Strain Fitness in Sphingobium sp. HT1-2 around GFF943

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
937,296	-		GFF941	0.80	-0.6
937,297	-		GFF941	0.80	-1.3
937,300	+		GFF941	0.80	+0.1
937,302	-		GFF941	0.80	-0.5
937,321	-		GFF941	0.81	-0.8
937,357	+		GFF941	0.83	-0.6
937,357	+		GFF941	0.83	-0.8
937,357	+		GFF941	0.83	-0.7
937,357	+		GFF941	0.83	-0.7
937,357	+		GFF941	0.83	+0.8
937,357	+		GFF941	0.83	-0.2
937,365	-		GFF941	0.83	+0.3
937,365	-		GFF941	0.83	-0.0
937,365	-		GFF941	0.83	-0.3
937,378	+		GFF941	0.84	-0.2
937,378	+		GFF941	0.84	-0.4
937,386	-		GFF941	0.84	+0.3
937,394	+		GFF941	0.85	-0.0
937,394	+		GFF941	0.85	+1.0
937,394	+		GFF941	0.85	-0.0
937,401	+		GFF941	0.85	-0.6
937,409	-		GFF941	0.86	-1.7
937,449	+		GFF941	0.88	-0.7
937,509	+				+0.1
937,513	+				+0.5
937,517	-				-0.2
937,521	+				-1.9
937,521	+				+0.6
937,529	-				-1.2
937,529	-				+0.0
937,556	+				-0.4
937,561	+				-0.2
937,564	-				-0.5
937,602	+				-1.6
937,602	+				+1.2
937,602	+				-0.7
937,602	+				-1.0
937,617	+				-0.9
937,698	+				-0.3
937,698	+				+0.3
937,700	-				+0.3
937,706	-				+0.4
937,719	+				+0.1
937,721	+				+0.0
937,731	+				+0.3
937,739	-				+0.0
937,753	+				+1.6
937,753	+				-0.5
937,753	+				-0.8
937,753	+				+2.2
937,761	-				-0.2
937,761	-				-1.8
937,761	-				+0.5
937,763	+				-0.4
937,764	+				-1.4
937,796	-				-1.0
937,806	+				-1.4
937,806	+				-0.4
937,806	+				-0.0
937,814	-				-2.0
937,816	-				-1.6
937,831	+				-0.2
937,837	+				-0.9
937,844	+				-0.0
937,845	-				-1.2
937,847	-				+0.5
937,852	-				+0.2
937,852	-				+0.5
937,852	-				-0.5
937,852	-				-0.1
937,852	-				-1.0
937,852	-				-1.2
937,852	-				-0.7
937,854	+				-1.4
937,871	+				+0.5
937,877	+				+1.4
937,904	-				+0.4
937,916	+				+0.8
937,933	+				-0.2
937,953	+				-1.3
937,953	+				+0.0
937,953	+				+0.4
937,953	+				-0.7
937,958	+				-2.0
937,958	+				+0.1
937,958	+				-0.6
937,958	+				-0.5
937,958	+				-0.5
937,958	-				-1.4
937,961	-				-1.4
937,961	-				+0.3
937,961	-				-1.3
937,963	+				-0.7
937,966	-				+0.1
937,966	-				-0.8
937,966	-				-1.6
937,970	+				+0.6
937,971	+				+1.1
937,992	+		GFF942	0.14	-0.2
937,997	+		GFF942	0.15	-1.4
938,005	-		GFF942	0.18	+1.2
938,012	-		GFF942	0.21	-0.9
938,012	-		GFF942	0.21	-1.8
938,012	-		GFF942	0.21	+1.2
938,045	+		GFF942	0.32	+0.4
938,045	+		GFF942	0.32	-2.1
938,076	-		GFF942	0.43	+0.3
938,106	+		GFF942	0.54	-1.4
938,118	+		GFF942	0.58	-0.0
938,118	+		GFF942	0.58	+0.3
938,118	+		GFF942	0.58	+0.9
938,126	-		GFF942	0.61	-1.0
938,126	-		GFF942	0.61	-2.1
938,126	-		GFF942	0.61	-0.7
938,128	-		GFF942	0.61	-1.4
938,131	+		GFF942	0.62	-2.3
938,136	-		GFF942	0.64	-0.7
938,141	+		GFF942	0.66	+1.2
938,149	-		GFF942	0.69	-2.3
938,158	-		GFF942	0.72	-0.7
938,201	-		GFF942	0.87	+1.2
938,218	-				-1.6
938,231	+				-1.9
938,231	+				-1.5
938,231	+				-0.4
938,231	+				+0.7
