Strain Fitness in Sphingobium sp. HT1-2 around GFF1269

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,297,527	-		GFF1267	0.75	-0.8
1,297,540	-		GFF1267	0.76	-0.0
1,297,557	-		GFF1267	0.78	-1.0
1,297,557	-		GFF1267	0.78	-0.4
1,297,558	+		GFF1267	0.78	+0.7
1,297,563	+		GFF1267	0.78	-0.8
1,297,595	+		GFF1267	0.81	-1.8
1,297,597	+		GFF1267	0.81	-1.0
1,297,600	-		GFF1267	0.81	-0.4
1,297,660	+		GFF1267	0.85	+1.0
1,297,665	+		GFF1267	0.86	-0.1
1,297,670	-		GFF1267	0.86	+0.6
1,297,670	-		GFF1267	0.86	+0.5
1,297,675	+		GFF1267	0.86	-0.4
1,297,676	+		GFF1267	0.87	-0.9
1,297,676	+		GFF1267	0.87	-0.4
1,297,683	-		GFF1267	0.87	-0.4
1,297,684	-		GFF1267	0.87	+0.5
1,297,684	-		GFF1267	0.87	-0.0
1,297,714	-		GFF1267	0.89	-1.6
1,297,720	-		GFF1267	0.90	-2.3
1,297,760	+				+0.2
1,297,771	+				-1.3
1,297,796	-				+0.7
1,297,823	-				-0.9
1,297,824	+				-1.7
1,297,824	+				-0.4
1,297,828	-				-1.3
1,297,832	-				-1.0
1,297,832	-				-0.3
1,297,851	-				-0.5
1,297,877	+				-1.3
1,297,885	-				-1.9
1,297,886	+				+0.1
1,297,906	-				-0.6
1,297,917	+				+1.1
1,297,925	-				-0.3
1,297,925	-				-0.3
1,297,925	-				-1.4
1,297,925	-				-0.7
1,297,932	+				+1.6
1,297,935	-				-0.9
1,297,935	-				-2.4
1,297,935	-				-0.6
1,297,935	-				-0.3
1,297,942	-				-0.9
1,297,966	+				+0.1
1,297,966	+				-0.6
1,297,966	+				-1.2
1,297,974	-				-0.7
1,297,974	-				+0.5
1,297,991	+				-1.4
1,297,991	-				-2.2
1,297,999	-				-0.7
1,297,999	-				-0.9
1,297,999	-				-0.9
1,298,010	+				+0.9
1,298,018	-				-1.4
1,298,021	+				-0.3
1,298,052	+				-0.6
1,298,060	-				+0.5
1,298,060	-				+0.4
1,298,062	+				-2.3
1,298,074	+				-1.4
1,298,093	-				+0.0
1,298,104	+				-0.5
1,298,105	+				-0.7
1,298,112	-				-0.4
1,298,113	-				-1.4
1,298,141	+				+1.2
1,298,184	-				-0.0
1,298,189	-				+1.2
1,298,234	+		GFF1268	0.16	-0.4
1,298,237	-		GFF1268	0.17	-1.6
1,298,253	-		GFF1268	0.22	-0.2
1,298,253	-		GFF1268	0.22	-0.2
1,298,266	+		GFF1268	0.25	-1.1
1,298,266	+		GFF1268	0.25	+0.4
1,298,266	+		GFF1268	0.25	+0.4
1,298,274	-		GFF1268	0.28	-0.5
1,298,274	-		GFF1268	0.28	+1.5
1,298,281	+		GFF1268	0.30	-0.5
1,298,293	+		GFF1268	0.33	-1.4
1,298,293	+		GFF1268	0.33	-0.7
1,298,335	-		GFF1268	0.45	-0.2
1,298,339	+		GFF1268	0.46	-0.7
1,298,344	-		GFF1268	0.48	-1.5
1,298,373	+		GFF1268	0.56	-0.8
1,298,383	+		GFF1268	0.59	-0.2
1,298,385	-		GFF1268	0.59	-0.7
1,298,461	-		GFF1268	0.81	-0.3
1,298,467	+		GFF1268	0.83	-0.5
1,298,467	+		GFF1268	0.83	+0.0
1,298,467	+		GFF1268	0.83	+0.6
1,298,467	+		GFF1268	0.83	+0.0
1,298,475	-		GFF1268	0.85	-0.6
1,298,510	+				-0.6
1,298,510	+				-1.2
