Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF948 and GFF949 overlap by 4 nucleotides GFF949 and GFF950 are separated by 21 nucleotides GFF950 and GFF951 are separated by 5 nucleotides
GFF948 - Cytochrome P450, at 948,243 to 949,610
GFF948
GFF949 - hypothetical protein, at 949,607 to 950,734
GFF949
GFF950 - hypothetical protein, at 950,756 to 951,049
GFF950
GFF951 - 2-Keto-3-deoxy-D-manno-octulosonate-8-phosphate synthase (EC 2.5.1.55), at 951,055 to 951,882
GFF951
Position (kb) 949
950
951 Strain fitness (log2 ratio) -2
-1
0
1
2 at 948.666 kb on + strand, within GFF948 at 948.674 kb on - strand, within GFF948 at 948.690 kb on + strand, within GFF948 at 948.690 kb on + strand, within GFF948 at 948.690 kb on + strand, within GFF948 at 948.698 kb on - strand, within GFF948 at 948.698 kb on - strand, within GFF948 at 948.725 kb on - strand, within GFF948 at 948.733 kb on + strand, within GFF948 at 948.744 kb on - strand, within GFF948 at 948.744 kb on - strand, within GFF948 at 948.746 kb on - strand, within GFF948 at 948.773 kb on - strand, within GFF948 at 948.782 kb on + strand, within GFF948 at 948.788 kb on - strand, within GFF948 at 948.823 kb on + strand, within GFF948 at 948.860 kb on - strand, within GFF948 at 948.884 kb on - strand, within GFF948 at 948.885 kb on - strand, within GFF948 at 948.927 kb on - strand, within GFF948 at 948.982 kb on - strand, within GFF948 at 948.998 kb on - strand, within GFF948 at 948.998 kb on - strand, within GFF948 at 949.033 kb on + strand, within GFF948 at 949.102 kb on - strand, within GFF948 at 949.102 kb on - strand, within GFF948 at 949.107 kb on - strand, within GFF948 at 949.109 kb on - strand, within GFF948 at 949.145 kb on + strand, within GFF948 at 949.164 kb on - strand, within GFF948 at 949.182 kb on + strand, within GFF948 at 949.299 kb on - strand, within GFF948 at 949.299 kb on - strand, within GFF948 at 949.299 kb on - strand, within GFF948 at 949.322 kb on + strand, within GFF948 at 949.361 kb on + strand, within GFF948 at 949.369 kb on - strand, within GFF948 at 949.396 kb on - strand, within GFF948 at 949.455 kb on + strand, within GFF948 at 949.492 kb on + strand at 949.492 kb on + strand at 949.492 kb on + strand at 949.492 kb on + strand at 949.500 kb on - strand at 949.500 kb on - strand at 949.500 kb on - strand at 949.500 kb on - strand at 949.511 kb on + strand at 949.525 kb on - strand at 949.526 kb on - strand at 949.527 kb on + strand at 949.527 kb on + strand at 949.533 kb on + strand at 949.546 kb on + strand at 949.569 kb on - strand at 949.575 kb on - strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.582 kb on + strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.590 kb on - strand at 949.625 kb on - strand at 949.666 kb on + strand at 949.774 kb on - strand, within GFF949 at 949.802 kb on - strand, within GFF949 at 949.836 kb on + strand, within GFF949 at 949.847 kb on + strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.855 kb on - strand, within GFF949 at 949.877 kb on + strand, within GFF949 at 949.877 kb on + strand, within GFF949 at 949.879 kb on + strand, within GFF949 at 949.885 kb on - strand, within GFF949 at 949.885 kb on - strand, within GFF949 at 949.912 kb on + strand, within GFF949 at 949.919 kb on - strand, within GFF949 at 949.919 kb on - strand, within GFF949 at 949.926 kb on - strand, within GFF949 at 949.946 kb on + strand, within GFF949 at 950.013 kb on + strand, within GFF949 at 950.013 kb on + strand, within GFF949 