Strain Fitness in Sphingobium sp. HT1-2 around GFF1194

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,206,335	+		GFF1193	0.35	-0.4
1,206,344	+		GFF1193	0.36	-0.8
1,206,359	+		GFF1193	0.37	+1.1
1,206,359	+		GFF1193	0.37	+1.5
1,206,367	-		GFF1193	0.37	-0.6
1,206,374	+		GFF1193	0.38	-1.3
1,206,396	-		GFF1193	0.39	-1.8
1,206,407	+		GFF1193	0.40	-0.6
1,206,451	+		GFF1193	0.43	-0.9
1,206,451	+		GFF1193	0.43	-1.1
1,206,451	+		GFF1193	0.43	+0.5
1,206,451	+		GFF1193	0.43	-0.1
1,206,451	+		GFF1193	0.43	-0.4
1,206,451	+		GFF1193	0.43	-1.4
1,206,451	+		GFF1193	0.43	-0.7
1,206,459	-		GFF1193	0.44	-0.4
1,206,459	-		GFF1193	0.44	-0.7
1,206,459	-		GFF1193	0.44	-1.3
1,206,459	-		GFF1193	0.44	-1.6
1,206,490	+		GFF1193	0.46	-1.0
1,206,495	+		GFF1193	0.46	-0.3
1,206,503	-		GFF1193	0.47	-1.4
1,206,508	-		GFF1193	0.47	-0.5
1,206,508	-		GFF1193	0.47	-1.7
1,206,508	-		GFF1193	0.47	-1.6
1,206,508	-		GFF1193	0.47	-0.8
1,206,508	-		GFF1193	0.47	-1.0
1,206,511	+		GFF1193	0.47	-0.7
1,206,519	-		GFF1193	0.48	-1.1
1,206,553	+		GFF1193	0.50	+1.2
1,206,562	-		GFF1193	0.51	+0.5
1,206,600	+		GFF1193	0.53	-0.8
1,206,610	+		GFF1193	0.54	+0.3
1,206,624	+		GFF1193	0.55	-0.1
1,206,630	+		GFF1193	0.55	+1.1
1,206,630	+		GFF1193	0.55	-1.6
1,206,630	+		GFF1193	0.55	+1.8
1,206,630	+		GFF1193	0.55	+0.7
1,206,637	+		GFF1193	0.56	-0.2
1,206,638	-		GFF1193	0.56	+0.1
1,206,638	-		GFF1193	0.56	+0.0
1,206,638	-		GFF1193	0.56	-1.2
1,206,644	-		GFF1193	0.56	-1.6
1,206,645	+		GFF1193	0.56	-1.9
1,206,645	+		GFF1193	0.56	-0.9
1,206,645	+		GFF1193	0.56	-1.8
1,206,653	-		GFF1193	0.57	-1.2
1,206,653	-		GFF1193	0.57	-0.6
1,206,653	-		GFF1193	0.57	-1.7
1,206,654	-		GFF1193	0.57	+0.4
1,206,654	-		GFF1193	0.57	+0.8
1,206,655	+		GFF1193	0.57	-0.1
1,206,691	-		GFF1193	0.60	+0.6
1,206,718	-		GFF1193	0.61	-2.1
1,206,725	+		GFF1193	0.62	-1.6
1,206,725	+		GFF1193	0.62	+0.2
1,206,727	+		GFF1193	0.62	+0.7
1,206,728	-		GFF1193	0.62	-0.6
1,206,740	-		GFF1193	0.63	-0.3
1,206,775	+		GFF1193	0.65	+0.7
1,206,796	-		GFF1193	0.67	-0.8
1,206,810	+		GFF1193	0.68	-0.8
1,206,818	-		GFF1193	0.68	+0.9
1,206,828	-		GFF1193	0.69	+0.7
1,206,828	-		GFF1193	0.69	-0.4
