Strain Fitness in Sphingobium sp. HT1-2 around GFF1053

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,059,157	+				+1.8
1,059,157	+				+1.1
1,059,157	+				-0.4
1,059,307	-				-0.5
1,059,316	-				-1.5
1,059,320	+				-1.0
1,059,323	-				-1.2
1,059,323	-				-1.1
1,059,336	+				-0.5
1,059,339	+				-1.4
1,059,341	+				-1.8
1,059,344	-				-0.4
1,059,344	-				-0.7
1,059,346	+				-0.9
1,059,349	-				-0.5
1,059,363	+		GFF1053	0.10	-0.3
1,059,363	+		GFF1053	0.10	-1.4
1,059,368	+		GFF1053	0.10	-1.7
1,059,371	-		GFF1053	0.11	-0.8
1,059,379	+		GFF1053	0.11	-0.3
1,059,394	+		GFF1053	0.12	-1.4
1,059,394	+		GFF1053	0.12	-1.7
1,059,402	-		GFF1053	0.13	-0.5
1,059,402	-		GFF1053	0.13	-0.3
1,059,407	-		GFF1053	0.13	-1.2
1,059,429	+		GFF1053	0.15	-0.4
1,059,437	-		GFF1053	0.16	-1.8
1,059,437	-		GFF1053	0.16	-0.4
1,059,437	-		GFF1053	0.16	-1.2
1,059,456	+		GFF1053	0.17	-0.3
1,059,485	+		GFF1053	0.20	-1.7
1,059,493	-		GFF1053	0.20	-1.3
1,059,493	-		GFF1053	0.20	-2.4
1,059,499	-		GFF1053	0.21	-0.8
1,059,501	+		GFF1053	0.21	-1.9
1,059,501	+		GFF1053	0.21	-0.6
1,059,536	+		GFF1053	0.24	-1.5
1,059,536	+		GFF1053	0.24	-1.6
1,059,536	+		GFF1053	0.24	-1.2
1,059,536	+		GFF1053	0.24	-0.1
1,059,537	+		GFF1053	0.24	-1.3
1,059,537	+		GFF1053	0.24	-1.2
1,059,537	+		GFF1053	0.24	-1.2
1,059,544	-		GFF1053	0.24	-1.4
1,059,544	-		GFF1053	0.24	-0.8
1,059,544	-		GFF1053	0.24	-0.6
1,059,544	-		GFF1053	0.24	-0.4
1,059,544	-		GFF1053	0.24	-2.5
1,059,545	-		GFF1053	0.24	-1.3
1,059,545	-		GFF1053	0.24	-3.2
1,059,545	-		GFF1053	0.24	-1.9
1,059,555	+		GFF1053	0.25	-1.3
1,059,584	-		GFF1053	0.27	-0.8
1,059,589	+		GFF1053	0.28	-0.5
1,059,597	-		GFF1053	0.28	-1.1
1,059,603	+		GFF1053	0.29	-1.7
1,059,605	+		GFF1053	0.29	-0.4
1,059,606	-		GFF1053	0.29	-1.1
1,059,612	+		GFF1053	0.29	-1.1
1,059,638	+		GFF1053	0.32	-1.6
1,059,657	+		GFF1053	0.33	-1.0
1,059,665	-		GFF1053	0.34	-0.4
1,059,665	-		GFF1053	0.34	-0.9
1,059,688	+		GFF1053	0.35	-1.0
1,059,688	+		GFF1053	0.35	-1.1
1,059,688	+		GFF1053	0.35	-2.2
1,059,696	-		GFF1053	0.36	-1.6
1,059,696	-		GFF1053	0.36	-0.6
1,059,696	-		GFF1053	0.36	-1.9
1,059,696	-		GFF1053	0.36	-1.2
1,059,723	-		GFF1053	0.38	-2.8
1,059,730	+		GFF1053	0.39	-2.0