at 950.021 kb on - strand, within GFF949 at 950.021 kb on - strand, within GFF949 at 950.021 kb on - strand, within GFF949 at 950.023 kb on + strand, within GFF949 at 950.059 kb on - strand, within GFF949 at 950.082 kb on + strand, within GFF949 at 950.083 kb on + strand, within GFF949 at 950.090 kb on - strand, within GFF949 at 950.126 kb on - strand, within GFF949 at 950.145 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.193 kb on - strand, within GFF949 at 950.204 kb on - strand, within GFF949 at 950.225 kb on - strand, within GFF949 at 950.249 kb on + strand, within GFF949 at 950.268 kb on + strand, within GFF949 at 950.276 kb on - strand, within GFF949 at 950.276 kb on - strand, within GFF949 at 950.276 kb on - strand, within GFF949 at 950.286 kb on + strand, within GFF949 at 950.319 kb on + strand, within GFF949 at 950.325 kb on - strand, within GFF949 at 950.432 kb on + strand, within GFF949 at 950.450 kb on - strand, within GFF949 at 950.455 kb on - strand, within GFF949 at 950.455 kb on - strand, within GFF949 at 950.478 kb on - strand, within GFF949 at 950.479 kb on - strand, within GFF949 at 950.486 kb on + strand, within GFF949 at 950.501 kb on + strand, within GFF949 at 950.506 kb on + strand, within GFF949 at 950.529 kb on - strand, within GFF949 at 950.547 kb on + strand, within GFF949 at 950.565 kb on + strand, within GFF949 at 950.595 kb on - strand, within GFF949 at 950.601 kb on + strand, within GFF949 at 950.609 kb on + strand, within GFF949 at 950.609 kb on - strand, within GFF949 at 950.632 kb on - strand at 950.632 kb on - strand at 950.634 kb on + strand at 950.634 kb on + strand at 950.634 kb on + strand at 950.634 kb on + strand at 950.636 kb on + strand at 950.642 kb on - strand at 950.644 kb on - strand at 950.655 kb on + strand at 950.655 kb on + strand at 950.663 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.697 kb on - strand at 950.703 kb on + strand at 950.704 kb on + strand at 950.713 kb on - strand at 950.726 kb on + strand at 950.744 kb on - strand at 950.744 kb on - strand at 950.755 kb on - strand at 950.914 kb on + strand, within GFF950 at 950.922 kb on - strand, within GFF950 at 950.922 kb on - strand, within GFF950 at 950.938 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.961 kb on + strand, within GFF950 at 950.968 kb on - strand, within GFF950 at 950.995 kb on - strand, within GFF950 at 950.999 kb on + strand, within GFF950 at 951.007 kb on - strand, within GFF950 at 951.040 kb on + strand at 951.048 kb on - strand at 951.053 kb on - strand at 951.059 kb on - strand at 951.072 kb on + strand at 951.078 kb on + strand at 951.160 kb on - strand, within GFF951 at 951.160 kb on - strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.162 kb on + strand, within GFF951 at 951.165 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.170 kb on - strand, within GFF951 at 951.210 kb on - strand, within GFF951 at 951.260 kb on - strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.316 kb on + strand, within GFF951 at 951.319 kb on - strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.321 kb on + strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.324 kb on - strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.326 kb on + strand, within GFF951 at 951.329 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.334 kb on - strand, within GFF951 at 951.350 kb on + strand, within GFF951 at 951.350 kb on + strand, within GFF951 at 951.360 kb on + strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.368 kb on - strand, within GFF951 at 951.396 kb on + strand, within GFF951 at 951.411 kb on - strand, within GFF951 at 951.442 kb on + strand, within GFF951 at 951.445 kb on - strand, within GFF951 at 951.452 kb on + strand, within GFF951 at 951.475 kb on + strand, within GFF951 at 951.480 kb on + strand, within GFF951 at 951.483 kb on - strand, within GFF951 at 951.561 kb on - strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.578 kb on + strand, within GFF951 at 951.596 kb on - strand, within GFF951 at 951.640 kb on - strand, within GFF951 at 951.642 kb on + strand, within GFF951 at 951.681 kb on + strand, within GFF951 at 951.682 kb on + strand, within GFF951 at 951.707 kb on + strand, within GFF951 at 951.715 kb on - strand, within GFF951 at 951.715 kb on - strand, within GFF951 at 951.731 kb on + strand, within GFF951
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 948,666 + GFF948 0.31 -0.6 948,674 - GFF948 0.32 +0.3 948,690 + GFF948 0.33 -0.4 948,690 + GFF948 0.33 -1.2 948,690 + GFF948 0.33 -0.5 948,698 - GFF948 0.33 -1.0 948,698 - GFF948 0.33 -0.4 948,725 - GFF948 0.35 -0.8 948,733 + GFF948 0.36 -1.8 948,744 - GFF948 0.37 -0.7 948,744 - GFF948 0.37 -0.5 948,746 - GFF948 0.37 -0.8 948,773 - GFF948 0.39 -0.3 948,782 + GFF948 0.39 -1.5 948,788 - GFF948 0.40 -0.6 948,823 + GFF948 0.42 -0.3 948,860 - GFF948 0.45 +0.9 948,884 - GFF948 0.47 +0.5 948,885 - GFF948 0.47 +0.4 948,927 - GFF948 0.50 -0.0 948,982 - GFF948 0.54 +1.0 948,998 - GFF948 0.55 -0.7 948,998 - GFF948 0.55 -0.3 949,033 + GFF948 0.58 -0.7 949,102 - GFF948 0.63 -0.5 949,102 - GFF948 0.63 +1.7 949,107 - GFF948 0.63 +0.3 949,109 - GFF948 0.63 +0.3 949,145 + GFF948 0.66 +0.6 949,164 - GFF948 0.67 -0.0 949,182 + GFF948 0.69 -0.9 949,299 - GFF948 0.77 -0.5 949,299 - GFF948 0.77 -1.3 949,299 - GFF948 0.77 -0.9 949,322 + GFF948 0.79 -0.5 949,361 + GFF948 0.82 -0.9 949,369 - GFF948 0.82 -0.3 949,396 - GFF948 0.84 -1.0 949,455 + GFF948 0.89 +0.5 949,492 + -1.5 949,492 + -0.5 949,492 + +0.7 949,492 + -1.0 949,500 - -0.4 949,500 - -0.5 949,500 - -0.5 949,500 - +0.4 949,511 + -1.4 949,525 - +1.1 949,526 - -0.9 949,527 + -1.9 949,527 + +0.3 949,533 + -0.4 949,546 + -0.7 949,569 - -1.3 949,575 - -0.2 949,582 + -0.5 949,582 + -1.9 949,582 + -0.4 949,582 + +0.4 949,582 + -0.8 949,582 + +0.0 949,582 + -0.0 949,582 + -0.5 949,582 + -0.8 949,582 + +0.3 949,582 + -1.8 949,582 + -0.2 949,582 + +0.3 949,582 + -0.3 949,582 + -2.1 949,582 + -0.2 949,590 - -1.5 949,590 - -1.1 949,590 - -0.2 949,590 - -0.6 949,590 - +0.4 949,590 - -0.8 949,590 - -0.4 949,590 - -1.4 949,590 - -1.0 949,590 - -1.0 949,590 - +0.0 949,590 - -1.5 949,590 - -2.0 949,590 - +0.4 949,590 - -0.7 949,590 - -1.5 949,590 - -0.3 949,590 - -0.6 949,590 - -1.5 949,590 - -0.3 949,590 - +1.2 949,625 - +0.1 949,666 + -0.7 949,774 - GFF949 0.15 +1.5 949,802 - GFF949 0.17 -0.5 949,836 + GFF949 0.20 -0.6 949,847 + GFF949 0.21 +0.1 949,855 - GFF949 0.22 -1.3 949,855 - GFF949 0.22 -0.3 949,855 - GFF949 0.22 -0.8 949,855 - GFF949 0.22 -0.6 949,877 + GFF949 0.24 -1.2 949,877 + GFF949 0.24 -1.1 949,879 + GFF949 0.24 +0.4 949,885 - GFF949 0.25 -0.7 949,885 - GFF949 0.25 -1.1 949,912 + GFF949 0.27 -0.4 949,919 - GFF949 0.28 -0.7 949,919 - GFF949 0.28 -1.3 949,926 - GFF949 0.28 -0.6 949,946 + GFF949 0.30 -1.6 950,013 + GFF949 0.36 +0.1 950,013 + GFF949 0.36 +0.1 950,021 - GFF949 0.37 +0.1 950,021 - GFF949 0.37 -0.0 950,021 - GFF949 0.37 -0.8 950,023 + GFF949 0.37 +0.5 950,059 - GFF949 0.40 -0.5 