Strain Fitness in Sphingobium sp. HT1-2 around GFF975

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF974 and GFF975 overlap by 4 nucleotidesGFF975 and GFF976 are separated by 246 nucleotides GFF974 - Iron-sulfur cluster assembly protein SufB, at 973,662 to 975,146 GFF974 GFF975 - Iron-sulfur cluster regulator IscR, at 975,143 to 975,553 GFF975 GFF976 - hypothetical protein, at 975,800 to 976,744 GFF976 Position (kb) 975 976Strain fitness (log2 ratio) -2 -1 0 1at 975.181 kb on - strandat 975.213 kb on + strand, within GFF975at 975.234 kb on + strand, within GFF975at 975.242 kb on - strand, within GFF975at 975.244 kb on + strand, within GFF975at 975.261 kb on + strand, within GFF975at 975.274 kb on - strand, within GFF975at 975.293 kb on - strand, within GFF975at 975.301 kb on - strand, within GFF975at 975.307 kb on - strand, within GFF975at 975.307 kb on - strand, within GFF975at 975.330 kb on - strand, within GFF975at 975.355 kb on + strand, within GFF975at 975.434 kb on + strand, within GFF975at 975.434 kb on + strand, within GFF975at 975.434 kb on + strand, within GFF975at 975.447 kb on - strand, within GFF975at 975.468 kb on + strand, within GFF975at 975.471 kb on - strand, within GFF975at 975.477 kb on + strand, within GFF975at 975.489 kb on + strand, within GFF975at 975.497 kb on - strand, within GFF975at 975.643 kb on + strandat 975.697 kb on + strandat 975.698 kb on + strandat 975.698 kb on + strandat 975.698 kb on + strandat 975.706 kb on - strandat 975.706 kb on - strandat 975.713 kb on - strandat 975.726 kb on + strandat 975.726 kb on + strandat 975.726 kb on + strandat 975.726 kb on + strandat 975.729 kb on - strandat 975.735 kb on + strandat 975.747 kb on + strandat 975.747 kb on + strandat 975.754 kb on + strandat 975.755 kb on - strandat 975.755 kb on - strandat 975.757 kb on - strandat 975.757 kb on - strandat 975.762 kb on - strandat 975.762 kb on - strandat 975.762 kb on - strandat 975.787 kb on + strandat 975.810 kb on + strandat 975.812 kb on + strandat 975.812 kb on + strandat 975.812 kb on + strandat 975.834 kb on + strandat 975.838 kb on + strandat 975.841 kb on - strandat 975.841 kb on - strandat 975.841 kb on - strandat 975.853 kb on + strandat 975.853 kb on + strandat 975.853 kb on + strandat 975.860 kb on - strandat 975.861 kb on - strandat 975.861 kb on - strandat 975.866 kb on - strandat 975.870 kb on - strandat 975.881 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.882 kb on + strandat 975.883 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.890 kb on - strandat 975.892 kb on + strandat 975.898 kb on + strand, within GFF976at 975.900 kb on - strand, within GFF976at 975.929 kb on + strand, within GFF976at 975.943 kb on + strand, within GFF976at 975.951 kb on - strand, within GFF976at 975.968 kb on - strand, within GFF976at 975.970 kb on + strand, within GFF976at 975.973 kb on - strand, within GFF976at 975.978 kb on - strand, within GFF976at 975.980 kb on + strand, within GFF976at 975.981 kb on + strand, within GFF976at 975.993 kb on + strand, within GFF976at 975.996 kb on - strand, within GFF976at 975.997 kb on - strand, within GFF976at 976.001 kb on - strand, within GFF976at 976.008 kb on + strand, within GFF976at 976.008 kb on + strand, within GFF976at 976.008 kb on + strand, within GFF976at 976.016 kb on - strand, within GFF976at 976.016 kb on - strand, within GFF976at 976.018 kb on + strand, within GFF976at 976.020 kb on + strand, within GFF976at 976.061 kb on - strand, within GFF976at 976.112 kb on + strand, within GFF976at 976.118 kb on - strand, within GFF976at 976.120 kb on + strand, within GFF976at 976.120 kb on + strand, within GFF976at 976.154 kb on + strand, within GFF976at 976.154 kb on + strand, within GFF976at 976.162 kb on - strand, within GFF976at 976.183 kb on - strand, within GFF976at 976.185 kb on + strand, within GFF976at 976.193 kb on - strand, within GFF976at 976.197 kb on + strand, within GFF976at 976.197 kb on + strand, within GFF976at 976.197 kb on + strand, within GFF976at 976.197 kb on + strand, within GFF976at 976.197 kb on + strand, within GFF976at 976.197 kb on + strand, within GFF976at 976.205 kb on - strand, within GFF976at 976.205 kb on - strand, within GFF976at 976.205 kb on - strand, within GFF976at 976.205 kb on - strand, within GFF976at 976.205 kb on - strand, within GFF976at 976.221 kb on + strand, within GFF976at 976.221 kb on + strand, within GFF976at 976.221 kb on + strand, within GFF976at 976.223 kb on - strand, within GFF976at 976.226 kb on + strand, within GFF976at 976.227 kb on - strand, within GFF976at 976.229 kb on - strand, within GFF976at 976.229 kb on - strand, within GFF976at 976.229 kb on - strand, within GFF976at 976.244 kb on - strand, within GFF976at 976.253 kb on - strand, within GFF976at 976.260 kb on - strand, within GFF976at 976.260 kb on - strand, within GFF976at 976.260 kb on - strand, within GFF976at 976.262 kb on - strand, within GFF976at 976.279 kb on + strand, within GFF976at 976.279 kb on + strand, within GFF976at 976.295 kb on + strand, within GFF976at 976.316 kb on + strand, within GFF976at 976.341 kb on - strand, within GFF976at 976.347 kb on + strand, within GFF976at 976.355 kb on - strand, within GFF976at 976.355 kb on - strand, within GFF976at 976.355 kb on - strand, within GFF976at 976.365 kb on - strand, within GFF976at 976.386 kb on - strand, within GFF976at 976.397 kb on - strand, within GFF976at 976.404 kb on + strand, within GFF976at 976.422 kb on - strand, within GFF976at 976.424 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.435 kb on + strand, within GFF976at 976.440 kb on + strand, within GFF976at 976.440 kb on + strand, within GFF976at 976.440 kb on + strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.443 kb on - strand, within GFF976at 976.448 kb on - strand, within GFF976at 976.448 kb on - strand, within GFF976at 976.466 kb on + strand, within GFF976at 976.468 kb on + strand, within GFF976at 976.471 kb on + strand, within GFF976at 976.471 kb on + strand, within GFF976at 976.474 kb on - strand, within GFF976at 976.476 kb on + strand, within GFF976at 976.479 kb on - strand, within GFF976at 976.479 kb on - strand, within GFF976at 976.479 kb on - strand, within GFF976at 976.493 kb on + strand, within GFF976at 976.511 kb on - strand, within GFF976at 976.511 kb on - strand, within GFF976

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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975,181 - -0.8
975,213 + GFF975 0.17 -1.3
975,234 + GFF975 0.22 -0.5
975,242 - GFF975 0.24 +0.8
975,244 + GFF975 0.25 -0.9
975,261 + GFF975 0.29 -0.5
975,274 - GFF975 0.32 +1.6
975,293 - GFF975 0.36 -1.7
975,301 - GFF975 0.38 +0.5
975,307 - GFF975 0.40 +1.1
975,307 - GFF975 0.40 -0.9
975,330 - GFF975 0.45 -0.8
975,355 + GFF975 0.52 -1.2
975,434 + GFF975 0.71 -0.7
975,434 + GFF975 0.71 -0.5
975,434 + GFF975 0.71 -1.1
975,447 - GFF975 0.74 -1.5
975,468 + GFF975 0.79 -1.2
975,471 - GFF975 0.80 -0.5
975,477 + GFF975 0.81 -1.6
975,489 + GFF975 0.84 +0.2
975,497 - GFF975 0.86 -0.8
975,643 + -1.1
975,697 + +0.7
975,698 + -1.7
975,698 + +0.2
975,698 + -0.3
975,706 - +0.9
975,706 - +1.2
975,713 - -0.8
975,726 + -0.6
975,726 + -1.1
975,726 + -0.5
975,726 + -0.9
975,729 - +0.3
975,735 + -0.6
975,747 + +0.4
975,747 + -0.4