1,206,837	-		GFF1193	0.70	-0.7
1,206,863	-		GFF1193	0.72	+1.0
1,206,872	+		GFF1193	0.72	-0.1
1,206,880	-		GFF1193	0.73	+0.0
1,206,880	-		GFF1193	0.73	+0.3
1,206,913	+		GFF1193	0.75	-1.7
1,206,913	+		GFF1193	0.75	-1.2
1,206,913	+		GFF1193	0.75	-2.3
1,206,916	-		GFF1193	0.75	-0.0
1,206,921	-		GFF1193	0.76	-0.3
1,206,924	-		GFF1193	0.76	-0.5
1,206,947	-		GFF1193	0.77	-0.1
1,206,947	-		GFF1193	0.77	-1.7
1,206,948	+		GFF1193	0.77	-0.3
1,206,951	+		GFF1193	0.78	-0.5
1,206,951	+		GFF1193	0.78	-1.7
1,206,951	+		GFF1193	0.78	-0.8
1,206,951	+		GFF1193	0.78	+0.8
1,206,953	+		GFF1193	0.78	+0.6
1,206,956	-		GFF1193	0.78	-0.3
1,206,958	+		GFF1193	0.78	+1.5
1,206,958	+		GFF1193	0.78	-0.5
1,206,958	+		GFF1193	0.78	-1.4
1,206,958	+		GFF1193	0.78	-1.0
1,206,958	+		GFF1193	0.78	-0.3
1,206,958	+		GFF1193	0.78	-0.3
1,206,958	+		GFF1193	0.78	-1.1
1,206,958	+		GFF1193	0.78	-2.1
1,206,958	+		GFF1193	0.78	-1.9
1,206,958	+		GFF1193	0.78	-1.1
1,206,958	+		GFF1193	0.78	-0.2
1,206,959	-		GFF1193	0.78	-1.8
1,206,961	-		GFF1193	0.78	+0.1
1,206,961	-		GFF1193	0.78	-1.3
1,206,966	-		GFF1193	0.79	-0.6
1,206,966	-		GFF1193	0.79	-1.4
1,206,966	-		GFF1193	0.79	+0.1
1,206,966	-		GFF1193	0.79	+0.9
1,206,966	-		GFF1193	0.79	-0.8
1,206,966	-		GFF1193	0.79	+0.8
1,206,966	-		GFF1193	0.79	+0.1
1,206,966	-		GFF1193	0.79	-2.0
1,206,966	-		GFF1193	0.79	-0.6
1,206,966	-		GFF1193	0.79	+0.7
1,206,966	-		GFF1193	0.79	-3.0
1,206,966	-		GFF1193	0.79	+0.4
1,206,970	+		GFF1193	0.79	-0.5
1,206,970	+		GFF1193	0.79	-0.8
1,206,971	-		GFF1193	0.79	-0.7
1,206,983	-		GFF1193	0.80	-1.7
1,206,988	-		GFF1193	0.80	-0.5
1,206,990	+		GFF1193	0.80	-0.3
1,206,995	+		GFF1193	0.81	-0.6
1,206,996	+		GFF1193	0.81	+0.1
1,206,996	+		GFF1193	0.81	-0.8
1,206,998	-		GFF1193	0.81	-1.7
1,206,998	-		GFF1193	0.81	+0.3
1,207,000	-		GFF1193	0.81	+0.6
1,207,004	-		GFF1193	0.81	-1.5
1,207,004	-		GFF1193	0.81	-1.7
1,207,015	+		GFF1193	0.82	-0.1
1,207,019	+		GFF1193	0.82	+0.6
1,207,023	-		GFF1193	0.83	-1.3
1,207,027	-		GFF1193	0.83	-0.3
1,207,029	+		GFF1193	0.83	-0.6
1,207,034	+		GFF1193	0.83	+0.6
1,207,034	+		GFF1193	0.83	+0.3
1,207,034	+		GFF1193	0.83	+0.5
1,207,034	+		GFF1193	0.83	-1.0
