Strain Fitness in Sphingobium sp. HT1-2 around GFF1221

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,246,308	-		GFF1219	0.37	-0.5
1,246,308	-		GFF1219	0.37	+0.1
1,246,308	-		GFF1219	0.37	-1.1
1,246,308	-		GFF1219	0.37	-1.2
1,246,308	-		GFF1219	0.37	+0.4
1,246,336	+		GFF1219	0.41	-1.3
1,246,336	+		GFF1219	0.41	+0.9
1,246,336	+		GFF1219	0.41	+0.6
1,246,336	+		GFF1219	0.41	-0.7
1,246,336	+		GFF1219	0.41	+1.4
1,246,336	+		GFF1219	0.41	+0.4
1,246,336	+		GFF1219	0.41	-1.3
1,246,336	+		GFF1219	0.41	+1.2
1,246,336	+		GFF1219	0.41	+0.1
1,246,336	+		GFF1219	0.41	-0.1
1,246,336	+		GFF1219	0.41	-0.8
1,246,336	+		GFF1219	0.41	-0.9
1,246,336	+		GFF1219	0.41	-0.7
1,246,336	+		GFF1219	0.41	-1.8
1,246,336	+		GFF1219	0.41	-0.5
1,246,336	+		GFF1219	0.41	-2.6
1,246,336	+		GFF1219	0.41	-0.4
1,246,339	-		GFF1219	0.41	-1.7
1,246,341	+		GFF1219	0.41	-0.6
1,246,344	-		GFF1219	0.42	-1.3
1,246,344	-		GFF1219	0.42	+1.1
1,246,344	-		GFF1219	0.42	-1.4
1,246,344	-		GFF1219	0.42	-0.7
1,246,344	-		GFF1219	0.42	+0.6
1,246,344	-		GFF1219	0.42	-1.4
1,246,344	-		GFF1219	0.42	-0.4
1,246,344	-		GFF1219	0.42	-1.8
1,246,344	-		GFF1219	0.42	+0.7
1,246,344	-		GFF1219	0.42	-0.8
1,246,344	-		GFF1219	0.42	-0.1
1,246,344	-		GFF1219	0.42	-0.2
1,246,344	-		GFF1219	0.42	+0.4
1,246,344	-		GFF1219	0.42	-0.9
1,246,344	-		GFF1219	0.42	-0.6
1,246,344	-		GFF1219	0.42	-1.1
1,246,344	-		GFF1219	0.42	-0.9
1,246,344	-		GFF1219	0.42	-0.3
1,246,344	-		GFF1219	0.42	-0.3
1,246,344	-		GFF1219	0.42	-0.4
1,246,349	-		GFF1219	0.42	-0.1
1,246,378	+		GFF1219	0.46	+0.5
1,246,378	+		GFF1219	0.46	+0.3
1,246,383	+		GFF1219	0.47	+1.9
1,246,383	+		GFF1219	0.47	+0.1
1,246,383	+		GFF1219	0.47	-2.1
1,246,384	-		GFF1219	0.47	-0.3
1,246,386	-		GFF1219	0.47	-1.7
1,246,386	-		GFF1219	0.47	-0.1
1,246,391	+		GFF1219	0.48	-1.9
1,246,409	+		GFF1219	0.51	-0.5
1,246,420	+		GFF1219	0.52	-0.5
1,246,428	-		GFF1219	0.53	-0.7
1,246,436	-		GFF1219	0.54	-0.3
1,246,481	+		GFF1219	0.61	+0.1
1,246,491	+		GFF1219	0.62	-1.3
1,246,491	+		GFF1219	0.62	-0.3
1,246,499	-		GFF1219	0.63	-2.1
1,246,499	-		GFF1219	0.63	+0.4
1,246,502	+		GFF1219	0.64	-0.4
1,246,509	-		GFF1219	0.65	-1.2
1,246,516	+		GFF1219	0.66	-1.9
1,246,526	+		GFF1219	0.67	-1.3
1,246,526	+		GFF1219	0.67	+2.1
1,246,526	+		GFF1219	0.67	-0.6
1,246,534	-		GFF1219	0.68	+0.0
1,246,534	-		GFF1219	0.68	-0.9
1,246,534	-		GFF1219	0.68	-1.1
1,246,542	-		GFF1219	0.69	+0.2
1,246,549	+		GFF1219	0.70	-0.8
1,246,551	+		GFF1219	0.70	-0.1
1,246,557	-		GFF1219	0.71	+0.7
1,246,563	+		GFF1219	0.72	-1.3
1,246,571	-		GFF1219	0.73	-0.9
1,246,576	-		GFF1219	0.74	-0.2
1,246,589	+		GFF1219	0.76	-0.3
1,246,592	-		GFF1219	0.76	-2.2
