Strain Fitness in Sphingobium sp. HT1-2 around GFF1237

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,264,379	+		GFF1235	0.28	-0.4
1,264,387	-		GFF1235	0.28	-0.8
1,264,387	-		GFF1235	0.28	+0.3
1,264,403	+		GFF1235	0.30	+0.2
1,264,419	+		GFF1235	0.31	-0.7
1,264,437	-		GFF1235	0.33	-0.2
1,264,452	+		GFF1235	0.34	+0.9
1,264,472	+		GFF1235	0.36	+0.2
1,264,479	+		GFF1235	0.36	-1.6
1,264,487	-		GFF1235	0.37	-0.7
1,264,504	-		GFF1235	0.38	-2.2
1,264,509	-		GFF1235	0.39	-2.1
1,264,509	-		GFF1235	0.39	+0.7
1,264,521	+		GFF1235	0.40	-0.8
1,264,521	+		GFF1235	0.40	-1.8
1,264,528	-		GFF1235	0.40	-1.3
1,264,528	-		GFF1235	0.40	+0.4
1,264,571	+		GFF1235	0.44	-1.7
1,264,607	+		GFF1235	0.47	-1.8
1,264,607	+		GFF1235	0.47	+1.1
1,264,607	+		GFF1235	0.47	-0.7
1,264,607	+		GFF1235	0.47	-0.4
1,264,607	+		GFF1235	0.47	+0.3
1,264,615	-		GFF1235	0.48	-1.8
1,264,622	+		GFF1235	0.49	-0.2
1,264,622	+		GFF1235	0.49	-0.1
1,264,622	+		GFF1235	0.49	-1.0
1,264,631	-		GFF1235	0.49	-0.5
1,264,635	+		GFF1235	0.50	-0.1
1,264,636	-		GFF1235	0.50	+1.3
1,264,641	-		GFF1235	0.50	+0.7
1,264,641	-		GFF1235	0.50	-0.4
1,264,670	+		GFF1235	0.53	+0.5
1,264,696	+		GFF1235	0.55	-0.1
1,264,696	+		GFF1235	0.55	-0.9
1,264,696	+		GFF1235	0.55	-2.7
1,264,696	+		GFF1235	0.55	+0.4
1,264,696	+		GFF1235	0.55	-0.3
1,264,699	-		GFF1235	0.55	-0.7
1,264,703	-		GFF1235	0.55	-0.7
1,264,704	-		GFF1235	0.55	-1.9
1,264,704	-		GFF1235	0.55	-1.4
1,264,704	-		GFF1235	0.55	+2.0
1,264,704	-		GFF1235	0.55	+0.9
1,264,704	-		GFF1235	0.55	-1.6
1,264,718	-		GFF1235	0.57	-0.7
1,264,737	-		GFF1235	0.58	-0.5
1,264,745	+		GFF1235	0.59	-0.7
1,264,753	-		GFF1235	0.60	+0.0
1,264,768	+		GFF1235	0.61	-0.6
1,264,768	+		GFF1235	0.61	-1.7
1,264,768	+		GFF1235	0.61	-0.8
1,264,768	+		GFF1235	0.61	+0.4
1,264,769	-		GFF1235	0.61	-0.4
1,264,776	-		GFF1235	0.62	-0.2
1,264,796	-		GFF1235	0.63	-0.9
1,264,859	+		GFF1235	0.69	-1.4
1,264,865	+		GFF1235	0.69	-0.7
1,264,865	+		GFF1235	0.69	-0.6
1,264,867	+		GFF1235	0.69	-1.3
1,264,873	-		GFF1235	0.70	+0.6
1,264,912	-		GFF1235	0.73	-0.9
1,264,922	+		GFF1235	0.74	+1.0
1,264,930	-		GFF1235	0.75	-0.8
1,264,945	+		GFF1235	0.76	+0.3
1,264,981	+		GFF1235	0.79	+0.3
1,264,981	+		GFF1235	0.79	-0.7
1,264,981	+		GFF1235	0.79	-0.6
1,264,981	+		GFF1235	0.79	-1.4
