Strain Fitness in Sphingobium sp. HT1-2 around GFF1255

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,282,382	+		GFF1254	0.32	+0.3
1,282,382	+		GFF1254	0.32	+0.3
1,282,382	+		GFF1254	0.32	-1.8
1,282,387	+		GFF1254	0.32	-0.8
1,282,387	+		GFF1254	0.32	-1.0
1,282,390	-		GFF1254	0.32	-1.4
1,282,390	-		GFF1254	0.32	-1.0
1,282,390	-		GFF1254	0.32	-0.3
1,282,392	+		GFF1254	0.33	-1.6
1,282,400	-		GFF1254	0.33	-1.0
1,282,400	-		GFF1254	0.33	-0.7
1,282,431	+		GFF1254	0.35	-0.7
1,282,431	+		GFF1254	0.35	-0.3
1,282,431	+		GFF1254	0.35	-0.5
1,282,453	+		GFF1254	0.37	+0.6
1,282,453	+		GFF1254	0.37	+0.4
1,282,453	+		GFF1254	0.37	+0.0
1,282,456	+		GFF1254	0.37	+0.3
1,282,461	-		GFF1254	0.37	-0.0
1,282,471	+		GFF1254	0.38	+0.1
1,282,471	+		GFF1254	0.38	+0.4
1,282,471	+		GFF1254	0.38	+1.0
1,282,471	+		GFF1254	0.38	-1.3
1,282,479	-		GFF1254	0.39	+0.7
1,282,479	-		GFF1254	0.39	-0.7
1,282,479	-		GFF1254	0.39	-0.3
1,282,479	-		GFF1254	0.39	-1.8
1,282,479	-		GFF1254	0.39	-0.3
1,282,479	-		GFF1254	0.39	-0.6
1,282,479	-		GFF1254	0.39	-0.8
1,282,504	-		GFF1254	0.41	+0.7
1,282,504	-		GFF1254	0.41	-0.6
1,282,513	-		GFF1254	0.41	-0.5
1,282,528	-		GFF1254	0.42	-0.3
1,282,536	+		GFF1254	0.43	+0.3
1,282,536	+		GFF1254	0.43	-1.1
1,282,544	-		GFF1254	0.43	-1.9
1,282,544	-		GFF1254	0.43	-1.4
1,282,544	-		GFF1254	0.43	-1.8
1,282,551	-		GFF1254	0.44	-1.0
1,282,552	-		GFF1254	0.44	+0.7
1,282,556	+		GFF1254	0.44	-0.8
1,282,561	+		GFF1254	0.45	+0.5
1,282,564	-		GFF1254	0.45	+0.7
1,282,577	+		GFF1254	0.46	+0.2
1,282,582	+		GFF1254	0.46	-0.9
1,282,587	+		GFF1254	0.46	-1.8
1,282,592	+		GFF1254	0.47	-0.4
1,282,601	+		GFF1254	0.47	+0.5
1,282,616	+		GFF1254	0.48	-1.0
1,282,616	+		GFF1254	0.48	+0.3
1,282,619	-		GFF1254	0.49	+0.2
1,282,624	-		GFF1254	0.49	-0.2
1,282,626	+		GFF1254	0.49	-1.0
1,282,626	+		GFF1254	0.49	-1.7
1,282,634	-		GFF1254	0.50	-1.2
1,282,634	-		GFF1254	0.50	+0.7
1,282,666	+		GFF1254	0.52	+1.0
1,282,669	-		GFF1254	0.52	-1.4
1,282,671	+		GFF1254	0.52	-1.6
1,282,671	+		GFF1254	0.52	+1.3
1,282,674	-		GFF1254	0.52	-0.5
1,282,687	+		GFF1254	0.53	+1.1
1,282,695	-		GFF1254	0.54	-0.6
1,282,737	+		GFF1254	0.57	-0.8
1,282,738	+		GFF1254	0.57	-0.4
1,282,738	+		GFF1254	0.57	+0.9
1,282,738	+		GFF1254	0.57	-2.0
1,282,745	+		GFF1254	0.57	-1.8
1,282,746	-		GFF1254	0.58	+0.1
1,282,753	-		GFF1254	0.58	-1.4
1,282,753	-		GFF1254	0.58	-0.1
1,282,769	+		GFF1254	0.59	+0.3
1,282,769	+		GFF1254	0.59	-0.5
1,282,771	-		GFF1254	0.59	-1.3
1,282,777	-		GFF1254	0.60	-0.3
1,282,801	-		GFF1254	0.61	-1.0
1,282,826	+		GFF1254	0.63	-0.5
1,282,842	+		GFF1254	0.64	+0.2
1,282,850	-		GFF1254	0.65	+0.7
1,282,858	+		GFF1254	0.65	-1.2