1,246,594	+		GFF1219	0.76	-0.5
1,246,604	+		GFF1219	0.78	+0.1
1,246,607	-		GFF1219	0.78	-1.0
1,246,607	-		GFF1219	0.78	-0.9
1,246,607	-		GFF1219	0.78	-0.1
1,246,608	-		GFF1219	0.78	-0.6
1,246,616	+		GFF1219	0.79	-0.4
1,246,624	-		GFF1219	0.81	+0.7
1,246,624	-		GFF1219	0.81	-1.3
1,246,628	+		GFF1219	0.81	-0.8
1,246,648	+		GFF1219	0.84	-1.1
1,246,662	+		GFF1219	0.86	-1.6
1,246,667	+		GFF1219	0.87	-0.6
1,246,667	+		GFF1219	0.87	-0.6
1,246,667	+		GFF1219	0.87	-1.1
1,246,667	+		GFF1219	0.87	-1.5
1,246,667	+		GFF1219	0.87	-2.3
1,246,675	-		GFF1219	0.88	-0.6
1,246,682	+		GFF1219	0.89	+0.4
1,246,682	+		GFF1219	0.89	-2.4
1,246,690	-		GFF1219	0.90	-2.0
1,246,701	-				+0.3
1,246,719	+				-0.7
1,246,723	-				-1.1
1,246,733	-				-2.5
1,246,752	+				-0.2
1,246,759	-				-1.1
1,246,775	+				+1.0
1,246,795	-				+0.5
1,246,811	+		GFF1220	0.14	+0.1
1,246,833	+		GFF1220	0.20	-0.8
1,246,836	-		GFF1220	0.21	-1.3
1,246,855	-		GFF1220	0.26	-0.0
1,246,857	-		GFF1220	0.27	-1.8
1,246,865	-		GFF1220	0.29	-2.6
1,246,871	+		GFF1220	0.31	+1.2
1,246,879	-		GFF1220	0.33	-0.9
1,246,879	-		GFF1220	0.33	-0.9
1,246,879	-		GFF1220	0.33	+0.4
1,246,884	-		GFF1220	0.35	-0.6
1,246,893	+		GFF1220	0.37	-0.8
1,246,893	+		GFF1220	0.37	-0.6
1,246,893	+		GFF1220	0.37	+0.8
1,246,893	+		GFF1220	0.37	-1.3
1,246,901	-		GFF1220	0.40	-0.2
1,246,901	-		GFF1220	0.40	-0.8
1,246,903	+		GFF1220	0.40	+0.8
1,246,906	-		GFF1220	0.41	+0.7
1,246,907	-		GFF1220	0.41	-1.3
1,246,912	-		GFF1220	0.43	-0.6
1,246,917	-		GFF1220	0.44	-1.2
1,246,942	-		GFF1220	0.51	+1.4
1,246,943	+		GFF1220	0.52	-0.9
1,246,961	+		GFF1220	0.57	-1.3
1,246,961	+		GFF1220	0.57	-1.2
1,246,969	-		GFF1220	0.59	-0.3
1,247,002	-		GFF1220	0.69	-1.1
1,247,018	+		GFF1220	0.73	-0.3
1,247,028	-		GFF1220	0.76	-1.8
1,247,029	+		GFF1220	0.76	-0.2
1,247,037	-		GFF1220	0.79	-0.6
1,247,083	+				-0.7
1,247,089	-				-0.2
1,247,097	+				+0.3
1,247,112	+				+0.1
1,247,112	+				-1.0
1,247,112	+				-0.4
1,247,112	+				+0.7
1,247,112	+				+1.0
1,247,112	+				+1.4
1,247,112	+				+0.0
1,247,112	+				-1.8
1,247,113	-				-0.3
1,247,120	-				-0.5
1,247,120	-				+0.7
1,247,120	-				-0.5
1,247,120	-				-0.3
1,247,120	-				+1.3
1,247,120	-				+1.4
1,247,120	-				-2.2
1,247,120	-				-0.3
1,247,120	-				+0.6
1,247,120	-				-0.9
1,247,120	-				-1.3
1,247,120	-				-2.3
1,247,120	-				-1.0
1,247,120	-				-2.0
1,247,120	-				-0.3
1,247,120	-				-1.9
1,247,120	-				+0.4
1,247,120	-				-1.2
1,247,202	-				-0.8
1,247,346	+				-1.0
1,247,347	-				-0.4
1,247,347	-				-0.5
1,247,354	-				+0.2
1,247,381	+				+0.0
1,247,386	-				+0.6
1,247,432	+		GFF1221	0.11	+1.2
1,247,453	+		GFF1221	0.13	+0.6
1,247,453	+		GFF1221	0.13	+0.7