975,754 + -0.3
975,755 - -0.6
975,755 - -0.1
975,757 - -1.0
975,757 - +1.1
975,762 - -0.1
975,762 - -1.3
975,762 - +0.4
975,787 + -0.9
975,810 + -0.7
975,812 + -0.6
975,812 + -0.9
975,812 + +0.0
975,834 + +0.8
975,838 + -1.1
975,841 - -1.8
975,841 - -0.7
975,841 - -0.6
975,853 + +1.0
975,853 + -0.3
975,853 + -0.7
975,860 - -2.3
975,861 - +0.5
975,861 - +0.2
975,866 - -0.4
975,870 - -0.7
975,881 + +0.4
975,882 + +0.6
975,882 + +0.9
975,882 + -0.6
975,882 + -1.0
975,882 + -2.4
975,882 + +0.5
975,882 + -1.8
975,882 + -0.1
975,882 + -1.5
975,882 + -1.3
975,882 + -1.3
975,882 + -0.4
975,883 - -1.4
975,890 - -0.1
975,890 - -1.9
975,890 - -1.7
975,890 - +1.2
975,890 - -0.7
975,890 - -1.2
975,890 - -1.7
975,890 - -0.8
975,892 + -0.1
975,898 + GFF976 0.10 +0.6
975,900 - GFF976 0.11 +0.2
975,929 + GFF976 0.14 -0.6
975,943 + GFF976 0.15 -1.6
975,951 - GFF976 0.16 -0.7
975,968 - GFF976 0.18 -1.6
975,970 + GFF976 0.18 +0.9
975,973 - GFF976 0.18 -1.1
975,978 - GFF976 0.19 -0.7
975,980 + GFF976 0.19 -0.2
975,981 + GFF976 0.19 -0.2
975,993 + GFF976 0.20 -0.0
975,996 - GFF976 0.21 -0.3
975,997 - GFF976 0.21 -0.6
976,001 - GFF976 0.21 +0.1
976,008 + GFF976 0.22 -1.9
976,008 + GFF976 0.22 -0.5
976,008 + GFF976 0.22 -0.3
976,016 - GFF976 0.23 +0.1
976,016 - GFF976 0.23 -0.2
976,018 + GFF976 0.23 -0.6
976,020 + GFF976 0.23 -1.1
976,061 - GFF976 0.28 -0.1
976,112 + GFF976 0.33 -1.1
976,118 - GFF976 0.34 -0.7
976,120 + GFF976 0.34 -0.6
976,120 + GFF976 0.34 -1.1
976,154 + GFF976 0.37 -1.7
976,154 + GFF976 0.37 -0.7
976,162 - GFF976 0.38 -1.2
976,183 - GFF976 0.41 +0.2
976,185 + GFF976 0.41 -0.8
976,193 - GFF976 0.42 +0.5
976,197 + GFF976 0.42 +0.2
976,197 + GFF976 0.42 -1.8
976,197 + GFF976 0.42 +0.2
976,197 + GFF976 0.42 -1.5
976,197 + GFF976 0.42 -1.3
976,197 + GFF976 0.42 -1.9
976,205 - GFF976 0.43 -2.1
976,205 - GFF976 0.43 -1.7
976,205 - GFF976 0.43 -0.0
976,205 - GFF976 0.43 -0.3
976,205 - GFF976 0.43 -0.1
976,221 + GFF976 0.45 +0.1
976,221 + GFF976 0.45 +0.6
976,221 + GFF976 0.45 +0.0
976,223 - GFF976 0.45 -0.1
976,226 + GFF976 0.45 -1.7
976,227 - GFF976 0.45 -1.3
976,229 - GFF976 0.45 +0.8
976,229 - GFF976 0.45 -0.9
976,229 - GFF976 0.45 +0.6
976,244 - GFF976 0.47 -0.7
976,253 - GFF976 0.48 -2.0
976,260 - GFF976 0.49 +1.0
976,260 - GFF976 0.49 -0.1
976,260 - GFF976 0.49 -1.0
976,262 - GFF976 0.49 +0.2
976,279 + GFF976 0.51 +0.9
976,279 + GFF976 0.51 +1.2
976,295 + GFF976 0.52 -0.7
976,316 + GFF976 0.55 +0.7
976,341 - GFF976 0.57 +0.6
976,347 + GFF976 0.58 -1.8
976,355 - GFF976 0.59 -1.2
976,355 - GFF976 0.59 +0.2
976,355 - GFF976 0.59 -0.8
976,365 - GFF976 0.60 +0.4
976,386 - GFF976 0.62 -0.5
976,397 - GFF976 0.63 -0.8
976,404 + GFF976 0.64 -0.6
976,422 - GFF976 0.66 +0.4
976,424 + GFF976 0.66 +1.2
976,435 + GFF976 0.67 +1.0
976,435 + GFF976 0.67 -0.4
976,435 + GFF976 0.67 -0.1
976,435 + GFF976 0.67 -1.0
976,435 + GFF976 0.67 -0.4
976,435 + GFF976 0.67 -0.5
976,435 + GFF976 0.67 +0.1
976,435 + GFF976 0.67 -0.4
976,440 + GFF976 0.68 +0.4
976,440 + GFF976 0.68 +0.9
976,440 + GFF976 0.68 +0.0
976,443 - GFF976 0.68 -2.1
976,443 - GFF976 0.68 -2.3
976,443 - GFF976 0.68 -0.5
976,443 - GFF976 0.68 -1.0
976,443 - GFF976 0.68 +0.4
976,443 - GFF976 0.68 +0.5
976,443 - GFF976 0.68 -1.8
976,448 - GFF976 0.69 +0.1
976,448 - GFF976 0.69 +0.6
976,466 + GFF976 0.70 -0.0
976,468 + GFF976 0.71 -0.6
976,471 + GFF976 0.71 +0.8
976,471 + GFF976 0.71 +0.3
976,474 - GFF976 0.71 -1.2
976,476 + GFF976 0.72 -1.1
976,479 - GFF976 0.72 -0.1
976,479 - GFF976 0.72 -0.5
976,479 - GFF976 0.72 +0.4
976,493 + GFF976 0.73 -0.6
976,511 - GFF976 0.75 +0.4
976,511 - GFF976 0.75 +0.3

Or see this region's nucleotide sequence