Strain Fitness in Sphingobium sp. HT1-2 around GFF1140

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,143,813	+		GFF1139	0.51	-1.4
1,143,826	+		GFF1139	0.51	+0.8
1,143,826	+		GFF1139	0.51	+0.8
1,143,826	+		GFF1139	0.51	-0.1
1,143,826	+		GFF1139	0.51	+1.0
1,143,834	-		GFF1139	0.52	-0.4
1,143,857	+		GFF1139	0.53	+1.5
1,143,862	+		GFF1139	0.54	-1.2
1,143,894	+		GFF1139	0.55	-0.5
1,143,898	+		GFF1139	0.56	-0.7
1,143,907	+		GFF1139	0.56	-1.6
1,143,907	+		GFF1139	0.56	-1.2
1,143,907	+		GFF1139	0.56	-1.1
1,143,912	+		GFF1139	0.56	-1.8
1,143,912	+		GFF1139	0.56	+0.1
1,143,915	-		GFF1139	0.57	-1.7
1,143,917	+		GFF1139	0.57	-0.2
1,143,917	+		GFF1139	0.57	-0.9
1,143,917	+		GFF1139	0.57	-2.1
1,143,917	+		GFF1139	0.57	-0.3
1,143,917	+		GFF1139	0.57	+1.8
1,143,917	+		GFF1139	0.57	-2.5
1,143,920	-		GFF1139	0.57	-1.4
1,143,920	-		GFF1139	0.57	+0.9
1,143,920	-		GFF1139	0.57	-2.1
1,143,920	-		GFF1139	0.57	-0.5
1,143,922	+		GFF1139	0.57	+0.7
1,143,925	-		GFF1139	0.57	-1.4
1,143,925	-		GFF1139	0.57	-0.6
1,143,925	-		GFF1139	0.57	+0.7
1,143,972	-		GFF1139	0.60	-2.7
1,143,991	+		GFF1139	0.61	-0.1
1,143,994	-		GFF1139	0.61	-0.6
1,143,998	+		GFF1139	0.61	+0.1
1,143,999	-		GFF1139	0.61	-1.3
1,144,038	+		GFF1139	0.64	-1.6
1,144,072	+		GFF1139	0.66	+0.8
1,144,072	+		GFF1139	0.66	-0.6
1,144,072	+		GFF1139	0.66	-0.5
1,144,072	+		GFF1139	0.66	+0.6
1,144,080	-		GFF1139	0.66	+0.2
1,144,080	-		GFF1139	0.66	-0.6
1,144,096	+		GFF1139	0.67	-1.7
1,144,099	-		GFF1139	0.67	-1.5
1,144,099	-		GFF1139	0.67	+0.5
1,144,099	-		GFF1139	0.67	-0.7
1,144,099	-		GFF1139	0.67	-0.3
1,144,099	-		GFF1139	0.67	+1.0
1,144,153	+		GFF1139	0.70	+0.4
1,144,161	+		GFF1139	0.71	-0.7
1,144,161	+		GFF1139	0.71	-0.0
1,144,167	+		GFF1139	0.71	-1.3
1,144,169	-		GFF1139	0.71	-0.4
1,144,169	-		GFF1139	0.71	-0.1
1,144,169	-		GFF1139	0.71	-0.4
1,144,169	-		GFF1139	0.71	+0.4
1,144,170	-		GFF1139	0.71	-0.9
1,144,175	-		GFF1139	0.71	+0.5
1,144,240	-		GFF1139	0.75	-0.1
1,144,264	+		GFF1139	0.77	-0.6
1,144,265	+		GFF1139	0.77	-0.1
1,144,274	+		GFF1139	0.77	-0.8
1,144,302	+		GFF1139	0.79	+0.1
1,144,337	+		GFF1139	0.81	-0.2
1,144,337	+		GFF1139	0.81	+0.7
1,144,342	+		GFF1139	0.81	-0.2
1,144,342	+		GFF1139	0.81	-1.9
1,144,345	-		GFF1139	0.81	-1.0
1,144,349	+		GFF1139	0.81	+0.4