1,282,860	-		GFF1254	0.66	-1.9
1,282,868	+		GFF1254	0.66	+0.6
1,282,873	+		GFF1254	0.66	-1.1
1,282,876	-		GFF1254	0.67	+0.3
1,282,919	+		GFF1254	0.70	+0.5
1,282,945	+		GFF1254	0.72	+0.4
1,282,953	-		GFF1254	0.72	-0.3
1,282,953	-		GFF1254	0.72	-1.3
1,282,954	+		GFF1254	0.72	-1.5
1,282,954	+		GFF1254	0.72	+1.1
1,282,954	+		GFF1254	0.72	-1.1
1,282,959	+		GFF1254	0.73	-0.7
1,282,959	+		GFF1254	0.73	+0.7
1,282,959	+		GFF1254	0.73	-1.9
1,282,959	+		GFF1254	0.73	+0.2
1,282,962	-		GFF1254	0.73	-1.9
1,282,962	-		GFF1254	0.73	-0.3
1,282,962	-		GFF1254	0.73	+1.3
1,282,962	-		GFF1254	0.73	-0.7
1,282,969	+		GFF1254	0.73	-0.9
1,282,977	-		GFF1254	0.74	+0.4
1,282,977	-		GFF1254	0.74	+1.0
1,282,982	-		GFF1254	0.74	-0.8
1,282,987	-		GFF1254	0.74	-0.3
1,282,992	-		GFF1254	0.75	+0.6
1,282,992	-		GFF1254	0.75	-1.8
1,283,000	+		GFF1254	0.75	+0.3
1,283,000	+		GFF1254	0.75	-1.1
1,283,000	+		GFF1254	0.75	-1.9
1,283,008	+		GFF1254	0.76	+0.9
1,283,008	-		GFF1254	0.76	-1.0
1,283,008	-		GFF1254	0.76	+0.1
1,283,008	-		GFF1254	0.76	+1.6
1,283,008	-		GFF1254	0.76	+0.5
1,283,008	-		GFF1254	0.76	-0.5
1,283,008	-		GFF1254	0.76	-0.9
1,283,008	-		GFF1254	0.76	-0.8
1,283,008	-		GFF1254	0.76	-0.5
1,283,008	-		GFF1254	0.76	-1.4
1,283,008	-		GFF1254	0.76	-0.4
1,283,010	+		GFF1254	0.76	-1.7
1,283,010	+		GFF1254	0.76	-0.6
1,283,015	+		GFF1254	0.76	-0.9
1,283,016	-		GFF1254	0.77	+0.9
1,283,016	-		GFF1254	0.77	-0.2
1,283,018	-		GFF1254	0.77	-0.6
1,283,023	+		GFF1254	0.77	+0.3
1,283,023	-		GFF1254	0.77	-0.3
1,283,023	-		GFF1254	0.77	-0.2
1,283,023	-		GFF1254	0.77	-0.4
1,283,033	+		GFF1254	0.78	-1.7
1,283,069	-		GFF1254	0.80	+0.3
1,283,085	-		GFF1254	0.81	+0.4
1,283,114	-		GFF1254	0.83	+0.3
1,283,181	+		GFF1254	0.88	+1.3
1,283,181	+		GFF1254	0.88	-0.1
1,283,181	+		GFF1254	0.88	-1.5
1,283,181	+		GFF1254	0.88	-0.4
1,283,181	+		GFF1254	0.88	-0.8
1,283,181	+		GFF1254	0.88	-1.4
1,283,181	+		GFF1254	0.88	+1.0
1,283,181	+		GFF1254	0.88	+0.2
1,283,181	+		GFF1254	0.88	-0.4
1,283,189	-		GFF1254	0.89	-1.8
1,283,189	-		GFF1254	0.89	-0.2
1,283,193	+		GFF1254	0.89	-0.1
1,283,194	-		GFF1254	0.89	-2.3
1,283,200	-		GFF1254	0.89	+1.1
1,283,264	+				-0.8
1,283,267	-				+0.8
1,283,301	-				-0.6
1,283,325	+				+0.2
1,283,325	+				+0.3
1,283,325	+				-1.3
1,283,325	+				-0.3
1,283,325	+				-1.1
1,283,325	+				+0.5
1,283,333	-				-0.2
1,283,333	-				-0.0
1,283,342	+				-0.6
1,283,342	+				+0.3
1,283,357	+				+0.5
1,283,358	+				-1.9
1,283,358	+				-0.3
1,283,359	+				+0.5
1,283,359	+				+0.0
1,283,359	+				-1.1
1,283,359	+				-1.0
1,283,359	+				+0.3
1,283,359	+				-1.4
1,283,363	+				+0.3
1,283,366	-				+0.4
1,283,367	-				-2.0
1,283,367	-				+0.5
