Strain Fitness in Sphingobium sp. HT1-2 around GFF131

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF129 and GFF130 are separated by 94 nucleotidesGFF130 and GFF131 are separated by 49 nucleotidesGFF131 and GFF132 are separated by 167 nucleotides GFF129 - Propionyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.3), at 123,223 to 124,755 GFF129 GFF130 - Excinuclease ABC, C subunit-like, at 124,850 to 125,140 GFF130 GFF131 - Methylmalonyl-CoA epimerase (EC 5.1.99.1) @ Ethylmalonyl-CoA epimerase, at 125,190 to 125,630 GFF131 GFF132 - Methylmalonyl-CoA mutase (EC 5.4.99.2) / B12 binding domain of Methylmalonyl-CoA mutase (EC 5.4.99.2), at 125,798 to 127,951 GFF132 Position (kb) 125 126Strain fitness (log2 ratio) -2 -1 0 1 2 3at 124.229 kb on + strand, within GFF129at 124.246 kb on - strand, within GFF129at 124.266 kb on + strand, within GFF129at 124.284 kb on - strand, within GFF129at 124.323 kb on + strand, within GFF129at 124.323 kb on + strand, within GFF129at 124.323 kb on + strand, within GFF129at 124.360 kb on - strand, within GFF129at 124.429 kb on + strand, within GFF129at 124.477 kb on + strand, within GFF129at 124.485 kb on - strand, within GFF129at 124.641 kb on - strandat 124.646 kb on + strandat 124.682 kb on + strandat 124.690 kb on - strandat 124.690 kb on - strandat 124.690 kb on - strandat 124.690 kb on - strandat 124.690 kb on - strandat 124.690 kb on - strandat 124.692 kb on + strandat 124.692 kb on + strandat 124.712 kb on - strandat 124.714 kb on + strandat 124.724 kb on + strandat 124.779 kb on - strandat 124.779 kb on - strandat 124.825 kb on + strandat 124.830 kb on + strandat 124.830 kb on + strandat 124.840 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.862 kb on + strandat 124.894 kb on + strand, within GFF130at 124.895 kb on + strand, within GFF130at 124.895 kb on + strand, within GFF130at 124.895 kb on + strand, within GFF130at 124.897 kb on + strand, within GFF130at 124.899 kb on + strand, within GFF130at 124.899 kb on + strand, within GFF130at 124.902 kb on - strand, within GFF130at 124.902 kb on - strand, within GFF130at 124.905 kb on - strand, within GFF130at 124.910 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.911 kb on + strand, within GFF130at 124.912 kb on - strand, within GFF130at 124.929 kb on + strand, within GFF130at 124.956 kb on - strand, within GFF130at 124.956 kb on - strand, within GFF130at 124.956 kb on - strand, within GFF130at 124.996 kb on - strand, within GFF130at 124.996 kb on - strand, within GFF130at 124.998 kb on + strand, within GFF130at 125.006 kb on - strand, within GFF130at 125.016 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.047 kb on + strand, within GFF130at 125.050 kb on - strand, within GFF130at 125.055 kb on - strand, within GFF130at 125.060 kb on - strand, within GFF130at 125.092 kb on + strand, within GFF130at 125.092 kb on + strand, within GFF130at 125.092 kb on + strand, within GFF130at 125.100 kb on - strand, within GFF130at 125.137 kb on - strandat 125.137 kb on - strandat 125.143 kb on - strandat 125.151 kb on + strandat 125.181 kb on + strandat 125.211 kb on - strandat 125.284 kb on + strand, within GFF131at 125.292 kb on - strand, within GFF131at 125.329 kb on - strand, within GFF131at 125.351 kb on - strand, within GFF131at 125.391 kb on + strand, within GFF131at 125.391 kb on + strand, within GFF131at 125.430 kb on - strand, within GFF131at 125.453 kb on - strand, within GFF131at 125.455 kb on + strand, within GFF131at 125.463 kb on - strand, within GFF131at 125.492 kb on + strand, within GFF131at 125.575 kb on - strand, within GFF131at 125.575 kb on - strand, within GFF131at 125.576 kb on + strand, within GFF131at 125.584 kb on - strand, within GFF131at 125.589 kb on - strandat 125.606 kb on - strandat 125.633 kb on - strandat 125.637 kb on - strandat 125.701 kb on + strandat 125.706 kb on + strandat 125.706 kb on + strandat 125.779 kb on + strandat 125.779 kb on + strandat 125.786 kb on + strandat 125.790 kb on + strandat 125.861 kb on + strandat 125.902 kb on + strandat 125.902 kb on + strandat 125.921 kb on + strandat 126.003 kb on - strandat 126.003 kb on - strandat 126.074 kb on + strand, within GFF132at 126.191 kb on - strand, within GFF132at 126.338 kb on - strand, within GFF132at 126.348 kb on + strand, within GFF132at 126.375 kb on - strand, within GFF132