1,207,034	+		GFF1193	0.83	+0.1
1,207,034	+		GFF1193	0.83	-1.5
1,207,039	+		GFF1193	0.84	-2.9
1,207,039	+		GFF1193	0.84	+0.2
1,207,039	+		GFF1193	0.84	-0.4
1,207,039	+		GFF1193	0.84	-0.9
1,207,039	+		GFF1193	0.84	-1.5
1,207,039	+		GFF1193	0.84	-2.1
1,207,039	+		GFF1193	0.84	+0.3
1,207,039	+		GFF1193	0.84	+0.5
1,207,039	+		GFF1193	0.84	-0.4
1,207,042	-		GFF1193	0.84	-0.9
1,207,042	-		GFF1193	0.84	+1.0
1,207,042	-		GFF1193	0.84	-1.5
1,207,044	+		GFF1193	0.84	+0.2
1,207,044	+		GFF1193	0.84	+0.4
1,207,044	+		GFF1193	0.84	+0.3
1,207,044	+		GFF1193	0.84	-0.3
1,207,044	+		GFF1193	0.84	-0.8
1,207,044	+		GFF1193	0.84	-1.2
1,207,044	+		GFF1193	0.84	-1.5
1,207,044	+		GFF1193	0.84	+0.6
1,207,044	+		GFF1193	0.84	+0.1
1,207,047	-		GFF1193	0.84	-0.3
1,207,047	-		GFF1193	0.84	-0.1
1,207,047	-		GFF1193	0.84	-0.8
1,207,047	-		GFF1193	0.84	+0.5
1,207,047	-		GFF1193	0.84	-0.9
1,207,047	-		GFF1193	0.84	+0.6
1,207,052	-		GFF1193	0.85	+0.6
1,207,052	-		GFF1193	0.85	-1.2
1,207,052	-		GFF1193	0.85	-0.5
1,207,052	-		GFF1193	0.85	+0.1
1,207,052	-		GFF1193	0.85	+0.1
1,207,059	+		GFF1193	0.85	+0.5
1,207,059	+		GFF1193	0.85	-0.3
1,207,059	+		GFF1193	0.85	+0.4
1,207,059	+		GFF1193	0.85	-1.6
1,207,067	-		GFF1193	0.86	-1.8
1,207,067	-		GFF1193	0.86	-1.2
1,207,067	-		GFF1193	0.86	-2.1
1,207,088	-		GFF1193	0.87	-2.3
1,207,094	-		GFF1193	0.87	-0.5
1,207,094	-		GFF1193	0.87	-1.3
1,207,094	-		GFF1193	0.87	-1.9
1,207,115	-		GFF1193	0.89	+0.7
1,207,137	+				+0.2
1,207,186	+				-0.5
1,207,186	+				-1.6
1,207,186	+				-0.4
1,207,198	+				-0.3
1,207,199	-				-1.1
1,207,199	-				+0.5
1,207,199	-				-0.2
1,207,214	-				-0.8
1,207,218	-				+0.6
1,207,218	-				-2.2
1,207,223	+				+1.2
1,207,229	+				-2.5
1,207,234	+				-1.2
1,207,237	-				-1.6
1,207,243	+				-0.9
1,207,292	+				-0.4
1,207,292	+				-0.1
1,207,300	-				+0.2
1,207,311	-				-0.6
1,207,317	+				-0.6
1,207,321	-				-0.8
1,207,325	-				+0.1
1,207,336	+				-1.1
1,207,341	+				+0.7
1,207,344	-				+0.2
1,207,349	-				-0.5
1,207,349	-				+0.6
1,207,349	-				-0.7
1,207,357	-				-0.6
1,207,387	-				+0.7
1,207,398	+		GFF1194	0.11	+1.3
1,207,406	-		GFF1194	0.12	-0.6
1,207,406	-		GFF1194	0.12	-0.5
