Strain Fitness in Sphingobium sp. HT1-2 around GFF954

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF952 and GFF953 are separated by 13 nucleotidesGFF953 and GFF954 are separated by 97 nucleotidesGFF954 and GFF955 are separated by 110 nucleotidesGFF955 and GFF956 are separated by 140 nucleotides GFF952 - Gamma-glutamyl phosphate reductase (EC 1.2.1.41), at 951,909 to 953,174 GFF952 GFF953 - hypothetical protein, at 953,188 to 953,313 GFF953 GFF954 - Regulatory protein LuxR, at 953,411 to 954,511 GFF954 GFF955 - Ribosomal RNA adenine dimethylase domain protein, at 954,622 to 955,269 GFF955 GFF956 - AAA family ATPase Cdc48, at 955,410 to 957,704 GFF956 Position (kb) 953 954 955Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 952.437 kb on + strand, within GFF952at 952.453 kb on - strand, within GFF952at 952.500 kb on - strand, within GFF952at 952.526 kb on + strand, within GFF952at 952.541 kb on - strand, within GFF952at 952.558 kb on - strand, within GFF952at 952.603 kb on - strand, within GFF952at 952.617 kb on - strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.620 kb on + strand, within GFF952at 952.651 kb on - strand, within GFF952at 952.674 kb on + strand, within GFF952at 952.716 kb on + strand, within GFF952at 952.730 kb on - strand, within GFF952at 952.730 kb on - strand, within GFF952at 952.745 kb on + strand, within GFF952at 952.780 kb on - strand, within GFF952at 952.806 kb on + strand, within GFF952at 952.806 kb on + strand, within GFF952at 952.835 kb on - strand, within GFF952at 952.857 kb on + strand, within GFF952at 952.884 kb on + strand, within GFF952at 952.891 kb on + strand, within GFF952at 952.901 kb on + strand, within GFF952at 952.971 kb on - strand, within GFF952at 952.976 kb on - strand, within GFF952at 952.981 kb on - strand, within GFF952at 952.981 kb on - strand, within GFF952at 953.031 kb on - strand, within GFF952at 953.042 kb on - strand, within GFF952at 953.107 kb on + strandat 953.122 kb on + strandat 953.147 kb on + strandat 953.167 kb on - strandat 953.167 kb on - strandat 953.239 kb on - strand, within GFF953at 953.296 kb on - strand, within GFF953at 953.318 kb on + strandat 953.441 kb on - strandat 953.459 kb on + strandat 953.473 kb on + strandat 953.481 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.486 kb on + strandat 953.494 kb on - strandat 953.508 kb on + strandat 953.601 kb on - strand, within GFF954at 953.622 kb on - strand, within GFF954at 953.670 kb on + strand, within GFF954at 953.678 kb on - strand, within GFF954at 953.678 kb on - strand, within GFF954at 953.683 kb on - strand, within GFF954at 953.732 kb on + strand, within GFF954at 953.778 kb on + strand, within GFF954at 953.780 kb on + strand, within GFF954at 953.780 kb on + strand, within GFF954at 953.780 kb on + strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.788 kb on - strand, within GFF954at 953.801 kb on + strand, within GFF954at 953.801 kb on + strand, within GFF954at 953.816 kb on + strand, within GFF954at 953.824 kb on - strand, within GFF954at 953.843 kb on - strand, within GFF954at 953.879 kb on - strand, within GFF954at 953.904 kb on + strand, within GFF954at 953.904 kb on + strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.912 kb on - strand, within GFF954at 953.945 kb on + strand, within GFF954at 953.952 kb on + strand, within GFF954at 953.961 kb on + strand, within GFF954at 953.997 kb on + strand, within GFF954at 954.015 kb on - strand, within GFF954at 954.027 kb on + strand, within GFF954at 954.040 kb on + strand, within GFF954at 954.040 kb on + strand, within GFF954at 954.049 kb on - strand, within GFF954at 954.066 kb on - strand, within GFF954at 954.066 kb on - strand, within GFF954at 954.079 