1,144,349	+		GFF1139	0.81	-0.4
1,144,349	+		GFF1139	0.81	-1.9
1,144,350	-		GFF1139	0.82	-0.7
1,144,350	-		GFF1139	0.82	+0.2
1,144,395	-		GFF1139	0.84	-1.3
1,144,403	-		GFF1139	0.85	-0.3
1,144,420	-		GFF1139	0.86	+0.3
1,144,427	+		GFF1139	0.86	-0.7
1,144,427	+		GFF1139	0.86	-0.2
1,144,427	+		GFF1139	0.86	-0.3
1,144,427	+		GFF1139	0.86	-0.6
1,144,427	+		GFF1139	0.86	-1.2
1,144,435	-		GFF1139	0.86	-0.2
1,144,435	-		GFF1139	0.86	+0.5
1,144,435	-		GFF1139	0.86	-2.1
1,144,437	+		GFF1139	0.86	-0.9
1,144,437	+		GFF1139	0.86	-0.6
1,144,445	-		GFF1139	0.87	+1.0
1,144,445	-		GFF1139	0.87	-1.2
1,144,452	+		GFF1139	0.87	-0.7
1,144,453	-		GFF1139	0.87	+0.7
1,144,464	-		GFF1139	0.88	+0.7
1,144,477	+		GFF1139	0.89	+0.7
1,144,538	+				-0.0
1,144,548	-				-0.3
1,144,549	+				+0.3
1,144,552	+				-1.6
1,144,552	+				+1.0
1,144,595	-				+0.1
1,144,603	+				-3.2
1,144,603	+				+0.7
1,144,606	-				-0.0
1,144,611	-				-0.9
1,144,613	+				-0.9
1,144,613	+				+0.3
1,144,621	-				+1.5
1,144,626	-				-1.6
1,144,626	-				-1.5
1,144,636	+				-0.0
1,144,642	+				-0.4
1,144,660	-				-0.7
1,144,664	+				-1.5
1,144,675	+				+1.7
1,144,675	-				-0.6
1,144,675	-				+0.2
1,144,675	-				-0.6
1,144,675	-				-0.7
1,144,685	-				-1.9
1,144,705	-				-0.6
1,144,768	-				-1.1
1,144,788	-				-1.3
1,144,794	+				-0.7
1,144,809	+				-1.9
1,144,810	+				-0.2
1,144,810	+				+0.5
1,144,818	-				-2.4
1,144,818	-				+0.6
1,144,818	-				-0.1
1,144,834	-				-0.8
1,144,884	+				-1.6
1,144,892	+		GFF1140	0.11	-0.7
1,144,892	-		GFF1140	0.11	-0.0
1,144,934	+		GFF1140	0.16	-1.2
1,144,941	+		GFF1140	0.17	-0.9
1,144,949	-		GFF1140	0.18	-1.6
1,144,949	-		GFF1140	0.18	-0.8
1,144,949	-		GFF1140	0.18	-1.3
1,144,977	+		GFF1140	0.22	-0.2
1,144,977	+		GFF1140	0.22	+0.3
1,144,984	+		GFF1140	0.23	+1.0
1,144,985	-		GFF1140	0.23	-0.4
1,144,985	-		GFF1140	0.23	+0.7
1,144,999	+		GFF1140	0.25	-1.0
1,145,025	-		GFF1140	0.28	+0.3
1,145,029	-		GFF1140	0.29	+0.4
1,145,055	-		GFF1140	0.32	+0.2
1,145,072	-		GFF1140	0.34	-0.6
1,145,078	-		GFF1140	0.35	-1.2
1,145,080	-		GFF1140	0.35	-0.5
1,145,080	-		GFF1140	0.35	-0.4
1,145,098	+		GFF1140	0.38	-1.9
1,145,109	+		GFF1140	0.39	-2.2
1,145,148	+		GFF1140	0.44	-0.1
1,145,148	+		GFF1140	0.44	+0.7
1,145,167	+		GFF1140	0.47	-0.0
1,145,174	-		GFF1140	0.47	+0.7