1,247,461	-		GFF1221	0.13	+0.1
1,247,464	+		GFF1221	0.14	+1.2
1,247,472	-		GFF1221	0.14	-1.4
1,247,472	-		GFF1221	0.14	-2.3
1,247,496	-		GFF1221	0.16	-2.4
1,247,514	-		GFF1221	0.18	-0.2
1,247,567	+		GFF1221	0.23	-0.2
1,247,570	-		GFF1221	0.23	-0.7
1,247,608	-		GFF1221	0.26	-0.5
1,247,636	-		GFF1221	0.28	-2.2
1,247,647	+		GFF1221	0.29	+0.3
1,247,647	+		GFF1221	0.29	-0.7
1,247,647	+		GFF1221	0.29	-1.1
1,247,647	+		GFF1221	0.29	-1.8
1,247,647	+		GFF1221	0.29	-0.1
1,247,655	-		GFF1221	0.30	+0.3
1,247,655	-		GFF1221	0.30	-1.0
1,247,655	-		GFF1221	0.30	-1.7
1,247,655	-		GFF1221	0.30	-0.8
1,247,655	-		GFF1221	0.30	+0.5
1,247,655	-		GFF1221	0.30	-1.1
1,247,716	+		GFF1221	0.35	-0.9
1,247,719	-		GFF1221	0.35	+0.3
1,247,724	-		GFF1221	0.36	-0.4
1,247,736	+		GFF1221	0.37	-0.2
1,247,739	-		GFF1221	0.37	-1.2
1,247,740	+		GFF1221	0.37	+0.5
1,247,745	+		GFF1221	0.38	+0.8
1,247,745	-		GFF1221	0.38	+0.7
1,247,753	-		GFF1221	0.38	+0.4
1,247,758	-		GFF1221	0.39	-0.3
1,247,804	+		GFF1221	0.43	-0.4
1,247,818	+		GFF1221	0.44	-1.2
1,247,820	+		GFF1221	0.44	-0.8
1,247,820	+		GFF1221	0.44	-1.4
1,247,820	+		GFF1221	0.44	+0.9
1,247,828	-		GFF1221	0.45	+0.7
1,247,828	-		GFF1221	0.45	-1.8
1,247,828	-		GFF1221	0.45	-0.9
1,247,828	-		GFF1221	0.45	-1.1
1,247,828	-		GFF1221	0.45	+1.7
1,247,828	-		GFF1221	0.45	-1.1
1,247,828	-		GFF1221	0.45	+0.5
1,247,828	-		GFF1221	0.45	+0.1
1,247,828	-		GFF1221	0.45	-2.7
1,247,840	+		GFF1221	0.46	+0.7
1,247,848	-		GFF1221	0.46	+0.1
1,247,869	-		GFF1221	0.48	-0.7
1,247,872	+		GFF1221	0.49	-0.3
1,247,872	+		GFF1221	0.49	+0.4
1,247,872	+		GFF1221	0.49	-0.8
1,247,873	+		GFF1221	0.49	-0.7
1,247,880	-		GFF1221	0.49	-1.2
1,247,890	+		GFF1221	0.50	-1.1
1,247,924	+		GFF1221	0.53	-1.5
1,247,940	+		GFF1221	0.54	-0.4
1,247,945	+		GFF1221	0.55	-0.6
1,247,948	-		GFF1221	0.55	+0.0
1,247,965	+		GFF1221	0.56	-1.1
1,248,011	+		GFF1221	0.60	-0.8
1,248,011	+		GFF1221	0.60	-0.9
1,248,018	+		GFF1221	0.61	-0.7
1,248,018	+		GFF1221	0.61	+0.2
1,248,036	-		GFF1221	0.62	-1.0
1,248,036	-		GFF1221	0.62	-0.8
1,248,057	+		GFF1221	0.64	-0.5
1,248,084	-		GFF1221	0.67	-0.7
1,248,086	+		GFF1221	0.67	-1.5
1,248,134	-		GFF1221	0.71	-2.5
1,248,149	-		GFF1221	0.72	+0.1
1,248,149	-		GFF1221	0.72	-1.1
1,248,153	-		GFF1221	0.72	-0.3
1,248,172	+		GFF1221	0.74	-2.2
1,248,180	-		GFF1221	0.75	+0.5
1,248,190	-		GFF1221	0.76	-1.6
1,248,190	-		GFF1221	0.76	-2.5
1,248,249	-		GFF1221	0.81	-1.1
1,248,255	+		GFF1221	0.81	-1.7
1,248,271	+		GFF1221	0.83	-1.6
1,248,278	+		GFF1221	0.83	-1.1
1,248,278	+		GFF1221	0.83	+0.8
1,248,278	+		GFF1221	0.83	+0.5
1,248,278	+		GFF1221	0.83	+0.0
1,248,278	+		GFF1221	0.83	+0.3