1,264,981	+		GFF1235	0.79	-0.3
1,264,981	+		GFF1235	0.79	-1.5
1,264,981	+		GFF1235	0.79	+0.6
1,264,989	-		GFF1235	0.80	-1.5
1,264,989	-		GFF1235	0.80	-0.3
1,264,991	+		GFF1235	0.80	-1.0
1,264,998	+		GFF1235	0.81	-1.0
1,264,999	-		GFF1235	0.81	+0.7
1,264,999	-		GFF1235	0.81	-0.3
1,264,999	-		GFF1235	0.81	-0.9
1,264,999	-		GFF1235	0.81	-0.3
1,265,000	+		GFF1235	0.81	-1.5
1,265,000	+		GFF1235	0.81	-0.4
1,265,013	-		GFF1235	0.82	-0.8
1,265,013	-		GFF1235	0.82	+1.3
1,265,021	+		GFF1235	0.83	-1.0
1,265,028	+		GFF1235	0.83	-0.3
1,265,028	+		GFF1235	0.83	+0.4
1,265,028	+		GFF1235	0.83	+0.7
1,265,036	-		GFF1235	0.84	-0.9
1,265,036	-		GFF1235	0.84	-1.6
1,265,058	+		GFF1235	0.86	-0.8
1,265,063	+		GFF1235	0.86	-1.7
1,265,063	+		GFF1235	0.86	-0.6
1,265,063	+		GFF1235	0.86	-0.7
1,265,066	-		GFF1235	0.86	-0.3
1,265,067	+		GFF1235	0.86	-1.0
1,265,071	-		GFF1235	0.87	-1.6
1,265,071	-		GFF1235	0.87	-1.1
1,265,071	-		GFF1235	0.87	+0.2
1,265,071	-		GFF1235	0.87	+1.0
1,265,074	-		GFF1235	0.87	-1.6
1,265,098	+		GFF1235	0.89	-1.4
1,265,106	-		GFF1235	0.90	-0.9
1,265,117	-				-1.6
1,265,124	-				+0.7
1,265,147	+				-1.3
1,265,147	+				-0.8
1,265,154	-				-0.6
1,265,168	+				-0.6
1,265,173	+				+1.7
1,265,176	-				-0.3
1,265,186	-				-0.2
1,265,221	+				-0.3
1,265,259	-				+0.1
1,265,263	+				-0.1
1,265,271	-		GFF1236	0.11	-1.9
1,265,271	-		GFF1236	0.11	-0.9
1,265,271	-		GFF1236	0.11	-0.3
1,265,271	-		GFF1236	0.11	-1.4
1,265,280	-		GFF1236	0.17	-1.0
1,265,286	+		GFF1236	0.21	+0.4
1,265,300	+		GFF1236	0.31	+0.9
1,265,313	-		GFF1236	0.40	-2.4
1,265,335	-		GFF1236	0.56	-0.1
1,265,337	+		GFF1236	0.57	-1.8
1,265,348	+		GFF1236	0.65	+0.0
1,265,351	+		GFF1236	0.67	-0.3
1,265,393	-				-1.9
1,265,408	+				-0.3
1,265,408	+				-0.8
1,265,416	-				-0.3
1,265,421	-				-0.8
1,265,431	-				-0.3
1,265,460	-		GFF1237	0.15	-0.9
1,265,476	-		GFF1237	0.18	-0.7
1,265,500	+		GFF1237	0.22	-2.6
1,265,541	+		GFF1237	0.29	+0.4
1,265,560	-		GFF1237	0.32	-0.7
1,265,570	-		GFF1237	0.34	-2.5
1,265,601	-		GFF1237	0.40	+0.3
1,265,603	+		GFF1237	0.40	-0.6
1,265,603	+		GFF1237	0.40	-0.3
1,265,608	+		GFF1237	0.41	+0.3
1,265,608	+		GFF1237	0.41	-0.1
1,265,608	+		GFF1237	0.41	-0.9
1,265,616	-		GFF1237	0.42	-0.0
1,265,616	-		GFF1237	0.42	-2.2
1,265,616	-		GFF1237	0.42	+0.7
1,265,620	+		GFF1237	0.43	+1.0