1,145,174	-		GFF1140	0.47	-1.9
1,145,174	-		GFF1140	0.47	-1.5
1,145,175	+		GFF1140	0.48	+0.3
1,145,175	-		GFF1140	0.48	-0.6
1,145,194	+		GFF1140	0.50	-1.3
1,145,209	-		GFF1140	0.52	-0.5
1,145,242	-		GFF1140	0.56	+1.2
1,145,285	+		GFF1140	0.62	-0.9
1,145,285	+		GFF1140	0.62	+1.0
1,145,285	+		GFF1140	0.62	-0.6
1,145,285	+		GFF1140	0.62	-1.8
1,145,290	+		GFF1140	0.63	+0.1
1,145,293	-		GFF1140	0.63	-0.5
1,145,293	-		GFF1140	0.63	-0.2
1,145,293	-		GFF1140	0.63	-0.8
1,145,293	-		GFF1140	0.63	-0.3
1,145,293	-		GFF1140	0.63	-0.9
1,145,293	-		GFF1140	0.63	+1.0
1,145,294	-		GFF1140	0.63	-1.2
1,145,295	+		GFF1140	0.63	-0.3
1,145,317	+		GFF1140	0.66	-2.0
1,145,331	-		GFF1140	0.68	-1.5
1,145,341	-		GFF1140	0.69	-0.2
1,145,355	-		GFF1140	0.71	+0.5
1,145,360	+		GFF1140	0.72	-1.2
1,145,361	+		GFF1140	0.72	+0.3
1,145,361	+		GFF1140	0.72	+1.0
1,145,386	-		GFF1140	0.75	-1.2
1,145,405	+		GFF1140	0.77	-0.2
1,145,413	-		GFF1140	0.78	+0.1
1,145,423	-		GFF1140	0.80	-0.6
1,145,539	+				+0.4
1,145,585	-				+0.9
1,145,608	-		GFF1141	0.11	+0.4
1,145,610	+		GFF1141	0.12	-0.5
1,145,610	+		GFF1141	0.12	-1.2
1,145,620	+		GFF1141	0.14	-0.9
1,145,620	+		GFF1141	0.14	+0.7
1,145,622	+		GFF1141	0.14	-0.8
1,145,627	+		GFF1141	0.15	-0.4
1,145,627	+		GFF1141	0.15	+0.1
1,145,628	-		GFF1141	0.15	+1.4
1,145,630	-		GFF1141	0.16	+1.0
1,145,635	-		GFF1141	0.17	-1.5
1,145,635	-		GFF1141	0.17	+0.8
1,145,635	-		GFF1141	0.17	-0.4
1,145,644	+		GFF1141	0.18	+0.4
1,145,687	+		GFF1141	0.27	+0.6
1,145,687	+		GFF1141	0.27	-0.2
1,145,687	+		GFF1141	0.27	-0.5
1,145,687	+		GFF1141	0.27	+0.4
1,145,687	+		GFF1141	0.27	+0.4
1,145,687	+		GFF1141	0.27	+1.3
1,145,687	+		GFF1141	0.27	-1.0
1,145,687	+		GFF1141	0.27	+0.5
1,145,695	-		GFF1141	0.29	-1.5
1,145,695	-		GFF1141	0.29	-1.7
1,145,695	-		GFF1141	0.29	-1.8
1,145,695	-		GFF1141	0.29	-1.3
1,145,695	-		GFF1141	0.29	+0.2
1,145,695	-		GFF1141	0.29	+0.7
1,145,695	-		GFF1141	0.29	-0.2
1,145,695	-		GFF1141	0.29	+1.0
1,145,695	-		GFF1141	0.29	-1.2
1,145,695	-		GFF1141	0.29	+0.7
1,145,709	+		GFF1141	0.31	-0.9
1,145,717	-		GFF1141	0.33	+1.5
1,145,736	+		GFF1141	0.37	-0.8
1,145,744	-		GFF1141	0.38	+0.8
1,145,748	+		GFF1141	0.39	-0.0
1,145,756	-		GFF1141	0.41	+0.5
1,145,773	+		GFF1141	0.44	-1.0
1,145,781	-		GFF1141	0.46	+0.5
