Strain Fitness in Sphingobium sp. HT1-2 around GFF1

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1 and GFF2 are separated by 66 nucleotides GFF1 - hypothetical protein, at 285 to 1,115 GFF1 GFF2 - hypothetical protein, at 1,182 to 1,940 GFF2 Position (kb) 0 1 2Strain fitness (log2 ratio) -2 -1 0 1 2at 0.134 kb on + strandat 0.134 kb on + strandat 0.134 kb on + strandat 0.134 kb on + strandat 0.142 kb on + strandat 0.150 kb on + strandat 0.155 kb on + strandat 0.162 kb on + strandat 0.162 kb on + strandat 0.215 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.225 kb on - strandat 0.299 kb on + strandat 0.299 kb on + strandat 0.299 kb on + strandat 0.301 kb on + strandat 0.307 kb on - strandat 0.339 kb on - strandat 0.356 kb on - strandat 0.358 kb on + strandat 0.379 kb on + strand, within GFF1at 0.468 kb on + strand, within GFF1at 0.468 kb on + strand, within GFF1at 0.527 kb on - strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.628 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.663 kb on + strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.671 kb on - strand, within GFF1at 0.697 kb on + strand, within GFF1at 0.705 kb on - strand, within GFF1at 0.705 kb on - strand, within GFF1at 0.709 kb on + strand, within GFF1at 0.717 kb on - strand, within GFF1at 0.741 kb on + strand, within GFF1at 0.743 kb on + strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.751 kb on - strand, within GFF1at 0.762 kb on + strand, within GFF1at 0.767 kb on - strand, within GFF1at 0.772 kb on + strand, within GFF1at 0.772 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.808 kb on + strand, within GFF1at 0.816 kb on - strand, within GFF1at 0.841 kb on - strand, within GFF1at 0.857 kb on - strand, within GFF1at 0.882 kb on + strand, within GFF1at 0.882 kb on - strand, within GFF1at 0.887 kb on + strand, within GFF1at 0.890 kb on - strand, within GFF1at 0.895 kb on - strand, within GFF1at 0.895 kb on - strand, within GFF1at 0.931 kb on + strand, within GFF1at 0.931 kb on + strand, within GFF1at 0.939 kb on - strand, within GFF1at 0.947 kb on - strand, within GFF1at 0.956 kb on + strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.964 kb on - strand, within GFF1at 0.966 kb on - strand, within GFF1at 1.003 kb on - strand, within GFF1at 1.134 kb on - strandat 1.152 kb on - strandat 1.170 kb on - strandat 1.258 kb on - strand, within GFF2at 1.341 kb on + strand, within GFF2at 1.359 kb on + strand, within GFF2at 1.359 kb on + strand, within GFF2at 1.367 kb on - strand, within GFF2at 1.368 kb on + strand, within GFF2at 1.406 kb on + strand, within GFF2at 1.406 kb on + strand, within GFF2at 1.412 kb on - strand, within GFF2at 1.414 kb on - strand, within GFF2at 1.427 kb on - strand, within GFF2at 1.438 kb on - strand, within GFF2at 1.469 kb on - strand, within GFF2at 1.495 kb on - strand, within GFF2at 1.518 kb on - strand, within GFF2at 1.611 kb on - strand, within GFF2at 1.637 kb on - strand, within GFF2at 1.656 kb on + strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.664 kb on - strand, within GFF2at 1.748 kb on + strand, within GFF2at 1.751 kb on - strand, within GFF2at 1.751 kb on - strand, within GFF2at 1.766 kb on - strand, within GFF2at 1.786 kb on + strand, within GFF2at 1.896 kb on + strandat 1.904 kb on - strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.071 kb on + strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.079 kb on - strandat 2.081 kb on + strandat 2.088 kb on + strandat 2.096 kb on - strandat 2.113 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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134 + -2.0
134 + +0.3
134 + +1.1
134 + +0.4
142 + +0.4
150 + +2.2
155 + +2.2
162 + -0.4
162 + -0.6
215 - -1.0
225 - +1.0
225 - -1.5
225 - -0.6
225 - +0.3
299 + -1.3
299 + +0.1
299 + -1.0
301 + -0.5
307 - +1.1
339 - -0.0
356 - +0.6
358 + -0.7
379 + GFF1 0.11 -0.8
468 + GFF1 0.22 +0.1
468 + GFF1 0.22 +1.6
527 - GFF1 0.29 -0.6
628 + GFF1 0.41 -0.1
628 + GFF1 0.41 -1.0
628 + GFF1 0.41 +0.4
663 + GFF1 0.45 +0.7
663 + GFF1 0.45 -1.6
663 + GFF1 0.45 +1.3
663 + GFF1 0.45 +0.3
671 - GFF1 0.46 -1.1
671 - GFF1 0.46 +1.1
671 - GFF1 0.46 +0.8
697 + GFF1 0.50 -0.3
705 - GFF1 0.51 +0.2
705 - GFF1 0.51 -0.9
709 + GFF1 0.51 +0.7
717 - GFF1 0.52 -0.8
741 + GFF1 0.55 +0.4
743 + GFF1 0.55 -0.3
751 - GFF1 0.56 -1.6
751 - GFF1 0.56 -0.1
751 - GFF1 0.56 -0.8
751 - GFF1 0.56 +1.1
762 + GFF1 0.57 -0.9
767 - GFF1 0.58 -0.4
772 + GFF1 0.59 -1.1
772 + GFF1 0.59 -0.1
808 + GFF1 0.63 -0.7
808 + GFF1 0.63 -2.0
808 + GFF1 0.63 -0.5
816 - GFF1 0.64 -0.5
841 - GFF1 0.67 +0.4
857 - GFF1 0.69 -0.6
882 + GFF1 0.72 -0.6
882 - GFF1 0.72 -0.4
887 + GFF1 0.72 +0.7
890 - GFF1 0.73 +1.2
895 - GFF1 0.73 -1.2
895 - GFF1 0.73 -1.8
931 + GFF1 0.78 -0.3
931 + GFF1 0.78 -1.5
939 - GFF1 0.79 -0.0
947 - GFF1 0.80 -0.6
956 + GFF1 0.81 +0.2
964 - GFF1 0.82 +1.1
964 - GFF1 0.82 +0.2
964 - GFF1 0.82 -0.2
964 - GFF1 0.82 +0.4
964 - GFF1 0.82 -1.0
966 - GFF1 0.82 +0.5
1,003 - GFF1 0.86 +0.7
1,134 - +0.5
1,152 - +0.7
1,170 - -0.2
1,258 - GFF2 0.10 +0.2
1,341 + GFF2 0.21 -1.5
1,359 + GFF2 0.23 +0.8
1,359 + GFF2 0.23 -0.0
1,367 - GFF2 0.24 +0.1
1,368 + GFF2 0.25 +1.4
1,406 + GFF2 0.30 -0.1
1,406 + GFF2 0.30 +0.2
1,412 - GFF2 0.30 -0.1
1,414 - GFF2 0.31 +1.0
1,427 - GFF2 0.32 +0.5
1,438 - GFF2 0.34 -2.1
1,469 - GFF2 0.38 +0.2
1,495 - GFF2 0.41 +0.5
1,518 - GFF2 0.44 +0.1
1,611 - GFF2 0.57 -1.0
1,637 - GFF2 0.60 +0.3
1,656 + GFF2 0.62 -1.1
1,664 - GFF2 0.64 +0.1
1,664 - GFF2 0.64 +0.2
1,664 - GFF2 0.64 +1.2
1,748 + GFF2 0.75 -1.1
1,751 - GFF2 0.75 -0.3
1,751 - GFF2 0.75 +0.2
1,766 - GFF2 0.77 +0.1
1,786 + GFF2 0.80 -1.3
1,896 + +0.3
1,904 - +0.4
2,071 + -1.1
2,071 + -0.3
2,071 + +0.6
2,071 + +2.3
2,071 + +1.2
2,071 + -0.2
2,071 + -0.0
2,071 + +0.2
2,079 - -0.2
2,079 - +0.4
2,079 - +0.3
2,079 - -0.5
2,079 - -0.1
2,079 - -1.6
2,079 - +1.4
2,079 - -0.5
2,079 - -0.3
2,079 - +0.8
2,079 - +0.7
2,079 - +0.9
2,079 - -0.7
2,081 + +0.6
2,088 + -0.2
2,096 - +1.2
2,113 - -0.4

Or see this region's nucleotide sequence