kb on + strand, within GFF954at 954.087 kb on - strand, within GFF954at 954.100 kb on - strand, within GFF954at 954.106 kb on - strand, within GFF954at 954.118 kb on - strand, within GFF954at 954.136 kb on - strand, within GFF954at 954.136 kb on - strand, within GFF954at 954.180 kb on + strand, within GFF954at 954.194 kb on + strand, within GFF954at 954.202 kb on - strand, within GFF954at 954.240 kb on - strand, within GFF954at 954.334 kb on + strand, within GFF954at 954.364 kb on + strand, within GFF954at 954.472 kb on + strandat 954.498 kb on + strandat 954.508 kb on + strandat 954.531 kb on + strandat 954.542 kb on + strandat 954.542 kb on + strandat 954.550 kb on - strandat 954.550 kb on - strandat 954.557 kb on + strandat 954.620 kb on + strandat 954.629 kb on + strandat 954.629 kb on + strandat 954.646 kb on + strandat 954.646 kb on + strandat 954.673 kb on + strandat 954.673 kb on + strandat 954.673 kb on + strandat 954.681 kb on - strandat 954.701 kb on + strand, within GFF955at 954.701 kb on + strand, within GFF955at 954.701 kb on + strand, within GFF955at 954.701 kb on + strand, within GFF955at 954.706 kb on + strand, within GFF955at 954.709 kb on - strand, within GFF955at 954.709 kb on - strand, within GFF955at 954.710 kb on + strand, within GFF955at 954.710 kb on + strand, within GFF955at 954.806 kb on - strand, within GFF955at 954.806 kb on - strand, within GFF955at 954.811 kb on + strand, within GFF955at 954.839 kb on + strand, within GFF955at 954.842 kb on - strand, within GFF955at 954.847 kb on - strand, within GFF955at 954.849 kb on + strand, within GFF955at 954.957 kb on + strand, within GFF955at 954.957 kb on + strand, within GFF955at 954.957 kb on + strand, within GFF955at 954.965 kb on - strand, within GFF955at 955.021 kb on - strand, within GFF955at 955.036 kb on - strand, within GFF955at 955.038 kb on + strand, within GFF955at 955.038 kb on + strand, within GFF955at 955.038 kb on + strand, within GFF955at 955.038 kb on + strand, within GFF955at 955.038 kb on + strand, within GFF955at 955.038 kb on + strand, within GFF955at 955.046 kb on - strand, within GFF955at 955.046 kb on - strand, within GFF955at 955.046 kb on - strand, within GFF955at 955.046 kb on - strand, within GFF955at 955.080 kb on - strand, within GFF955at 955.086 kb on + strand, within GFF955at 955.089 kb on - strand, within GFF955at 955.089 kb on - strand, within GFF955at 955.091 kb on - strand, within GFF955at 955.122 kb on + strand, within GFF955at 955.143 kb on - strand, within GFF955at 955.144 kb on - strand, within GFF955at 955.158 kb on - strand, within GFF955at 955.161 kb on - strand, within GFF955at 955.197 kb on - strand, within GFF955at 955.235 kb on - strandat 955.265 kb on - strandat 955.364 kb on + strandat 955.413 kb on + strandat 955.474 kb on - strandat 955.478 kb on + strandat 955.478 kb on + strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.486 kb on - strandat 955.489 kb on + strandat 955.489 kb on + strandat 955.497 kb on - strandat 955.507 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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952,437 + GFF952 0.42 -1.0
952,453 - GFF952 0.43 -1.5
952,500 - GFF952 0.47 -2.2
952,526 + GFF952 0.49 -2.3
952,541 - GFF952 0.50 +2.0
952,558 - GFF952 0.51 -0.1
952,603 - GFF952 0.55 -0.9
952,617 - GFF952 0.56 -0.0
952,620 + GFF952 0.56 +0.2
952,620 + GFF952 0.56 -2.8
952,651 - GFF952 0.59 -1.5
952,674 + GFF952 0.60 -1.9
952,716 + GFF952 0.64 -2.7
952,730 - GFF952 0.65 -1.5
952,730 - GFF952 0.65 -1.4
952,745 + GFF952 0.66 -3.1
952,780 - GFF952 0.69 -0.6
952,806 + GFF952 0.71 -1.4
952,806 + GFF952 0.71 -1.5
952,835 - GFF952 0.73 -0.2
952,857 + GFF952 0.75 -1.4
952,884 + GFF952 0.77 -1.3