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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124,229 + GFF129 0.66 +0.4
124,246 - GFF129 0.67 +0.1
124,266 + GFF129 0.68 -0.1
124,284 - GFF129 0.69 -0.0
124,323 + GFF129 0.72 -0.0
124,323 + GFF129 0.72 -0.8
124,323 + GFF129 0.72 -1.9
124,360 - GFF129 0.74 +1.5
124,429 + GFF129 0.79 -1.9
124,477 + GFF129 0.82 -0.3
124,485 - GFF129 0.82 +0.1
124,641 - -1.3
124,646 + +1.4
124,682 + -0.6
124,690 - +0.4
124,690 - -0.0
124,690 - +0.8
124,690 - -0.7
124,690 - +0.7
124,690 - -1.5
124,692 + -0.9
124,692 + +0.8
124,712 - -0.3
124,714 + +1.2
124,724 + -0.6
124,779 - +2.0
124,779 - -0.2
124,825 + -1.0
124,830 + +0.0
124,830 + -0.5
124,840 + +0.8
124,862 + -1.5
124,862 + +0.2
124,862 + +0.6
124,862 + +0.9
124,862 + -0.5
124,894 + GFF130 0.15 -1.0
124,895 + GFF130 0.15 +0.8
124,895 + GFF130 0.15 +1.0
124,895 + GFF130 0.15 +0.3
124,897 + GFF130 0.16 -1.2
124,899 + GFF130 0.17 -0.3
124,899 + GFF130 0.17 +0.6
124,902 - GFF130 0.18 -0.5
124,902 - GFF130 0.18 -2.0
124,905 - GFF130 0.19 -0.0
124,910 + GFF130 0.21 -0.4
124,911 + GFF130 0.21 -0.9
124,911 + GFF130 0.21 -0.7
124,911 + GFF130 0.21 -0.5
124,911 + GFF130 0.21 +0.4
124,912 - GFF130 0.21 -0.3
124,929 + GFF130 0.27 -1.0
124,956 - GFF130 0.36 +0.4
124,956 - GFF130 0.36 +0.5
124,956 - GFF130 0.36 -0.9
124,996 - GFF130 0.50 -0.4
124,996 - GFF130 0.50 -0.2
124,998 + GFF130 0.51 -0.5
125,006 - GFF130 0.54 +0.2
125,016 + GFF130 0.57 -0.4
125,047 + GFF130 0.68 +2.5
125,047 + GFF130 0.68 +1.5
125,047 + GFF130 0.68 +0.4
125,047 + GFF130 0.68 -0.6
125,047 + GFF130 0.68 -0.2
125,050 - GFF130 0.69 +0.7
125,055 - GFF130 0.70 +0.2
125,060 - GFF130 0.72 -1.7
125,092 + GFF130 0.83 -0.9
125,092 + GFF130 0.83 +0.6
125,092 + GFF130 0.83 -1.0
125,100 - GFF130 0.86 +0.3
125,137 - -0.6
125,137 - +0.0
125,143 - -0.6
125,151 + -1.9
125,181 + +1.2
125,211 - +0.7
125,284 + GFF131 0.21 +0.7
125,292 - GFF131 0.23 -0.0
125,329 - GFF131 0.32 +0.2
125,351 - GFF131 0.37 -0.3
125,391 + GFF131 0.46 +2.0
125,391 + GFF131 0.46 +1.0
125,430 - GFF131 0.54 +1.2
125,453 - GFF131 0.60 -0.4
125,455 + GFF131 0.60 +0.5
125,463 - GFF131 0.62 +0.8
125,492 + GFF131 0.68 +0.4
125,575 - GFF131 0.87 -0.6
125,575 - GFF131 0.87 -1.9
125,576 + GFF131 0.88 +0.4
125,584 - GFF131 0.89 -0.9
125,589 - -0.0
125,606 - -1.1
125,633 - -0.0
125,637 - +1.5
125,701 + -1.1
125,706 + -1.4
125,706 + -1.7
125,779 + -1.8
125,779 + +0.4
125,786 + +2.8
125,790 + +1.0
125,861 + +0.4
125,902 + +1.5
125,902 + -0.0
125,921 + +0.8
126,003 - +0.7
126,003 - +1.2
126,074 + GFF132 0.13 +0.2
126,191 - GFF132 0.18 +0.4
126,338 - GFF132 0.25 +0.7
126,348 + GFF132 0.26 +0.7
126,375 - GFF132 0.27 +1.2

Or see this region's nucleotide sequence