1,298,531	-				-0.4
1,298,531	-				+0.3
1,298,531	-				-0.6
1,298,531	-				-0.5
1,298,531	-				+0.1
1,298,541	+				-0.8
1,298,541	+				+0.1
1,298,542	+				-0.5
1,298,542	+				-0.6
1,298,549	-				+1.1
1,298,549	-				+0.3
1,298,549	-				-0.5
1,298,550	-				-0.8
1,298,550	-				-0.9
1,298,572	+				-1.3
1,298,572	+				-1.6
1,298,621	+		GFF1269	0.13	-0.5
1,298,628	+		GFF1269	0.14	-2.6
1,298,629	-		GFF1269	0.15	+0.2
1,298,636	-		GFF1269	0.15	-0.5
1,298,674	+		GFF1269	0.21	-1.0
1,298,679	+		GFF1269	0.21	-0.6
1,298,682	-		GFF1269	0.22	-2.2
1,298,682	-		GFF1269	0.22	-1.1
1,298,682	-		GFF1269	0.22	-1.3
1,298,719	-		GFF1269	0.27	-0.7
1,298,925	-		GFF1269	0.56	-0.7
1,298,944	+		GFF1269	0.58	-1.0
1,298,950	+		GFF1269	0.59	-0.3
1,298,950	+		GFF1269	0.59	-0.5
1,298,951	+		GFF1269	0.59	-1.7
1,298,958	-		GFF1269	0.60	-1.3
1,298,958	-		GFF1269	0.60	-0.7
1,298,958	-		GFF1269	0.60	-0.3
1,299,044	-		GFF1269	0.72	-0.1
1,299,091	+		GFF1269	0.79	-0.9
1,299,101	-		GFF1269	0.80	+0.6
1,299,101	-		GFF1269	0.80	-1.7
1,299,147	-		GFF1269	0.87	-0.1
1,299,151	+		GFF1269	0.87	-1.3
1,299,187	+				-1.3
1,299,187	+				+0.4
1,299,195	-				+0.6
1,299,195	-				-0.4
1,299,195	-				-0.0
1,299,195	-				+0.6
1,299,249	+				-0.3
1,299,249	+				-0.4
1,299,249	+				-0.7
1,299,249	+				-1.2
1,299,254	+				+0.0
1,299,257	-				-2.0
1,299,262	-				-0.8
1,299,267	-				-0.2
1,299,281	+				+0.3
1,299,289	-				+0.0
1,299,289	-				+1.7
1,299,289	-				+0.2
1,299,289	-				-0.3
1,299,299	-				-1.9
1,299,306	-				+0.3
1,299,402	+				+0.2
1,299,402	+				-0.4
1,299,463	+				-0.9
1,299,463	+				-0.8
1,299,463	+				+0.2
1,299,470	+				-1.1
1,299,470	+				-0.9
1,299,471	-				+0.1
1,299,478	-				-0.5
1,299,478	-				+0.8
1,299,517	+		GFF1270	0.11	+0.2
1,299,530	-		GFF1270	0.13	+0.6
1,299,553	-		GFF1270	0.16	-1.3
1,299,555	+		GFF1270	0.16	-0.9
1,299,563	-		GFF1270	0.17	+0.5
1,299,570	+		GFF1270	0.18	-0.7
1,299,601	+		GFF1270	0.22	+1.1
1,299,609	-		GFF1270	0.23	-1.4
1,299,614	+		GFF1270	0.24	-0.0
1,299,614	+		GFF1270	0.24	-0.2
1,299,635	+		GFF1270	0.26	+0.1
1,299,635	+		GFF1270	0.26	+0.8
1,299,635	+		GFF1270	0.26	-2.2
1,299,635	+		GFF1270	0.26	-0.3
1,299,635	+		GFF1270	0.26	-2.2
1,299,635	+		GFF1270	0.26	+0.4
1,299,635	+		GFF1270	0.26	-1.2
1,299,635	+		GFF1270	0.26	+0.8
1,299,635	+		GFF1270	0.26	-0.3
1,299,635	+		GFF1270	0.26	-1.2
1,299,635	+		GFF1270	0.26	-0.9
1,299,635	+		GFF1270	0.26	-0.3
1,299,635	+		GFF1270	0.26	-1.1
1,299,635	+		GFF1270	0.26	+0.5
1,299,635	+		GFF1270	0.26	-0.7
1,299,635	+		GFF1270	0.26	-0.2
1,299,635	+		GFF1270	0.26	-0.0
1,299,640	+		GFF1270	0.27	-0.3