1,207,409	-		GFF1194	0.13	-1.6
1,207,478	+		GFF1194	0.23	+0.3
1,207,513	+		GFF1194	0.29	+1.4
1,207,513	+		GFF1194	0.29	+0.5
1,207,513	+		GFF1194	0.29	-1.3
1,207,521	-		GFF1194	0.30	-0.6
1,207,547	+		GFF1194	0.34	+0.6
1,207,571	-		GFF1194	0.38	-2.1
1,207,582	-		GFF1194	0.39	-0.2
1,207,595	-		GFF1194	0.41	-0.9
1,207,603	-		GFF1194	0.43	+0.9
1,207,623	+		GFF1194	0.46	-0.4
1,207,624	+		GFF1194	0.46	-0.4
1,207,628	+		GFF1194	0.46	-0.5
1,207,633	+		GFF1194	0.47	+0.3
1,207,636	-		GFF1194	0.48	-0.3
1,207,636	-		GFF1194	0.48	-0.2
1,207,636	-		GFF1194	0.48	-0.1
1,207,636	-		GFF1194	0.48	-1.1
1,207,636	-		GFF1194	0.48	+0.1
1,207,636	-		GFF1194	0.48	-0.7
1,207,641	-		GFF1194	0.48	+0.1
1,207,645	+		GFF1194	0.49	+0.5
1,207,672	-		GFF1194	0.53	-0.3
1,207,715	+		GFF1194	0.60	-0.3
1,207,715	+		GFF1194	0.60	-1.9
1,207,723	-		GFF1194	0.61	-0.3
1,207,728	+		GFF1194	0.62	-0.8
1,207,730	+		GFF1194	0.62	-1.1
1,207,737	-		GFF1194	0.63	-0.4
1,207,737	-		GFF1194	0.63	-0.7
1,207,737	-		GFF1194	0.63	-1.0
1,207,754	+		GFF1194	0.66	-1.4
1,207,754	+		GFF1194	0.66	+1.6
1,207,800	-		GFF1194	0.73	-1.3
1,207,805	-		GFF1194	0.74	-1.8
1,207,810	-		GFF1194	0.74	-0.4
1,207,816	+		GFF1194	0.75	+0.9
1,207,816	+		GFF1194	0.75	+0.7
1,207,824	-		GFF1194	0.76	-0.0
1,207,824	-		GFF1194	0.76	-0.9
1,207,826	+		GFF1194	0.77	-0.1
1,207,829	-		GFF1194	0.77	-0.7
1,207,829	-		GFF1194	0.77	-1.1
1,207,862	-		GFF1194	0.82	-0.8
1,207,867	-		GFF1194	0.83	-1.7
1,207,874	-		GFF1194	0.84	-0.1
1,207,931	-				-0.8
1,207,954	-				+0.6
1,207,955	+				-1.1
1,207,963	-				-0.2
1,207,963	-				+0.5
1,207,963	-				-0.9
1,207,963	-				-1.0
1,207,963	-				-0.8
1,207,963	-				+0.6
1,207,963	-				+0.4
1,207,963	-				-1.1
1,207,970	+				+0.7
1,207,972	-				-1.6
1,207,984	+				+0.8
1,207,984	+				+0.2
1,207,984	+				-0.1
1,207,984	+				+1.1
1,207,984	+				-0.5
1,207,984	+				-1.0
1,207,984	+				+0.9
1,207,992	-				-1.1
1,207,992	-				-1.3
1,207,992	-				-0.5
1,207,992	-				-0.3
1,207,992	-				-1.4
1,207,992	-				-0.4
1,207,992	-				-0.9
1,208,035	-				-1.3
1,208,069	+				-1.3
1,208,081	+				-0.6
1,208,086	+				-2.1
1,208,086	+				-1.5
1,208,086	+				+0.4