1,265,662	+		GFF1237	0.50	-0.2
1,265,662	+		GFF1237	0.50	-0.8
1,265,667	+		GFF1237	0.51	-0.7
1,265,686	+		GFF1237	0.55	+1.1
1,265,687	-		GFF1237	0.55	-1.1
1,265,744	-		GFF1237	0.65	-0.5
1,265,744	-		GFF1237	0.65	+1.2
1,265,747	-		GFF1237	0.65	-0.2
1,265,759	+		GFF1237	0.67	+0.4
1,265,764	+		GFF1237	0.68	-1.3
1,265,765	-		GFF1237	0.68	+2.0
1,265,767	-		GFF1237	0.69	-1.4
1,265,767	-		GFF1237	0.69	-0.6
1,265,767	-		GFF1237	0.69	+0.5
1,265,780	+		GFF1237	0.71	-0.5
1,265,790	+		GFF1237	0.73	-0.5
1,265,790	+		GFF1237	0.73	-1.4
1,265,793	-		GFF1237	0.73	-0.6
1,265,798	-		GFF1237	0.74	-1.9
1,265,821	+		GFF1237	0.78	+1.6
1,265,829	-		GFF1237	0.80	+1.4
1,265,868	+		GFF1237	0.86	-0.0
1,265,868	+		GFF1237	0.86	-0.4
1,265,874	+		GFF1237	0.88	+0.3
1,265,876	-		GFF1237	0.88	+0.0
1,265,876	-		GFF1237	0.88	+0.7
1,265,876	-		GFF1237	0.88	+0.6
1,265,876	-		GFF1237	0.88	-1.8
1,265,878	+		GFF1237	0.88	-0.3
1,265,886	+		GFF1237	0.90	-1.1
1,265,891	+				-0.4
1,265,894	-				-1.1
1,265,894	-				-0.6
1,265,894	-				+0.7
1,265,899	-				+0.4
1,265,899	-				+0.0
1,265,899	-				-0.3
1,265,899	-				-1.6
1,265,899	-				-0.7
1,265,913	+				-1.4
1,265,916	-				-1.2
1,265,918	+				-1.3
1,265,919	+				-0.5
1,265,921	-				-2.8
1,265,929	+				-0.8
1,265,956	-				-0.7
1,265,958	+				-0.7
1,265,958	+				-0.4
1,265,960	+				-1.8
1,265,966	-				+0.1
1,265,966	-				+1.1
1,265,966	-				-0.4
1,265,985	+				-1.5
1,266,020	+				+1.0
1,266,028	-				-1.7
1,266,028	-				+0.4
1,266,028	-				+1.0
1,266,028	-				+0.4
1,266,028	-				-2.0
1,266,028	-				-0.7
1,266,028	-				-2.1
1,266,030	+				-1.3
1,266,030	+				-0.8
1,266,038	-				-0.4
1,266,038	-				-0.1
1,266,044	+				-1.0
1,266,044	+				-1.0
1,266,047	-				+0.9
1,266,049	+				+1.1
1,266,049	+				+0.8
1,266,049	+				-0.1
1,266,049	+				-0.7
1,266,052	-				-0.3
1,266,057	-				+1.0
1,266,057	-				-1.0
1,266,082	+				-0.6
1,266,082	+				-1.3
1,266,082	+				-1.1
1,266,082	+				-0.1
1,266,082	+				-2.1
1,266,090	-				-0.3
1,266,090	-				-1.0
1,266,090	-				-2.0
1,266,090	-				-0.8
1,266,090	-				-0.6
1,266,103	-				+1.2
1,266,103	-				-0.4
1,266,140	+		GFF1238	0.12	-0.2
1,266,140	+		GFF1238	0.12	+0.5
1,266,140	+		GFF1238	0.12	-0.6
1,266,141	-		GFF1238	0.12	+0.0
1,266,147	+		GFF1238	0.12	-0.4
1,266,207	-		GFF1238	0.20	-1.0