1,299,640	+		GFF1270	0.27	-1.2
1,299,640	+		GFF1270	0.27	-1.1
1,299,640	+		GFF1270	0.27	-0.7
1,299,643	-		GFF1270	0.28	-0.9
1,299,643	-		GFF1270	0.28	-1.0
1,299,643	-		GFF1270	0.28	-1.7
1,299,643	-		GFF1270	0.28	+0.5
1,299,643	-		GFF1270	0.28	-1.7
1,299,643	-		GFF1270	0.28	-1.7
1,299,643	-		GFF1270	0.28	-0.3
1,299,643	-		GFF1270	0.28	-0.4
1,299,643	-		GFF1270	0.28	-0.2
1,299,643	-		GFF1270	0.28	-0.8
1,299,643	-		GFF1270	0.28	-2.0
1,299,643	-		GFF1270	0.28	-0.8
1,299,643	-		GFF1270	0.28	-1.3
1,299,643	-		GFF1270	0.28	-0.3
1,299,643	-		GFF1270	0.28	-0.2
1,299,643	-		GFF1270	0.28	+0.2
1,299,643	-		GFF1270	0.28	-1.1
1,299,648	-		GFF1270	0.28	-0.9
1,299,648	-		GFF1270	0.28	+1.3
1,299,659	+		GFF1270	0.30	-1.7
1,299,659	+		GFF1270	0.30	-0.8
1,299,676	-		GFF1270	0.32	-1.1
1,299,696	+		GFF1270	0.34	+1.3
1,299,709	+		GFF1270	0.36	-0.4
1,299,713	+		GFF1270	0.37	-0.6
1,299,717	-		GFF1270	0.37	-0.7
1,299,726	+		GFF1270	0.38	+0.1
1,299,734	-		GFF1270	0.39	-0.9
1,299,755	-		GFF1270	0.42	-0.3
1,299,755	-		GFF1270	0.42	-0.4
1,299,755	-		GFF1270	0.42	-2.0
1,299,768	-		GFF1270	0.44	-2.2
1,299,768	-		GFF1270	0.44	-1.3
1,299,785	+		GFF1270	0.46	-0.3
1,299,793	-		GFF1270	0.47	-0.5
1,299,793	-		GFF1270	0.47	-0.0
1,299,806	+		GFF1270	0.49	-0.6
1,299,833	+		GFF1270	0.52	-1.1
1,299,842	+		GFF1270	0.53	+1.4
1,299,850	+		GFF1270	0.54	+0.7
1,299,858	-		GFF1270	0.55	+0.5
1,299,871	+		GFF1270	0.57	-1.1
1,299,896	+		GFF1270	0.60	-2.4
1,299,902	+		GFF1270	0.61	-0.0
1,299,904	-		GFF1270	0.61	-0.3
1,299,914	+		GFF1270	0.63	+0.9
1,299,914	+		GFF1270	0.63	-0.7
1,299,914	+		GFF1270	0.63	-0.0
1,299,914	+		GFF1270	0.63	-0.4
1,299,922	-		GFF1270	0.64	-0.7
1,299,922	-		GFF1270	0.64	+0.0
1,299,943	-		GFF1270	0.66	-1.3
1,299,945	+		GFF1270	0.67	+0.2
1,299,952	+		GFF1270	0.67	+0.6
1,299,961	+		GFF1270	0.69	+0.6
1,299,962	-		GFF1270	0.69	-0.9
1,299,969	-		GFF1270	0.70	-0.6
1,299,969	-		GFF1270	0.70	+0.6
1,299,973	+		GFF1270	0.70	-1.6
1,299,977	+		GFF1270	0.71	-1.3
1,299,981	-		GFF1270	0.71	-0.3
1,299,983	+		GFF1270	0.71	-0.0
1,299,985	-		GFF1270	0.72	-1.5
1,299,989	+		GFF1270	0.72	-2.0
1,299,990	-		GFF1270	0.72	-1.3
1,299,990	-		GFF1270	0.72	+1.6
1,299,990	-		GFF1270	0.72	-0.6
1,299,991	-		GFF1270	0.72	-1.0
1,300,043	+		GFF1270	0.79	-0.6
1,300,062	+		GFF1270	0.82	-0.3
1,300,070	-		GFF1270	0.83	-1.3
1,300,114	-		GFF1270	0.88	-1.5
1,300,115	+		GFF1270	0.89	-1.3
1,300,118	-		GFF1270	0.89	-2.0
1,300,128	+				-2.0
1,300,136	-				-0.0
1,300,142	+				-1.7
1,300,150	-				-1.1
1,300,150	-				-0.4
1,300,154	-				-0.6
1,300,156	-				-1.1
1,300,162	-				+0.2
1,300,165	+				+0.1