Strain Fitness in Sphingobium sp. HT1-2 around GFF1485

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,508,954	+		GFF1483	0.72	-0.6
1,508,954	+		GFF1483	0.72	-0.5
1,508,954	+		GFF1483	0.72	+1.0
1,508,954	+		GFF1483	0.72	-1.1
1,508,954	+		GFF1483	0.72	-1.4
1,508,954	+		GFF1483	0.72	-0.4
1,508,954	+		GFF1483	0.72	-0.2
1,508,954	+		GFF1483	0.72	-2.5
1,508,954	+		GFF1483	0.72	-0.6
1,508,954	+		GFF1483	0.72	+0.2
1,508,954	+		GFF1483	0.72	-1.4
1,508,954	+		GFF1483	0.72	-1.4
1,508,954	+		GFF1483	0.72	-0.1
1,508,960	-		GFF1483	0.73	-1.6
1,508,962	-		GFF1483	0.73	+0.0
1,508,962	-		GFF1483	0.73	-0.3
1,508,962	-		GFF1483	0.73	+0.5
1,508,962	-		GFF1483	0.73	+0.1
1,508,962	-		GFF1483	0.73	+0.1
1,508,962	-		GFF1483	0.73	-1.1
1,508,962	-		GFF1483	0.73	+2.1
1,508,962	-		GFF1483	0.73	-1.5
1,508,962	-		GFF1483	0.73	-0.7
1,508,962	-		GFF1483	0.73	-0.7
1,508,962	-		GFF1483	0.73	-1.0
1,508,962	-		GFF1483	0.73	-0.3
1,508,980	-		GFF1483	0.74	+0.0
1,509,000	+		GFF1483	0.76	+0.2
1,509,000	+		GFF1483	0.76	+0.2
1,509,000	+		GFF1483	0.76	+0.0
1,509,000	+		GFF1483	0.76	-2.4
1,509,000	+		GFF1483	0.76	-0.3
1,509,000	+		GFF1483	0.76	+1.2
1,509,000	+		GFF1483	0.76	-0.9
1,509,000	+		GFF1483	0.76	-1.1
1,509,000	+		GFF1483	0.76	-0.1
1,509,003	-		GFF1483	0.76	-0.5
1,509,008	-		GFF1483	0.77	+0.3
1,509,008	-		GFF1483	0.77	-1.2
1,509,008	-		GFF1483	0.77	-0.2
1,509,008	-		GFF1483	0.77	+0.4
1,509,008	-		GFF1483	0.77	-0.6
1,509,008	-		GFF1483	0.77	-0.4
1,509,012	+		GFF1483	0.77	+0.7
1,509,012	+		GFF1483	0.77	-2.0
1,509,018	+		GFF1483	0.78	-0.8
1,509,020	-		GFF1483	0.78	-1.0
1,509,025	+		GFF1483	0.78	-0.2
1,509,026	-		GFF1483	0.78	+1.4
1,509,032	+		GFF1483	0.79	+0.3
1,509,033	-		GFF1483	0.79	-0.7
1,509,046	+		GFF1483	0.80	-0.3
1,509,046	+		GFF1483	0.80	+0.7
1,509,054	-		GFF1483	0.81	-1.6
1,509,060	+		GFF1483	0.81	-0.3
1,509,065	+		GFF1483	0.81	+0.8
1,509,073	-		GFF1483	0.82	-1.4
1,509,099	-		GFF1483	0.84	-1.5
1,509,108	+		GFF1483	0.85	-0.3
1,509,115	+		GFF1483	0.86	-1.4
1,509,132	+		GFF1483	0.87	+1.3
1,509,147	+		GFF1483	0.88	+1.4
1,509,197	-				-0.3
1,509,205	+				-1.0
1,509,213	+				-0.2
1,509,213	+				-0.4
1,509,213	+				-2.8
1,509,213	+				-0.9
1,509,213	+				+0.4
1,509,213	+				-1.1
1,509,213	+				+1.7
1,509,213	+				+1.1
1,509,213	+				+0.2
1,509,213	+				-0.5
1,509,213	+				-0.4
1,509,213	+				+0.4
1,509,213	+				-0.4
1,509,213	+				+1.7
1,509,213	+				-0.3
1,509,218	+				-0.5
1,509,221	-				-0.9
1,509,221	-				-0.6
1,509,221	-				-1.6
1,509,221	-				-0.2
1,509,221	-				+0.8
1,509,221	-				-1.0
1,509,221	-				-0.5
1,509,221	-				-0.5
1,509,221	-				+1.1
1,509,221	-				-1.2
1,509,221	-				-0.2
1,509,221	-				-0.2