1,283,367	-				-0.2
1,283,367	-				+0.0
1,283,367	-				+0.7
1,283,367	-				-1.4
1,283,367	-				+0.4
1,283,367	-				-0.2
1,283,367	-				-0.9
1,283,408	+				-0.1
1,283,408	+				-0.0
1,283,426	-				-0.5
1,283,426	-				-1.4
1,283,431	-				-0.9
1,283,445	+				-0.6
1,283,454	-				-2.6
1,283,464	+				-0.1
1,283,471	+				-0.9
1,283,488	+		GFF1255	0.10	-0.9
1,283,488	+		GFF1255	0.10	-2.4
1,283,488	+		GFF1255	0.10	-0.8
1,283,494	+		GFF1255	0.11	-0.1
1,283,498	+		GFF1255	0.11	-0.7
1,283,506	-		GFF1255	0.12	-0.4
1,283,512	+		GFF1255	0.12	-1.4
1,283,518	+		GFF1255	0.13	+0.4
1,283,530	+		GFF1255	0.14	+0.6
1,283,538	-		GFF1255	0.14	+1.7
1,283,548	-		GFF1255	0.15	+1.2
1,283,549	+		GFF1255	0.15	-1.3
1,283,577	+		GFF1255	0.17	-1.2
1,283,587	+		GFF1255	0.18	-1.1
1,283,587	+		GFF1255	0.18	-1.3
1,283,587	+		GFF1255	0.18	-0.3
1,283,587	+		GFF1255	0.18	-0.9
1,283,587	+		GFF1255	0.18	-1.4
1,283,587	+		GFF1255	0.18	+0.4
1,283,587	+		GFF1255	0.18	-0.4
1,283,587	+		GFF1255	0.18	+0.1
1,283,587	+		GFF1255	0.18	+0.4
1,283,587	+		GFF1255	0.18	-0.0
1,283,587	+		GFF1255	0.18	-0.7
1,283,587	+		GFF1255	0.18	+0.4
1,283,587	+		GFF1255	0.18	-0.7
1,283,587	+		GFF1255	0.18	-0.3
1,283,587	+		GFF1255	0.18	+0.0
1,283,587	+		GFF1255	0.18	-0.1
1,283,587	-		GFF1255	0.18	-0.6
1,283,595	-		GFF1255	0.18	-0.4
1,283,595	-		GFF1255	0.18	-1.8
1,283,595	-		GFF1255	0.18	+0.7
1,283,595	-		GFF1255	0.18	-0.0
1,283,602	-		GFF1255	0.19	+0.6
1,283,611	+		GFF1255	0.20	+0.6
1,283,630	-		GFF1255	0.21	-1.2
1,283,647	-		GFF1255	0.22	-1.3
1,283,648	+		GFF1255	0.22	+0.4
1,283,667	-		GFF1255	0.24	+0.6
1,283,675	-		GFF1255	0.24	-0.2
1,283,687	+		GFF1255	0.25	+0.2
1,283,702	+		GFF1255	0.26	-1.3
1,283,705	+		GFF1255	0.26	+0.2
1,283,723	+		GFF1255	0.28	-1.3
1,283,723	+		GFF1255	0.28	-1.0
1,283,730	+		GFF1255	0.28	-1.2
1,283,738	+		GFF1255	0.29	+0.4
1,283,738	-		GFF1255	0.29	-0.6
1,283,793	+		GFF1255	0.33	-0.5
1,283,798	+		GFF1255	0.33	-1.0
1,283,798	+		GFF1255	0.33	-0.3
1,283,801	-		GFF1255	0.34	+0.6
1,283,801	-		GFF1255	0.34	-1.9
1,283,801	-		GFF1255	0.34	+1.7
1,283,801	-		GFF1255	0.34	-1.8
1,283,806	+		GFF1255	0.34	-0.7
1,283,806	-		GFF1255	0.34	-0.6
1,283,814	-		GFF1255	0.35	-1.4
1,283,823	-		GFF1255	0.35	+0.6
1,283,823	-		GFF1255	0.35	+1.5
1,283,824	-		GFF1255	0.35	+0.8
1,283,851	-		GFF1255	0.37	-1.0
1,283,853	-		GFF1255	0.37	-0.6
1,283,880	-		GFF1255	0.39	-0.1
1,283,899	-		GFF1255	0.41	+0.5
1,283,899	-		GFF1255	0.41	+1.2
1,283,899	-		GFF1255	0.41	-0.6
1,283,940	-		GFF1255	0.44	-0.7
1,283,979	+		GFF1255	0.47	+0.4
1,283,984	+		GFF1255	0.47	+0.1
1,283,989	+		GFF1255	0.47	-1.0
1,283,992	+		GFF1255	0.48	-0.6
1,283,992	-		GFF1255	0.48	+0.5