950,082 + GFF949 0.42 +0.1 950,083 + GFF949 0.42 -2.1 950,090 - GFF949 0.43 -0.9 950,126 - GFF949 0.46 +0.6 950,145 - GFF949 0.48 -0.4 950,193 - GFF949 0.52 -0.7 950,193 - GFF949 0.52 +1.0 950,193 - GFF949 0.52 -1.3 950,204 - GFF949 0.53 -1.2 950,225 - GFF949 0.55 -0.4 950,249 + GFF949 0.57 -1.5 950,268 + GFF949 0.59 +1.1 950,276 - GFF949 0.59 -1.5 950,276 - GFF949 0.59 +0.5 950,276 - GFF949 0.59 +0.8 950,286 + GFF949 0.60 -1.2 950,319 + GFF949 0.63 -0.6 950,325 - GFF949 0.64 -0.4 950,432 + GFF949 0.73 -1.6 950,450 - GFF949 0.75 -0.5 950,455 - GFF949 0.75 -0.1 950,455 - GFF949 0.75 -0.7 950,478 - GFF949 0.77 -0.9 950,479 - GFF949 0.77 -1.1 950,486 + GFF949 0.78 -0.6 950,501 + GFF949 0.79 +0.1 950,506 + GFF949 0.80 -0.7 950,529 - GFF949 0.82 -0.7 950,547 + GFF949 0.83 +1.0 950,565 + GFF949 0.85 -0.5 950,595 - GFF949 0.88 +0.1 950,601 + GFF949 0.88 -0.9 950,609 + GFF949 0.89 -0.4 950,609 - GFF949 0.89 -0.0 950,632 - -1.0 950,632 - -2.3 950,634 + +0.6 950,634 + -1.6 950,634 + -0.7 950,634 + -0.6 950,636 + -1.9 950,642 - -0.1 950,644 - -0.6 950,655 + -0.5 950,655 + +0.6 950,663 - -0.8 950,697 - -0.5 950,697 - -0.4 950,697 - -0.3 950,697 - -0.5 950,703 + -0.5 950,704 + -1.0 950,713 - +0.4 950,726 + +1.0 950,744 - -0.6 950,744 - +0.7 950,755 - -0.2 950,914 + GFF950 0.54 +0.1 950,922 - GFF950 0.56 -0.6 950,922 - GFF950 0.56 +0.3 950,938 + GFF950 0.62 +0.5 950,961 + GFF950 0.70 -0.0 950,961 + GFF950 0.70 +0.4 950,961 + GFF950 0.70 +2.2 950,961 + GFF950 0.70 -0.8 950,968 - GFF950 0.72 -0.4 950,995 - GFF950 0.81 +0.4 950,999 + GFF950 0.83 +0.4 951,007 - GFF950 0.85 -1.3 951,040 + -0.6 951,048 - +1.0 951,053 - -1.3 951,059 - +0.7 951,072 + -0.6 951,078 + -0.4 951,160 - GFF951 0.13 -0.1 951,160 - GFF951 0.13 -0.5 951,162 + GFF951 0.13 -1.3 951,162 + GFF951 0.13 -1.7 951,162 + GFF951 0.13 -0.9 951,162 + GFF951 0.13 -0.7 951,162 + GFF951 0.13 -0.4 951,162 + GFF951 0.13 -0.7 951,162 + GFF951 0.13 -0.4 951,165 - GFF951 0.13 -0.6 951,170 - GFF951 0.14 -1.0 951,170 - GFF951 0.14 -0.7 951,170 - GFF951 0.14 -0.5 951,170 - GFF951 0.14 -0.6 951,210 - GFF951 0.19 +0.5 951,260 - GFF951 0.25 -0.6 951,316 + GFF951 0.32 -0.7 951,316 + GFF951 0.32 -0.4 951,316 + GFF951 0.32 +0.3 951,319 - GFF951 0.32 -0.2 951,321 + GFF951 0.32 -0.8 951,321 + GFF951 0.32 +0.6 951,321 + GFF951 0.32 -0.4 951,321 + GFF951 0.32 +0.3 951,324 - GFF951 0.32 -0.7 951,324 - GFF951 0.32 -0.9 951,324 - GFF951 0.32 +0.5 951,324 - GFF951 0.32 -0.9 951,324 - GFF951 0.32 -0.4 951,326 + GFF951 0.33 +0.7 951,326 + GFF951 0.33 -0.6 951,326 + GFF951 0.33 -0.9 951,326 + GFF951 0.33 +0.7 951,326 + GFF951 0.33 +0.8 951,326 + GFF951 0.33 +0.2 951,329 - GFF951 0.33 -0.5 951,334 - GFF951 0.34 -0.6 951,334 - GFF951 0.34 -0.4 951,334 - GFF951 0.34 -0.5 951,350 + GFF951 0.36 -0.4 951,350 + GFF951 0.36 -0.6 951,360 + GFF951 0.37 -0.7 951,368 - GFF951 0.38 -0.7 951,368 - GFF951 0.38 -1.5 951,368 - GFF951 0.38 -0.5 951,396 + GFF951 0.41 -0.6 951,411 - GFF951 0.43 -1.3 951,442 + GFF951 0.47 -1.2 951,445 - GFF951 0.47 -0.0 951,452 + GFF951 0.48 -0.3 951,475 + GFF951 0.51 -0.2 951,480 + GFF951 0.51 +0.4 951,483 - GFF951 0.52 +0.2 951,561 - GFF951 0.61 -1.5 951,578 + GFF951 0.63 +0.5 951,578 + GFF951 0.63 -0.8 951,578 + GFF951 0.63 -2.0 951,596 - GFF951 0.65 -1.0 951,640 - GFF951 0.71 -0.4 951,642 + GFF951 0.71 -1.3 951,681 + GFF951 0.76 +1.1 951,682 + GFF951 0.76 -1.2 951,707 + GFF951 0.79 +0.5 951,715 - GFF951 0.80 -0.2 951,715 - GFF951 0.80 -0.6 951,731 + GFF951 0.82 +1.5
Or see this region's nucleotide sequence