1,509,221	-				+0.8
1,509,223	+				-0.8
1,509,223	+				-0.8
1,509,226	-				-1.3
1,509,226	-				-0.4
1,509,231	-				+0.3
1,509,247	+				-0.3
1,509,272	+				-0.9
1,509,286	-				-1.0
1,509,305	+				+0.3
1,509,305	+				+0.3
1,509,305	+				-1.3
1,509,313	-				-0.5
1,509,313	-				-0.4
1,509,313	-				-1.0
1,509,315	+				-0.7
1,509,315	+				+1.4
1,509,315	+				+0.6
1,509,317	+				-0.4
1,509,322	+				-0.7
1,509,360	+				-0.9
1,509,372	+				-0.5
1,509,380	-		GFF1484	0.10	+0.3
1,509,385	+		GFF1484	0.11	+0.5
1,509,390	-		GFF1484	0.12	-1.0
1,509,410	+		GFF1484	0.16	-0.6
1,509,410	+		GFF1484	0.16	+0.1
1,509,411	-		GFF1484	0.16	+0.7
1,509,411	-		GFF1484	0.16	-0.2
1,509,411	-		GFF1484	0.16	-1.1
1,509,418	-		GFF1484	0.18	-1.7
1,509,418	-		GFF1484	0.18	-0.0
1,509,422	-		GFF1484	0.19	-0.7
1,509,462	-		GFF1484	0.27	+0.8
1,509,468	-		GFF1484	0.28	-0.9
1,509,476	-		GFF1484	0.30	-1.6
1,509,479	+		GFF1484	0.30	+0.3
1,509,483	+		GFF1484	0.31	-2.1
1,509,491	-		GFF1484	0.33	+1.8
1,509,491	-		GFF1484	0.33	-0.1
1,509,508	+		GFF1484	0.36	-0.4
1,509,508	+		GFF1484	0.36	-0.3
1,509,508	+		GFF1484	0.36	-1.9
1,509,524	+		GFF1484	0.40	-0.5
1,509,533	-		GFF1484	0.42	-1.4
1,509,540	+		GFF1484	0.43	-0.3
1,509,540	+		GFF1484	0.43	+0.1
1,509,540	+		GFF1484	0.43	-0.2
1,509,548	-		GFF1484	0.45	+0.8
1,509,548	-		GFF1484	0.45	-0.4
1,509,565	+		GFF1484	0.48	-0.7
1,509,565	+		GFF1484	0.48	-0.6
1,509,578	-		GFF1484	0.51	-1.9
1,509,580	+		GFF1484	0.51	-1.3
1,509,590	-		GFF1484	0.53	-1.1
1,509,598	-		GFF1484	0.55	+0.3
1,509,628	+		GFF1484	0.61	-1.0
1,509,635	-		GFF1484	0.63	-0.8
1,509,636	-		GFF1484	0.63	-0.2
1,509,638	+		GFF1484	0.63	+0.9
1,509,676	-		GFF1484	0.71	+0.5
1,509,693	+		GFF1484	0.74	+0.7
1,509,716	-		GFF1484	0.79	-0.6
1,509,724	+		GFF1484	0.81	+1.8
1,509,724	+		GFF1484	0.81	-1.0
1,509,729	+		GFF1484	0.82	+0.8
1,509,732	-		GFF1484	0.83	+0.4
1,509,732	-		GFF1484	0.83	+0.8
1,509,734	+		GFF1484	0.83	-1.4
1,509,734	+		GFF1484	0.83	-0.2
1,509,735	+		GFF1484	0.83	+0.7
1,509,742	-		GFF1484	0.85	-0.7
1,509,748	+		GFF1484	0.86	+1.9
1,509,750	+		GFF1484	0.86	-0.5
1,509,758	+		GFF1484	0.88	-1.5
1,509,758	+		GFF1484	0.88	-1.2
1,509,758	+		GFF1484	0.88	+0.6
1,509,763	+		GFF1484	0.89	-1.2
1,509,773	+				-1.2
1,509,781	-				-0.5
1,509,822	+				-0.8
1,509,822	+				+0.7
1,509,830	-				-0.7
1,509,843	+				+0.2
1,509,864	+				+0.2
1,509,872	-				-2.1
1,509,872	-				-0.4
1,509,908	-				-1.8
1,509,908	-				+0.6
1,509,908	-				-0.3
1,509,935	-				-0.6
1,509,939	-				-1.5
1,509,957	-				+0.2
1,509,996	+				-0.5
1,510,010	-				-1.9
1,510,027	+				-1.3
1,510,027	+				+0.0
1,510,027	+				-1.1
1,510,065	+		GFF1485	0.13	-1.5
