-		GFF1528	0.25	-0.5
1,559,258	+		GFF1528	0.26	+0.3
1,559,258	+		GFF1528	0.26	-0.7
1,559,258	+		GFF1528	0.26	-1.3
1,559,258	+		GFF1528	0.26	+0.8
1,559,258	+		GFF1528	0.26	-1.6
1,559,258	+		GFF1528	0.26	+2.1
1,559,258	+		GFF1528	0.26	-1.3
1,559,258	+		GFF1528	0.26	-0.6
1,559,261	-		GFF1528	0.26	-1.6
1,559,261	-		GFF1528	0.26	-0.5
1,559,261	-		GFF1528	0.26	-1.1
1,559,261	-		GFF1528	0.26	-1.7
1,559,261	-		GFF1528	0.26	-2.3
1,559,266	-		GFF1528	0.27	+0.8
1,559,266	-		GFF1528	0.27	+0.3
1,559,266	-		GFF1528	0.27	-0.9
1,559,266	-		GFF1528	0.27	-0.8
1,559,266	-		GFF1528	0.27	-0.2
1,559,266	-		GFF1528	0.27	+0.5
1,559,266	-		GFF1528	0.27	-0.4
1,559,266	-		GFF1528	0.27	-0.7
1,559,266	-		GFF1528	0.27	-1.3
1,559,266	-		GFF1528	0.27	+0.7
1,559,266	-		GFF1528	0.27	+0.2
1,559,266	-		GFF1528	0.27	+0.2
1,559,271	-		GFF1528	0.27	-0.2
1,559,276	-		GFF1528	0.28	+1.1
1,559,282	-		GFF1528	0.29	+1.3
1,559,282	-		GFF1528	0.29	-0.3
1,559,302	+		GFF1528	0.31	-0.5
1,559,307	+		GFF1528	0.32	-0.9
1,559,310	-		GFF1528	0.32	+0.8
1,559,310	-		GFF1528	0.32	+0.8
1,559,320	-		GFF1528	0.33	+0.5
1,559,320	-		GFF1528	0.33	+0.2
1,559,320	-		GFF1528	0.33	-1.5
1,559,331	-		GFF1528	0.35	-0.5
1,559,336	-		GFF1528	0.35	-1.4
1,559,341	-		GFF1528	0.36	-0.5
1,559,355	-		GFF1528	0.38	-0.3
1,559,370	+		GFF1528	0.40	-1.5
1,559,406	+		GFF1528	0.44	-0.2
1,559,406	+		GFF1528	0.44	-0.8
1,559,406	+		GFF1528	0.44	-0.5
1,559,425	+		GFF1528	0.47	-1.9
1,559,425	+		GFF1528	0.47	-0.6
1,559,425	+		GFF1528	0.47	-0.1
1,559,425	+		GFF1528	0.47	-2.1
1,559,425	+		GFF1528	0.47	+0.5
1,559,425	+		GFF1528	0.47	+0.3
1,559,433	-		GFF1528	0.48	-0.6
1,559,433	-		GFF1528	0.48	-0.6
1,559,433	-		GFF1528	0.48	+1.0
1,559,433	-		GFF1528	0.48	+0.4
1,559,433	-		GFF1528	0.48	+0.9
1,559,433	-		GFF1528	0.48	-0.5
1,559,433	-		GFF1528	0.48	-0.3
1,559,433	-		GFF1528	0.48	-0.3
1,559,446	+		GFF1528	0.49	+0.0
1,559,454	+		GFF1528	0.50	-0.1
1,559,454	+		GFF1528	0.50	-0.9
1,559,454	+		GFF1528	0.50	+0.2
1,559,462	-		GFF1528	0.51	-0.1
1,559,462	-		GFF1528	0.51	+1.7
1,559,462	-		GFF1528	0.51	+0.8
1,559,467	-		GFF1528	0.52	-0.4
1,559,467	-		GFF1528	0.52	+0.1
1,559,467	-		GFF1528	0.52	-0.5
1,559,475	-		GFF1528	0.53	-1.4
1,559,494	+		GFF1528	0.55	-0.7
1,559,494	+		GFF1528	0.55	+0.8
1,559,494	-		GFF1528	0.55	+1.1
1,559,502	-		GFF1528	0.56	-0.5
1,559,515	-		GFF1528	0.58	-0.1
1,559,515	-		GFF1528	0.58	+0.2
1,559,518	+		GFF1528	0.58	-0.3