1,059,741	+		GFF1053	0.40	-0.7
1,059,741	+		GFF1053	0.40	+1.3
1,059,775	-		GFF1053	0.42	-0.4
1,059,789	+		GFF1053	0.43	-1.7
1,059,789	+		GFF1053	0.43	+0.5
1,059,815	+		GFF1053	0.45	-0.6
1,059,823	-		GFF1053	0.46	-2.3
1,059,839	-		GFF1053	0.47	-1.3
1,059,841	+		GFF1053	0.47	-0.7
1,059,849	+		GFF1053	0.48	-0.5
1,059,849	-		GFF1053	0.48	-0.8
1,059,867	-		GFF1053	0.49	-1.0
1,059,867	-		GFF1053	0.49	-1.6
1,059,873	-		GFF1053	0.50	-0.5
1,059,895	+		GFF1053	0.52	-0.6
1,059,895	+		GFF1053	0.52	-0.6
1,059,903	-		GFF1053	0.52	-1.8
1,059,903	-		GFF1053	0.52	-0.8
1,059,917	-		GFF1053	0.53	-0.8
1,059,919	+		GFF1053	0.54	-1.2
1,059,919	-		GFF1053	0.54	-0.3
1,059,924	-		GFF1053	0.54	-1.1
1,059,944	+		GFF1053	0.55	-0.7
1,059,944	+		GFF1053	0.55	-0.7
1,059,944	+		GFF1053	0.55	-1.6
1,059,966	-		GFF1053	0.57	-0.4
1,059,984	+		GFF1053	0.59	-0.8
1,059,999	-		GFF1053	0.60	-0.3
1,060,012	+		GFF1053	0.61	-0.3
1,060,012	+		GFF1053	0.61	-0.3
1,060,012	+		GFF1053	0.61	+0.4
1,060,014	-		GFF1053	0.61	-0.3
1,060,020	-		GFF1053	0.61	-0.0
1,060,022	+		GFF1053	0.62	-0.3
1,060,022	+		GFF1053	0.62	-0.9
1,060,022	+		GFF1053	0.62	+0.3
1,060,022	+		GFF1053	0.62	-0.4
1,060,022	+		GFF1053	0.62	-0.9
1,060,022	+		GFF1053	0.62	-1.9
1,060,030	-		GFF1053	0.62	-1.3
1,060,032	+		GFF1053	0.62	-1.2
1,060,032	+		GFF1053	0.62	-1.9
1,060,032	+		GFF1053	0.62	-0.8
1,060,032	+		GFF1053	0.62	-0.7
1,060,032	+		GFF1053	0.62	-1.2
1,060,032	+		GFF1053	0.62	-0.9
1,060,032	+		GFF1053	0.62	-0.6
1,060,032	+		GFF1053	0.62	-0.3
1,060,040	-		GFF1053	0.63	-1.4
1,060,040	-		GFF1053	0.63	-1.6
1,060,040	-		GFF1053	0.63	-0.3
1,060,040	-		GFF1053	0.63	-1.3
1,060,043	+		GFF1053	0.63	-0.7
1,060,045	-		GFF1053	0.63	-1.1
1,060,045	-		GFF1053	0.63	-2.1
1,060,055	-		GFF1053	0.64	-1.5
1,060,055	-		GFF1053	0.64	-0.7
1,060,061	-		GFF1053	0.65	-0.8
1,060,061	-		GFF1053	0.65	-1.8
1,060,063	+		GFF1053	0.65	-1.4
1,060,064	+		GFF1053	0.65	+0.6
1,060,064	+		GFF1053	0.65	-1.7
1,060,064	+		GFF1053	0.65	-1.7
1,060,064	+		GFF1053	0.65	-2.3
1,060,064	+		GFF1053	0.65	-0.4
1,060,072	-		GFF1053	0.65	-1.4
1,060,072	-		GFF1053	0.65	-1.0
1,060,072	-		GFF1053	0.65	-0.9
1,060,072	-		GFF1053	0.65	-0.3
1,060,072	-		GFF1053	0.65	-0.7
1,060,114	+		GFF1053	0.69	-0.7