1,510,096	-		GFF1485	0.17	-0.2
1,510,096	-		GFF1485	0.17	-2.3
1,510,101	+		GFF1485	0.17	+1.0
1,510,107	-		GFF1485	0.18	-0.6
1,510,126	+		GFF1485	0.20	-0.7
1,510,140	+		GFF1485	0.22	-0.7
1,510,163	+		GFF1485	0.25	+0.6
1,510,167	+		GFF1485	0.25	-0.2
1,510,175	-		GFF1485	0.26	+0.1
1,510,178	+		GFF1485	0.26	+0.1
1,510,178	+		GFF1485	0.26	-1.8
1,510,184	+		GFF1485	0.27	-0.4
1,510,185	+		GFF1485	0.27	-1.0
1,510,186	-		GFF1485	0.27	+0.1
1,510,186	-		GFF1485	0.27	-0.0
1,510,193	-		GFF1485	0.28	-0.1
1,510,203	+		GFF1485	0.29	-1.4
1,510,268	+		GFF1485	0.37	-0.7
1,510,276	-		GFF1485	0.38	+0.0
1,510,276	-		GFF1485	0.38	-0.5
1,510,287	+		GFF1485	0.39	-0.6
1,510,287	+		GFF1485	0.39	+0.9
1,510,293	-		GFF1485	0.40	-1.0
1,510,300	+		GFF1485	0.41	-1.1
1,510,304	-		GFF1485	0.41	-1.9
1,510,343	+		GFF1485	0.46	-0.1
1,510,366	-		GFF1485	0.48	-0.3
1,510,366	-		GFF1485	0.48	-0.2
1,510,371	+		GFF1485	0.49	-0.1
1,510,371	+		GFF1485	0.49	-1.3
1,510,371	+		GFF1485	0.49	-1.4
1,510,371	+		GFF1485	0.49	-1.4
1,510,371	+		GFF1485	0.49	+0.3
1,510,371	+		GFF1485	0.49	-2.0
1,510,371	+		GFF1485	0.49	-0.0
1,510,379	-		GFF1485	0.50	-1.0
1,510,379	-		GFF1485	0.50	+0.5
1,510,379	-		GFF1485	0.50	+0.4
1,510,379	-		GFF1485	0.50	-1.4
1,510,379	-		GFF1485	0.50	+0.5
1,510,379	-		GFF1485	0.50	+0.4
1,510,379	-		GFF1485	0.50	-1.0
1,510,432	-		GFF1485	0.56	-1.4
1,510,439	+		GFF1485	0.57	-0.0
1,510,439	+		GFF1485	0.57	-0.6
1,510,454	+		GFF1485	0.59	-0.1
1,510,455	+		GFF1485	0.59	-2.3
1,510,455	+		GFF1485	0.59	+1.0
1,510,456	+		GFF1485	0.59	-0.0
1,510,463	-		GFF1485	0.60	+0.1
1,510,464	-		GFF1485	0.60	-1.2
1,510,473	+		GFF1485	0.61	+0.0
1,510,473	+		GFF1485	0.61	-1.1
1,510,478	+		GFF1485	0.61	-0.1
1,510,504	-		GFF1485	0.64	-0.1
1,510,506	+		GFF1485	0.65	-1.0
1,510,514	-		GFF1485	0.66	+0.6
1,510,519	-		GFF1485	0.66	-0.9
1,510,559	-		GFF1485	0.71	-1.5
1,510,623	+		GFF1485	0.78	-1.7
1,510,631	-		GFF1485	0.79	-0.6
1,510,639	+		GFF1485	0.80	-0.2
1,510,669	-		GFF1485	0.84	-0.9
1,510,678	-		GFF1485	0.85	+0.2
1,510,692	+		GFF1485	0.86	-0.2
1,510,734	+				+0.6
1,510,737	-				-0.8
1,510,763	+				-0.6
1,510,766	-				-1.4
1,510,768	+				-0.0
1,510,771	-				-2.2
1,510,771	-				-0.8
1,510,771	-				-0.6
1,510,771	-				+0.0
1,510,771	-				+0.4
1,510,782	+				+0.5
1,510,794	-				-0.6
1,510,799	-				-2.0
1,510,801	+				-0.3
1,510,801	+				-0.1
1,510,801	+				+0.7
1,510,801	+				+0.9
1,510,801	+				-1.0
1,510,801	+				+0.2
1,510,801	+				-1.1
1,510,801	+				-1.2
1,510,801	+				-0.4
1,510,806	+				+0.2
1,510,809	-				+0.7
1,510,809	-				-1.5
1,510,809	-				-2.0
1,510,809	-				+1.8
1,510,809	-				+0.5
1,510,811	+				-1.9
1,510,811	+				+0.2
1,510,811	+				-0.2