1,283,997	-		GFF1255	0.48	-0.5
1,284,000	-		GFF1255	0.48	+1.1
1,284,002	+		GFF1255	0.48	-1.2
1,284,002	+		GFF1255	0.48	-1.0
1,284,008	+		GFF1255	0.49	-0.7
1,284,009	+		GFF1255	0.49	-1.9
1,284,011	-		GFF1255	0.49	-0.7
1,284,012	-		GFF1255	0.49	-0.8
1,284,016	-		GFF1255	0.49	-1.8
1,284,035	+		GFF1255	0.51	+0.2
1,284,041	+		GFF1255	0.51	+0.6
1,284,043	-		GFF1255	0.51	-0.2
1,284,049	-		GFF1255	0.52	+0.2
1,284,057	+		GFF1255	0.52	+0.5
1,284,065	+		GFF1255	0.53	-0.4
1,284,112	-		GFF1255	0.56	+0.8
1,284,120	+		GFF1255	0.57	-1.0
1,284,126	+		GFF1255	0.58	-1.6
1,284,135	-		GFF1255	0.58	-1.3
1,284,135	-		GFF1255	0.58	-1.0
1,284,145	+		GFF1255	0.59	+1.4
1,284,150	+		GFF1255	0.59	-0.2
1,284,150	+		GFF1255	0.59	-0.7
1,284,158	+		GFF1255	0.60	-0.3
1,284,158	-		GFF1255	0.60	-1.6
1,284,158	-		GFF1255	0.60	-0.7
1,284,158	-		GFF1255	0.60	-0.6
1,284,158	-		GFF1255	0.60	-0.5
1,284,159	+		GFF1255	0.60	-0.9
1,284,166	-		GFF1255	0.60	+0.8
1,284,198	+		GFF1255	0.63	+0.3
1,284,209	+		GFF1255	0.64	-1.1
1,284,228	+		GFF1255	0.65	-0.4
1,284,236	-		GFF1255	0.66	+0.6
1,284,236	-		GFF1255	0.66	+0.6
1,284,250	-		GFF1255	0.67	-1.2
1,284,262	+		GFF1255	0.68	-1.1
1,284,292	-		GFF1255	0.70	-1.4
1,284,314	-		GFF1255	0.71	-1.6
1,284,321	-		GFF1255	0.72	+2.1
1,284,329	-		GFF1255	0.72	-0.1
1,284,336	+		GFF1255	0.73	+0.2
1,284,336	+		GFF1255	0.73	-1.1
1,284,336	+		GFF1255	0.73	+0.8
1,284,345	-		GFF1255	0.74	-0.4
1,284,355	-		GFF1255	0.74	-1.4
1,284,381	+		GFF1255	0.76	-1.8
1,284,387	+		GFF1255	0.77	-1.4
1,284,397	+		GFF1255	0.78	-1.3
1,284,397	+		GFF1255	0.78	+0.5
1,284,399	-		GFF1255	0.78	+0.8
1,284,423	-		GFF1255	0.79	-0.4
1,284,446	+		GFF1255	0.81	+0.3
1,284,446	+		GFF1255	0.81	+0.2
1,284,446	+		GFF1255	0.81	-0.3
1,284,446	+		GFF1255	0.81	-0.4
1,284,446	+		GFF1255	0.81	+0.9
1,284,451	+		GFF1255	0.81	-0.0
1,284,451	+		GFF1255	0.81	-0.2
1,284,454	-		GFF1255	0.82	-1.9
1,284,454	-		GFF1255	0.82	+1.1
1,284,454	-		GFF1255	0.82	-2.3
1,284,459	-		GFF1255	0.82	+0.2
1,284,459	-		GFF1255	0.82	-1.2
1,284,497	+		GFF1255	0.85	-1.2
1,284,497	+		GFF1255	0.85	+0.0
1,284,504	+		GFF1255	0.85	-0.7
1,284,504	+		GFF1255	0.85	-2.8
1,284,504	-		GFF1255	0.85	-0.7
1,284,509	+		GFF1255	0.86	-0.9
1,284,509	+		GFF1255	0.86	-1.3
1,284,509	+		GFF1255	0.86	-1.1
1,284,517	-		GFF1255	0.86	+0.9
1,284,517	-		GFF1255	0.86	-0.9
1,284,517	-		GFF1255	0.86	-1.3
1,284,517	-		GFF1255	0.86	-0.6
1,284,521	+		GFF1255	0.87	+0.4
1,284,532	+		GFF1255	0.87	-1.4
1,284,532	+		GFF1255	0.87	-0.0
1,284,532	+		GFF1255	0.87	-1.4
1,284,532	+		GFF1255	0.87	+0.8
1,284,532	+		GFF1255	0.87	-1.0
1,284,532	+		GFF1255	0.87	+1.2
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