1,208,089	-				-1.7
1,208,089	-				-0.7
1,208,094	-				-0.6
1,208,104	+				-0.2
1,208,122	-				-0.6
1,208,124	-				-2.3
1,208,143	-				-1.1
1,208,189	+		GFF1195	0.13	+0.2
1,208,189	+		GFF1195	0.13	-1.3
1,208,218	+		GFF1195	0.15	-0.6
1,208,225	-		GFF1195	0.16	-0.9
1,208,249	+		GFF1195	0.19	-2.1
1,208,249	+		GFF1195	0.19	-0.8
1,208,257	-		GFF1195	0.19	+0.7
1,208,257	-		GFF1195	0.19	-0.3
1,208,286	-		GFF1195	0.22	+1.8
1,208,317	-		GFF1195	0.25	-1.7
1,208,333	+		GFF1195	0.27	-0.3
1,208,333	+		GFF1195	0.27	-1.2
1,208,333	+		GFF1195	0.27	-0.1
1,208,341	-		GFF1195	0.28	-1.5
1,208,341	-		GFF1195	0.28	-0.4
1,208,369	+		GFF1195	0.30	-1.3
1,208,369	+		GFF1195	0.30	-0.5
1,208,369	+		GFF1195	0.30	-0.5
1,208,369	+		GFF1195	0.30	-0.4
1,208,369	+		GFF1195	0.30	+1.2
1,208,369	+		GFF1195	0.30	-0.7
1,208,377	-		GFF1195	0.31	+0.2
1,208,377	-		GFF1195	0.31	-0.8
1,208,377	-		GFF1195	0.31	-0.6
1,208,377	-		GFF1195	0.31	-1.0
1,208,377	-		GFF1195	0.31	-1.3
1,208,377	-		GFF1195	0.31	-1.6
1,208,377	-		GFF1195	0.31	-0.4
1,208,377	-		GFF1195	0.31	-0.2
1,208,377	-		GFF1195	0.31	+0.0
1,208,377	-		GFF1195	0.31	+0.6
1,208,377	-		GFF1195	0.31	-1.3
1,208,384	+		GFF1195	0.32	+1.2
1,208,384	+		GFF1195	0.32	-0.5
1,208,391	+		GFF1195	0.33	-0.9
1,208,391	+		GFF1195	0.33	+0.2
1,208,391	+		GFF1195	0.33	-2.0
1,208,391	+		GFF1195	0.33	-1.3
1,208,391	+		GFF1195	0.33	-0.4
1,208,391	+		GFF1195	0.33	+0.8
1,208,391	+		GFF1195	0.33	-0.8
1,208,391	+		GFF1195	0.33	-1.5
1,208,391	+		GFF1195	0.33	+0.4
1,208,391	+		GFF1195	0.33	+1.0
1,208,391	+		GFF1195	0.33	+0.3
1,208,391	+		GFF1195	0.33	-0.4
1,208,392	-		GFF1195	0.33	+0.6
1,208,392	-		GFF1195	0.33	-0.9
1,208,397	+		GFF1195	0.33	+0.4
1,208,399	-		GFF1195	0.33	+0.1
1,208,399	-		GFF1195	0.33	-0.7
1,208,399	-		GFF1195	0.33	-0.8
1,208,399	-		GFF1195	0.33	-0.3
1,208,399	-		GFF1195	0.33	+0.3
1,208,399	-		GFF1195	0.33	+1.4
1,208,399	-		GFF1195	0.33	+1.1
1,208,399	-		GFF1195	0.33	-0.5
1,208,399	-		GFF1195	0.33	+0.8
1,208,399	-		GFF1195	0.33	-0.4
1,208,399	-		GFF1195	0.33	-0.2
1,208,399	-		GFF1195	0.33	+0.3
1,208,399	-		GFF1195	0.33	+0.3
1,208,406	+		GFF1195	0.34	+0.7
1,208,414	-		GFF1195	0.35	+0.6