1,510,811	+				-1.0
1,510,819	-				-0.3
1,510,819	-				-1.3
1,510,837	-				+0.1
1,510,846	+				-0.7
1,510,846	+				-0.2
1,510,854	-				-1.2
1,510,854	-				-1.7
1,510,856	+				-1.5
1,510,856	+				-0.5
1,510,864	-				-0.7
1,510,875	+				-0.4
1,510,880	+				-0.8
1,510,893	-				-1.3
1,510,930	-		GFF1486	0.15	-0.3
1,510,957	+		GFF1486	0.22	+0.4
1,510,957	+		GFF1486	0.22	-0.4
1,510,957	+		GFF1486	0.22	-1.0
1,510,965	-		GFF1486	0.24	-0.1
1,510,965	-		GFF1486	0.24	-0.3
1,510,990	+		GFF1486	0.30	-0.1
1,510,990	+		GFF1486	0.30	-1.3
1,510,990	+		GFF1486	0.30	+0.6
1,510,995	+		GFF1486	0.32	-1.3
1,510,998	-		GFF1486	0.33	-0.9
1,510,998	-		GFF1486	0.33	-1.5
1,511,007	+		GFF1486	0.35	+0.8
1,511,012	+		GFF1486	0.36	-1.4
1,511,018	-		GFF1486	0.38	-0.5
1,511,030	+		GFF1486	0.41	+0.3
1,511,062	+		GFF1486	0.49	-1.0
1,511,140	-		GFF1486	0.70	-0.7
1,511,221	+				-0.4
1,511,229	-				-0.1
1,511,229	-				-0.3
1,511,287	+				-1.4
1,511,306	+		GFF1487	0.13	+0.3
1,511,306	+		GFF1487	0.13	-0.0
1,511,306	+		GFF1487	0.13	-1.4
1,511,311	+		GFF1487	0.14	-1.2
1,511,314	-		GFF1487	0.14	-0.2
1,511,314	-		GFF1487	0.14	-0.8
1,511,314	-		GFF1487	0.14	-0.4
1,511,333	+		GFF1487	0.17	-2.2
1,511,341	-		GFF1487	0.19	-1.2
1,511,341	-		GFF1487	0.19	-0.8
1,511,355	+		GFF1487	0.21	-0.5
1,511,355	+		GFF1487	0.21	-1.0
1,511,363	-		GFF1487	0.23	-1.0
1,511,363	-		GFF1487	0.23	-1.0
1,511,363	-		GFF1487	0.23	+0.2
1,511,363	-		GFF1487	0.23	-1.0
1,511,363	-		GFF1487	0.23	+0.1
1,511,365	+		GFF1487	0.23	-1.5
1,511,371	-		GFF1487	0.24	-0.5
1,511,373	-		GFF1487	0.24	+0.5
1,511,399	+		GFF1487	0.29	-1.0
1,511,407	-		GFF1487	0.30	+0.2
1,511,407	-		GFF1487	0.30	+0.7
1,511,462	-		GFF1487	0.40	-1.1
1,511,494	+		GFF1487	0.45	-1.2
1,511,499	+		GFF1487	0.46	+1.0
1,511,580	+		GFF1487	0.60	-0.5
1,511,586	-		GFF1487	0.61	-0.1
1,511,588	-		GFF1487	0.62	-0.0
1,511,588	-		GFF1487	0.62	+0.6
1,511,591	+		GFF1487	0.62	-0.6
1,511,601	+		GFF1487	0.64	-0.9
1,511,609	-		GFF1487	0.65	+0.6
1,511,630	-		GFF1487	0.69	-0.5
1,511,650	+		GFF1487	0.72	-0.3
1,511,671	-		GFF1487	0.76	-0.4
1,511,673	+		GFF1487	0.76	-2.5
1,511,676	-		GFF1487	0.77	-0.0
1,511,676	-		GFF1487	0.77	+0.8
1,511,676	-		GFF1487	0.77	+1.0
1,511,697	+		GFF1487	0.81	-1.3
1,511,697	-		GFF1487	0.81	-1.0
1,511,712	+		GFF1487	0.83	+1.4
1,511,716	-		GFF1487	0.84	+0.6
1,511,716	-		GFF1487	0.84	-0.4
1,511,721	-		GFF1487	0.85	-0.8
1,511,783	+				-0.5
1,511,788	+				+0.5
1,511,788	+				-1.4
1,511,788	+				-0.6
1,511,788	+				+1.0
1,511,788	+				-1.3
1,511,788	+				+0.3
1,511,788	+				-1.3
1,511,788	+				+0.4
1,511,788	+				+0.7
1,511,796	-				-0.8
1,511,796	-				+0.0
1,511,801	-				-1.9
1,511,805	+				-1.3