1,266,207	-		GFF1238	0.20	-1.1
1,266,240	-		GFF1238	0.25	-1.8
1,266,240	-		GFF1238	0.25	+0.3
1,266,248	+		GFF1238	0.26	-0.0
1,266,250	-		GFF1238	0.26	-0.9
1,266,250	-		GFF1238	0.26	-0.5
1,266,319	-		GFF1238	0.35	-0.6
1,266,321	-		GFF1238	0.35	+0.8
1,266,353	+		GFF1238	0.40	-2.2
1,266,387	+		GFF1238	0.44	+0.1
1,266,397	+		GFF1238	0.46	-0.5
1,266,405	-		GFF1238	0.47	-0.4
1,266,405	-		GFF1238	0.47	-0.7
1,266,407	+		GFF1238	0.47	-0.5
1,266,407	+		GFF1238	0.47	-0.5
1,266,409	+		GFF1238	0.47	-0.7
1,266,413	-		GFF1238	0.48	-1.7
1,266,415	-		GFF1238	0.48	+0.3
1,266,436	+		GFF1238	0.51	-0.6
1,266,437	-		GFF1238	0.51	-1.4
1,266,444	-		GFF1238	0.52	-0.4
1,266,448	+		GFF1238	0.52	+0.3
1,266,448	+		GFF1238	0.52	-1.1
1,266,456	-		GFF1238	0.53	-0.5
1,266,472	+		GFF1238	0.55	-0.7
1,266,472	+		GFF1238	0.55	+0.5
1,266,472	+		GFF1238	0.55	+0.5
1,266,480	-		GFF1238	0.56	-2.7
1,266,482	+		GFF1238	0.57	-0.6
1,266,492	+		GFF1238	0.58	-0.7
1,266,497	+		GFF1238	0.59	-1.1
1,266,655	-		GFF1238	0.80	-0.8
1,266,662	-		GFF1238	0.81	-1.0
1,266,663	+		GFF1238	0.81	-1.2
1,266,668	-		GFF1238	0.81	-0.8
1,266,680	+		GFF1238	0.83	-0.4
1,266,685	+		GFF1238	0.84	-0.4
1,266,685	+		GFF1238	0.84	-0.8
1,266,686	-		GFF1238	0.84	-0.1
1,266,688	-		GFF1238	0.84	-1.6
1,266,693	-		GFF1238	0.85	-1.4
1,266,693	-		GFF1238	0.85	-1.0
1,266,694	-		GFF1238	0.85	-1.0
1,266,727	-		GFF1238	0.89	-1.3
1,266,732	+		GFF1238	0.90	-2.0
1,266,740	-				-0.3
1,266,758	-				+0.2
1,266,758	-				-1.2
1,266,758	-				-1.4
1,266,768	+				-1.9
1,266,776	-				-2.4
1,266,809	+				+0.2
1,266,809	+				-0.6
1,266,809	+				-0.6
1,266,814	+				-0.3
1,266,829	+				-2.1
1,266,829	+				-0.7
1,266,837	-				-1.6
1,266,837	-				-0.8
1,266,837	-				+0.7
1,266,844	+				-1.6
1,266,855	+				-1.0
1,266,855	+				-0.2
1,266,855	+				-1.2
1,266,855	+				-1.4
1,266,856	+				+1.3
1,266,858	-				-1.5
1,266,858	-				-0.3
1,266,863	-				-1.1
1,266,868	+				-1.1
1,266,868	+				-1.0
1,266,869	-				-1.2
1,266,876	-				-1.4
1,266,880	+				+0.7
1,266,901	-		GFF1239	0.12	-0.8
1,266,912	+		GFF1239	0.14	-0.9
1,266,913	-		GFF1239	0.14	-0.6
1,266,920	-		GFF1239	0.15	+0.7
1,266,927	+		GFF1239	0.16	-1.0
1,266,927	+		GFF1239	0.16	-2.1
1,266,935	-		GFF1239	0.17	-1.0
1,266,935	-		GFF1239	0.17	+0.4
1,266,935	-		GFF1239	0.17	-0.4