1,248,278	+		GFF1221	0.83	+0.7
1,248,278	+		GFF1221	0.83	-0.1
1,248,278	+		GFF1221	0.83	-0.5
1,248,286	-		GFF1221	0.84	-2.4
1,248,286	-		GFF1221	0.84	-0.8
1,248,286	-		GFF1221	0.84	+1.2
1,248,286	-		GFF1221	0.84	+0.9
1,248,295	+		GFF1221	0.85	-0.2
1,248,308	-		GFF1221	0.86	-0.4
1,248,333	+		GFF1221	0.88	+0.7
1,248,341	-		GFF1221	0.88	+1.3
1,248,343	+		GFF1221	0.89	+0.7
1,248,343	+		GFF1221	0.89	-1.1
1,248,343	+		GFF1221	0.89	+0.1
1,248,343	+		GFF1221	0.89	-0.4
1,248,343	+		GFF1221	0.89	+0.7
1,248,348	+		GFF1221	0.89	-1.1
1,248,351	-		GFF1221	0.89	-0.9
1,248,351	-		GFF1221	0.89	-0.8
1,248,361	+				-1.4
1,248,361	+				-1.0
1,248,397	+				-3.1
1,248,408	+				-0.7
1,248,418	+				+0.8
1,248,422	-				+0.8
1,248,442	-				-1.0
1,248,445	+				-0.5
1,248,445	+				-1.0
1,248,445	+				-0.9
1,248,455	+				-2.0
1,248,455	+				+0.8
1,248,455	+				-0.5
1,248,455	+				+0.4
1,248,463	+				-0.2
1,248,463	-				-1.4
1,248,463	-				-2.2
1,248,463	-				+0.1
1,248,463	-				+0.8
1,248,465	+				-1.1
1,248,477	+				-0.8
1,248,477	+				-0.6
1,248,483	-				-1.9
1,248,483	-				-0.5
1,248,528	+		GFF1222	0.17	-0.8
1,248,539	+		GFF1222	0.23	-0.7
1,248,539	+		GFF1222	0.23	+1.5
1,248,539	+		GFF1222	0.23	-1.5
1,248,547	-		GFF1222	0.27	-0.6
1,248,547	-		GFF1222	0.27	-1.1
1,248,547	-		GFF1222	0.27	+1.7
1,248,547	-		GFF1222	0.27	-2.2
1,248,547	-		GFF1222	0.27	-0.9
1,248,557	-		GFF1222	0.32	-0.6
1,248,569	-		GFF1222	0.39	-0.4
1,248,571	+		GFF1222	0.40	-1.6
1,248,571	+		GFF1222	0.40	-1.4
1,248,641	-		GFF1222	0.77	+0.1
1,248,651	-		GFF1222	0.83	-1.0
1,248,651	-		GFF1222	0.83	+0.4
1,248,651	-		GFF1222	0.83	+1.4
1,248,651	-		GFF1222	0.83	+0.1
1,248,654	+		GFF1222	0.84	+1.2
1,248,654	+		GFF1222	0.84	-0.5
1,248,690	+				-1.2
1,248,716	-				-0.4
1,248,782	+				+0.1
1,248,782	+				-0.5
1,248,790	-				+0.8
1,248,792	+				-0.7
1,248,802	+				-0.9
1,248,808	+				-0.3
1,248,808	+				+0.1
1,248,815	+				-1.0
1,248,840	+				+1.2
1,248,840	+				-1.1
1,248,840	+				-0.0
1,248,848	-				+0.4
1,248,848	-				-2.1
1,248,873	+				-0.5
1,248,886	+				-0.6
1,248,940	-		GFF1223	0.11	-0.6
1,248,940	-		GFF1223	0.11	+0.6
1,248,940	-		GFF1223	0.11	-1.2
1,248,951	+		GFF1223	0.11	+0.0
1,248,956	+		GFF1223	0.12	-0.6
1,248,964	+		GFF1223	0.12	-0.5
1,248,967	-		GFF1223	0.12	-1.2
1,248,972	+		GFF1223	0.13	+0.7
1,248,972	-		GFF1223	0.13	-1.0
1,248,982	+		GFF1223	0.13	-1.1
1,248,982	+		GFF1223	0.13	-0.2
1,248,982	+		GFF1223	0.13	-1.7
1,248,990	-		GFF1223	0.14	-0.7
1,248,990	-		GFF1223	0.14	-0.7
1,248,990	-		GFF1223	0.14	+0.3
1,248,992	+		GFF1223	0.14	-1.0
1,248,997	+		GFF1223	0.14	+0.7
1,249,000	-		GFF1223	0.15	-0.9
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