1,559,523	+		GFF1528	0.59	-1.3
1,559,526	-		GFF1528	0.59	-0.3
1,559,526	-		GFF1528	0.59	-1.3
1,559,526	-		GFF1528	0.59	-0.3
1,559,528	+		GFF1528	0.59	-1.3
1,559,528	+		GFF1528	0.59	-1.5
1,559,531	-		GFF1528	0.60	-0.2
1,559,536	-		GFF1528	0.60	-1.1
1,559,546	-		GFF1528	0.62	-0.2
1,559,622	-		GFF1528	0.71	-1.4
1,559,651	+		GFF1528	0.75	+0.6
1,559,703	+		GFF1528	0.81	+1.3
1,559,711	-		GFF1528	0.82	+0.0
1,559,711	-		GFF1528	0.82	-1.8
1,559,711	-		GFF1528	0.82	+0.6
1,559,711	-		GFF1528	0.82	+1.7
1,559,713	+		GFF1528	0.83	+0.6
1,559,745	-		GFF1528	0.87	-0.1
1,559,747	+		GFF1528	0.87	-0.6
1,559,756	+		GFF1528	0.88	-1.1
1,559,764	-		GFF1528	0.89	+0.9
1,559,775	-				+1.2
1,559,793	+				-0.1
1,559,796	-				+1.6
1,559,803	+				-0.7
1,559,803	+				+0.0
1,559,817	-				-1.2
1,559,823	+				-0.1
1,559,846	+				-0.3
1,559,846	+				+1.2
1,559,846	+				-1.9
1,559,846	+				-0.5
1,559,854	-				+1.5
1,559,854	-				-0.4
1,559,854	-				-1.7
1,559,854	-				-0.2
1,559,855	+				-0.4
1,559,863	-				-0.2
1,559,870	+				-1.7
1,559,878	-				-1.4
1,559,878	-				-1.1
1,559,880	-				-0.9
1,559,913	-				+0.3
1,559,932	+				+0.2
1,559,935	-		GFF1529	0.10	-1.2
1,559,940	-		GFF1529	0.11	-1.3
1,559,940	-		GFF1529	0.11	-1.2
1,559,957	+		GFF1529	0.13	-1.3
1,559,957	+		GFF1529	0.13	-1.1
1,560,011	+		GFF1529	0.20	-0.1
1,560,011	+		GFF1529	0.20	+1.8
1,560,011	+		GFF1529	0.20	+0.3
1,560,011	+		GFF1529	0.20	-0.6
1,560,019	-		GFF1529	0.21	+0.0
1,560,019	-		GFF1529	0.21	-0.7
1,560,059	+		GFF1529	0.27	-1.1
1,560,111	+		GFF1529	0.33	+0.7
1,560,111	+		GFF1529	0.33	-1.1
1,560,119	-		GFF1529	0.35	-1.2
1,560,119	-		GFF1529	0.35	+0.2
1,560,119	-		GFF1529	0.35	+0.7
1,560,120	+		GFF1529	0.35	+0.1
1,560,120	+		GFF1529	0.35	+0.8
1,560,121	+		GFF1529	0.35	-0.5
1,560,128	-		GFF1529	0.36	-0.7
1,560,128	-		GFF1529	0.36	+0.5
1,560,159	+		GFF1529	0.40	+0.3
1,560,159	+		GFF1529	0.40	-2.6
1,560,159	+		GFF1529	0.40	-1.5
1,560,167	-		GFF1529	0.41	-0.5
1,560,167	-		GFF1529	0.41	+0.3
1,560,167	-		GFF1529	0.41	-0.9
1,560,172	-		GFF1529	0.42	+0.5
1,560,181	+		GFF1529	0.43	-1.1
1,560,227	+		GFF1529	0.49	-0.6
1,560,229	-		GFF1529	0.49	-1.1
1,560,232	+		GFF1529	0.49	-0.5
1,560,240	-		GFF1529	0.51	-1.4
1,560,249	+		GFF1529	0.52	-1.4
1,560,257	-		GFF1529	0.53	-2.3
1,560,282	-		GFF1529	0.56	+0.8
1,560,297	+		GFF1529	0.58	-0.2
1,560,298	-		GFF1529	0.58	+0.5
1,560,306	-		GFF1529	0.59	-0.5
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