1,060,122	-		GFF1053	0.69	-0.7
1,060,122	-		GFF1053	0.69	-0.9
1,060,151	-		GFF1053	0.72	-0.6
1,060,175	+		GFF1053	0.74	-0.6
1,060,193	+		GFF1053	0.75	-0.2
1,060,196	-		GFF1053	0.75	-1.7
1,060,216	+		GFF1053	0.77	-1.2
1,060,216	+		GFF1053	0.77	-1.7
1,060,224	-		GFF1053	0.77	-0.5
1,060,224	-		GFF1053	0.77	-1.5
1,060,224	-		GFF1053	0.77	-0.6
1,060,242	+		GFF1053	0.79	-0.5
1,060,294	+		GFF1053	0.83	-1.0
1,060,300	+		GFF1053	0.83	-0.3
1,060,387	-				-1.6
1,060,394	+				-1.0
1,060,394	+				-0.4
1,060,406	+				-0.3
1,060,409	-				-0.8
1,060,488	-				-1.5
1,060,512	-				+1.3
1,060,530	+				+0.6
1,060,545	+				-1.6
1,060,545	+				+0.2
1,060,545	+				-0.1
1,060,553	-				-0.7
1,060,553	-				-0.6
1,060,553	-				-1.0
1,060,553	-				-0.7
1,060,568	+				-0.4
1,061,174	+				-0.7
1,061,174	+				-0.2
1,061,174	+				+0.0
1,061,174	+				-0.3
1,061,174	+				-0.6
1,061,174	+				-0.7
1,061,174	+				-1.6
1,061,174	+				+0.6
1,061,174	+				+0.3
1,061,174	+				-0.5
1,061,174	+				-1.7
1,061,182	-				-1.9
1,061,182	-				-1.9
1,061,182	-				-0.4
1,061,182	-				-1.9
1,061,182	-				+0.4
1,061,182	-				-0.9
1,061,182	-				-0.2
1,061,182	-				+0.7
1,061,182	-				-0.0
1,061,213	+				-0.1
1,061,218	+				-1.4
1,061,223	+				+0.1
1,061,231	+				-1.4
1,061,231	+				-0.6
1,061,231	+				+0.6
1,061,231	+				+0.1
1,061,231	+				-0.5
1,061,231	-				+0.6
1,061,239	-				-0.6
1,061,246	+				+0.7
1,061,248	+				-0.4
1,061,249	-				-0.8
1,061,267	+				+0.2
1,061,275	-		GFF1055	0.10	-1.4
1,061,292	+		GFF1055	0.12	+0.8
1,061,294	+		GFF1055	0.12	+0.4
1,061,300	-		GFF1055	0.13	-1.2
1,061,300	-		GFF1055	0.13	-0.8
1,061,313	-		GFF1055	0.14	+0.4
1,061,358	+		GFF1055	0.19	-0.8
1,061,424	+		GFF1055	0.26	-0.4
1,061,445	+		GFF1055	0.28	+0.0
1,061,445	+		GFF1055	0.28	-2.0
1,061,455	+		GFF1055	0.29	-0.5
1,061,456	-		GFF1055	0.29	-0.7
1,061,457	+		GFF1055	0.29	-0.0
1,061,467	+		GFF1055	0.30	-0.2
1,061,467	+		GFF1055	0.30	-0.6
1,061,467	+		GFF1055	0.30	+0.1
1,061,467	+		GFF1055	0.30	+0.5
1,061,467	+		GFF1055	0.30	-0.1
1,061,475	-		GFF1055	0.31	-1.4
1,061,477	+		GFF1055	0.31	+0.2
1,061,480	-		GFF1055	0.31	+1.1
1,061,490	-		GFF1055	0.33	-0.8
1,061,509	-		GFF1055	0.34	+0.2
1,061,509	-		GFF1055	0.34	-0.9