1,145,794	-		GFF1141	0.48	-1.5
1,145,805	+		GFF1141	0.50	+1.5
1,145,814	-		GFF1141	0.52	-0.0
1,145,817	-		GFF1141	0.53	-0.0
1,145,817	-		GFF1141	0.53	-0.8
1,145,843	+		GFF1141	0.58	-1.2
1,145,853	+		GFF1141	0.60	-0.1
1,145,861	-		GFF1141	0.62	-1.2
1,145,870	+		GFF1141	0.63	-0.8
1,145,870	+		GFF1141	0.63	-1.7
1,145,871	+		GFF1141	0.63	-0.1
1,145,883	-		GFF1141	0.66	-0.2
1,145,887	+		GFF1141	0.67	+0.2
1,145,895	-		GFF1141	0.68	-1.4
1,145,939	+		GFF1141	0.77	-2.2
1,145,942	-		GFF1141	0.78	-0.2
1,145,944	+		GFF1141	0.78	-1.0
1,145,952	+		GFF1141	0.80	+0.2
1,145,982	-		GFF1141	0.86	+0.2
1,145,982	-		GFF1141	0.86	-0.4
1,145,997	-		GFF1141	0.88	+0.7
1,146,001	-		GFF1141	0.89	-0.0
1,146,029	+				-0.7
1,146,029	+				-0.7
1,146,041	+				-1.3
1,146,068	+				-0.3
1,146,068	+				-1.2
1,146,072	+				-0.1
1,146,072	+				-0.3
1,146,072	+				-0.6
1,146,072	+				+0.6
1,146,080	-				-1.7
1,146,080	-				-0.0
1,146,095	-				+0.2
1,146,106	+				+0.2
1,146,131	+				-1.8
1,146,139	-				-1.7
1,146,149	-				-0.3
1,146,149	-				-0.4
1,146,188	+				-0.4
1,146,191	+				-1.2
1,146,198	-				+0.6
1,146,204	-				+0.9
1,146,218	-				+0.4
1,146,232	+				-0.1
1,146,240	-				+0.5
1,146,240	-				-1.0
1,146,242	-				-1.0
1,146,286	+				+0.1
1,146,286	+				+0.5
1,146,286	+				+0.4
1,146,286	+				+0.2
1,146,286	+				+0.2
1,146,286	+				-0.4
1,146,286	+				-0.8
1,146,291	+				-0.9
1,146,294	-				-1.7
1,146,294	-				-0.6
1,146,294	-				+0.6
1,146,294	-				+0.4
1,146,294	-				-0.4
1,146,299	-				+0.1
1,146,301	+				+0.7
1,146,325	+		GFF1142	0.11	-0.7
1,146,340	+		GFF1142	0.12	+0.7
1,146,345	+		GFF1142	0.12	-0.4
1,146,348	+		GFF1142	0.13	+0.7
1,146,361	+		GFF1142	0.14	+0.8
1,146,374	+		GFF1142	0.15	-0.6
1,146,374	+		GFF1142	0.15	-0.8
1,146,415	-		GFF1142	0.18	-1.4
1,146,422	-		GFF1142	0.18	+1.0
1,146,432	-		GFF1142	0.19	-0.0
1,146,438	-		GFF1142	0.19	+0.4
1,146,440	-		GFF1142	0.20	-1.4
1,146,467	+		GFF1142	0.22	-0.8
1,146,475	-		GFF1142	0.22	-0.9
1,146,475	-		GFF1142	0.22	-0.3
1,146,481	-		GFF1142	0.23	+1.2
1,146,484	+		GFF1142	0.23	-0.6
1,146,484	+		GFF1142	0.23	-1.0
1,146,535	+		GFF1142	0.27	+0.4
1,146,536	+		GFF1142	0.27	+0.0
1,146,541	+		GFF1142	0.27	+0.2
1,146,551	-		GFF1142	0.28	-1.2
1,146,551	-		GFF1142	0.28	+2.0
1,146,578	+		GFF1142	0.30	-1.4