952,891 + GFF952 0.78 -1.8
952,901 + GFF952 0.78 -2.0
952,971 - GFF952 0.84 +0.0
952,976 - GFF952 0.84 -1.3
952,981 - GFF952 0.85 -1.6
952,981 - GFF952 0.85 -1.8
953,031 - GFF952 0.89 -0.3
953,042 - GFF952 0.89 +0.8
953,107 + -1.6
953,122 + -0.6
953,147 + -1.3
953,167 - -0.9
953,167 - +0.2
953,239 - GFF953 0.40 +0.5
953,296 - GFF953 0.86 +0.2
953,318 + +0.8
953,441 - -0.1
953,459 + -0.2
953,473 + -0.3
953,481 + -0.3
953,486 + -0.3
953,486 + +0.2
953,486 + +0.4
953,486 + -0.5
953,486 + +0.9
953,494 - -0.6
953,508 + -0.6
953,601 - GFF954 0.17 -0.5
953,622 - GFF954 0.19 +0.9
953,670 + GFF954 0.24 -1.4
953,678 - GFF954 0.24 +0.5
953,678 - GFF954 0.24 +0.5
953,683 - GFF954 0.25 +0.4
953,732 + GFF954 0.29 -1.1
953,778 + GFF954 0.33 +0.4
953,780 + GFF954 0.34 +1.5
953,780 + GFF954 0.34 +0.1
953,780 + GFF954 0.34 +0.9
953,788 - GFF954 0.34 +0.1
953,788 - GFF954 0.34 -0.6
953,788 - GFF954 0.34 +1.0
953,788 - GFF954 0.34 +0.7
953,788 - GFF954 0.34 -0.3
953,788 - GFF954 0.34 +0.0
953,801 + GFF954 0.35 +0.8
953,801 + GFF954 0.35 +1.1
953,816 + GFF954 0.37 +1.6
953,824 - GFF954 0.38 +2.0
953,843 - GFF954 0.39 -1.7
953,879 - GFF954 0.43 -3.2
953,904 + GFF954 0.45 +1.4
953,904 + GFF954 0.45 -0.0
953,912 - GFF954 0.46 -1.1
953,912 - GFF954 0.46 +0.7
953,912 - GFF954 0.46 -1.2
953,912 - GFF954 0.46 +1.9
953,945 + GFF954 0.49 +0.5
953,952 + GFF954 0.49 +1.0
953,961 + GFF954 0.50 -1.1
953,997 + GFF954 0.53 -0.2
954,015 - GFF954 0.55 +0.5
954,027 + GFF954 0.56 +0.4
954,040 + GFF954 0.57 +1.4
954,040 + GFF954 0.57 +0.4
954,049 - GFF954 0.58 -0.1
954,066 - GFF954 0.59 +1.4
954,066 - GFF954 0.59 -1.9
954,079 + GFF954 0.61 -0.1
954,087 - GFF954 0.61 +1.1
954,100 - GFF954 0.63 -2.1
954,106 - GFF954 0.63 -0.4
954,118 - GFF954 0.64 +0.0
954,136 - GFF954 0.66 -0.1
954,136 - GFF954 0.66 +0.1
954,180 + GFF954 0.70 +0.8
954,194 + GFF954 0.71 +0.2
954,202 - GFF954 0.72 +0.2
954,240 - GFF954 0.75 -1.1
954,334 + GFF954 0.84 +0.2
954,364 + GFF954 0.87 -0.6
954,472 + +1.1
954,498 + -0.9
954,508 + -1.0
954,531 + +1.0
954,542 + -1.9
954,542 + +0.7
954,550 - -1.2
954,550 - +0.6
954,557 + -0.1
954,620 + +1.0
954,629 + +0.3
954,629 + +0.2
954,646 + +1.6
954,646 + -0.6
954,673 + -0.4
954,673 + -0.3
954,673 + +0.5
954,681 - +0.4
954,701 + GFF955 0.12 +0.5
954,701 + GFF955 0.12 +0.3
954,701 + GFF955 0.12 -1.2
954,701 + GFF955 0.12 -1.6
954,706 + GFF955 0.13 -2.6
954,709 - GFF955 0.13 -1.9
954,709 - GFF955 0.13 +1.2
954,710 + GFF955 0.14 +0.9
954,710 + GFF955 0.14 -0.4
954,806 - GFF955 0.28 -0.1
954,806 - GFF955 0.28 +0.4
954,811 + GFF955 0.29 -0.6
954,839 + GFF955 0.33 +0.8
954,842 - GFF955 0.34 +0.3
954,847 - GFF955 0.35 -1.4
954,849 + GFF955 0.35 +0.0
954,957 + GFF955 0.52 +0.1
954,957 + GFF955 0.52 -0.3
954,957 + GFF955 0.52 -1.4
954,965 - GFF955 0.53 +0.2
955,021 - GFF955 0.62 -0.2
955,036 - GFF955 0.64 -0.5
955,038 + GFF955 0.64 -1.0
955,038 + GFF955 0.64 +2.2
955,038 + GFF955 0.64 +1.0
955,038 + GFF955 0.64 -0.7
955,038 + GFF955 0.64 -0.4
955,038 + GFF955 0.64 -0.4
955,046 - GFF955 0.65 -0.8
955,046 - GFF955 0.65 -0.5
955,046 - GFF955 0.65 +1.5
955,046 - GFF955 0.65 -1.0
955,080 - GFF955 0.71 -0.9
955,086 + GFF955 0.72 +0.0
955,089 - GFF955 0.72 -0.1
955,089 - GFF955 0.72 -1.4
955,091 - GFF955 0.72 -1.4
955,122 + GFF955 0.77 -0.4
955,143 - GFF955 0.80 -0.9
955,144 - GFF955 0.81 +1.9
955,158 - GFF955 0.83 +0.2
955,161 - GFF955 0.83 -0.6
955,197 - GFF955 0.89 +0.6
955,235 - -0.0
955,265 - -1.0
955,364 + +0.8
955,413 + -1.3
955,474 - +0.3
955,478 + -0.4
955,478 + -0.6
955,486 - -0.8
955,486 - -0.3
955,486 - +0.1
955,486 - -0.2
955,486 - +0.3
955,486 - +0.1
955,486 - +0.5
955,486 - +0.6
955,486 - +0.9
955,489 + +0.3
955,489 + -0.8
955,497 - +1.1
955,507 - +0.5

Or see this region's nucleotide sequence