1,208,414	-		GFF1195	0.35	-0.5
1,208,414	-		GFF1195	0.35	+0.4
1,208,439	+		GFF1195	0.37	-2.4
1,208,439	+		GFF1195	0.37	-1.3
1,208,478	+		GFF1195	0.41	+0.6
1,208,486	-		GFF1195	0.42	-0.3
1,208,503	-		GFF1195	0.44	-1.4
1,208,503	-		GFF1195	0.44	+0.0
1,208,519	-		GFF1195	0.45	-2.2
1,208,566	-		GFF1195	0.50	+0.6
1,208,568	+		GFF1195	0.50	-0.6
1,208,568	+		GFF1195	0.50	+0.6
1,208,568	+		GFF1195	0.50	-1.2
1,208,568	+		GFF1195	0.50	-1.6
1,208,568	+		GFF1195	0.50	+0.5
1,208,568	-		GFF1195	0.50	-0.2
1,208,576	-		GFF1195	0.51	-1.6
1,208,578	+		GFF1195	0.51	-1.1
1,208,581	-		GFF1195	0.51	-1.3
1,208,581	-		GFF1195	0.51	-0.7
1,208,583	+		GFF1195	0.52	-1.7
1,208,583	+		GFF1195	0.52	-1.2
1,208,583	+		GFF1195	0.52	-1.3
1,208,586	-		GFF1195	0.52	+0.4
1,208,590	+		GFF1195	0.52	-1.3
1,208,591	-		GFF1195	0.52	-2.2
1,208,611	+		GFF1195	0.54	+1.3
1,208,629	+		GFF1195	0.56	-2.1
1,208,629	+		GFF1195	0.56	+0.0
1,208,629	+		GFF1195	0.56	-1.3
1,208,629	+		GFF1195	0.56	-1.7
1,208,637	-		GFF1195	0.57	-1.6
1,208,637	-		GFF1195	0.57	-0.6
1,208,701	+		GFF1195	0.63	-0.6
1,208,709	-		GFF1195	0.64	-0.2
1,208,724	+		GFF1195	0.66	-0.4
1,208,742	+		GFF1195	0.67	-1.1
1,208,742	+		GFF1195	0.67	-0.5
1,208,743	+		GFF1195	0.68	-0.4
1,208,751	-		GFF1195	0.68	-2.2
1,208,805	-		GFF1195	0.74	-0.6
1,208,805	-		GFF1195	0.74	-2.0
1,208,845	+		GFF1195	0.78	-0.6
1,208,847	+		GFF1195	0.78	-1.1
1,208,847	-		GFF1195	0.78	-0.3
1,208,847	-		GFF1195	0.78	-0.4
1,208,855	-		GFF1195	0.79	-0.8
1,208,883	-		GFF1195	0.81	-1.1
1,208,886	+		GFF1195	0.82	+0.3
1,208,886	+		GFF1195	0.82	-1.9
1,208,886	+		GFF1195	0.82	-0.9
1,208,886	+		GFF1195	0.82	-0.5
1,208,886	+		GFF1195	0.82	-1.3
1,208,894	-		GFF1195	0.83	-0.7
1,208,901	+		GFF1195	0.83	-0.2
1,208,901	+		GFF1195	0.83	-0.8
1,208,909	-		GFF1195	0.84	+1.1
1,208,909	-		GFF1195	0.84	+0.7
1,208,909	-		GFF1195	0.84	+0.4
1,208,913	+		GFF1195	0.84	-1.1
1,208,916	-		GFF1195	0.85	-2.1
1,208,917	+		GFF1195	0.85	+0.3
1,208,917	+		GFF1195	0.85	+2.2
1,208,925	-		GFF1195	0.86	-2.0
1,208,947	+		GFF1195	0.88	+0.3
1,208,956	+		GFF1195	0.89	-0.3
1,208,964	-		GFF1195	0.89	-0.9
1,208,975	+				-1.5
1,208,975	+				-0.8
1,208,975	+				+0.0