938,231	+				+1.5
938,231	+				-2.5
938,239	-				-1.9
938,239	-				+1.1
938,239	-				-1.0
938,239	-				-0.6
938,239	-				-0.6
938,239	-				+0.9
938,239	-				-1.0
938,239	-				-0.1
938,239	-				-0.6
938,239	-				-0.3
938,239	-				-0.5
938,239	-				-0.2
938,239	-				-1.5
938,241	+				-0.2
938,249	-				-1.2
938,249	-				+0.3
938,279	+				-0.6
938,289	+				-1.6
938,297	-				-0.7
938,297	-				-0.2
938,310	-				+0.6
938,317	+				-0.8
938,317	+				-0.9
938,317	+				-0.7
938,325	-				+0.4
938,325	-				-0.4
938,325	-				-0.7
938,325	-				-1.2
938,333	+				-1.9
938,342	+				+0.6
938,347	+				-1.9
938,354	+				+0.9
938,354	+				-2.0
938,354	+				-0.3
938,354	+				-0.6
938,354	+				-0.6
938,354	+				+0.7
938,354	+				+1.3
938,354	+				+0.4
938,355	-				+0.8
938,355	-				+1.3
938,355	-				+0.3
938,355	-				-0.7
938,359	+				-1.4
938,359	+				-0.9
938,359	+				+0.0
938,359	+				+0.0
938,359	+				+0.9
938,359	+				+0.3
938,359	+				-1.2
938,362	-				-0.9
938,362	-				+0.6
938,367	-				-1.3
938,367	-				-0.2
938,367	-				-0.5
938,367	-				-2.0
938,367	-				-0.3
938,382	-				-0.2
938,383	+				-0.6
938,383	+				-1.7
938,383	+				+1.1
938,384	-				-1.2
938,386	-				+0.7
938,391	-				+0.4
938,396	+				+1.0
938,418	+				+0.3
938,418	+				-0.2
938,418	+				+0.8
938,426	-				+0.1
938,427	+				-0.7
938,454	-				+0.4
938,488	-		GFF943	0.10	-0.4
938,495	+		GFF943	0.10	-1.2
938,504	+		GFF943	0.11	-1.1
938,513	-		GFF943	0.11	-0.7
938,516	+		GFF943	0.11	-0.4
938,536	+		GFF943	0.12	-0.7
938,536	+		GFF943	0.12	-2.7
938,546	+		GFF943	0.13	-1.0
938,554	+		GFF943	0.13	-0.3
938,554	-		GFF943	0.13	+0.1
938,554	-		GFF943	0.13	-1.1
938,554	-		GFF943	0.13	-1.7
938,556	+		GFF943	0.13	-0.4
938,556	+		GFF943	0.13	-1.2
938,556	+		GFF943	0.13	+0.8
938,556	+		GFF943	0.13	+0.8
938,556	+		GFF943	0.13	+0.8
938,556	+		GFF943	0.13	-0.8
938,561	+		GFF943	0.14	-0.1
938,561	+		GFF943	0.14	-0.8
938,564	-		GFF943	0.14	-0.6
938,564	-		GFF943	0.14	-1.5
938,564	-		GFF943	0.14	+0.1
938,564	-		GFF943	0.14	-0.5
938,569	-		GFF943	0.14	-0.8
938,570	-		GFF943	0.14	-0.3
938,611	-		GFF943	0.16	-0.4
938,613	+		GFF943	0.16	-1.0
938,614	+		GFF943	0.16	-0.4
938,628	+		GFF943	0.17	-1.2
938,628	+		GFF943	0.17	-0.1
938,633	+		GFF943	0.17	+0.6
938,633	+		GFF943	0.17	-0.3
938,633	+		GFF943	0.17	+0.6
938,633	+		GFF943	0.17	-1.7
938,633	+		GFF943	0.17	-0.2
938,633	+		GFF943	0.17	-0.7
938,633	+		GFF943	0.17	+0.7
938,636	-		GFF943	0.17	+0.6
938,641	-		GFF943	0.18	-0.6
938,641	-		GFF943	0.18	-2.1
938,641	-		GFF943	0.18	-0.7
938,646	+		GFF943	0.18	-1.2
938,647	+		GFF943	0.18	+0.3
938,648	+		GFF943	0.18	-0.1
938,658	+		GFF943	0.18	-2.0
938,666	-		GFF943	0.19	-1.0
938,683	+		GFF943	0.20	-1.2
938,683	+		GFF943	0.20	-1.1
938,683	+		GFF943	0.20	-1.7
938,691	-		GFF943	0.20	+0.6
938,714	+		GFF943	0.21	-1.0
938,734	+		GFF943	0.22	-0.7
938,749	+		GFF943	0.23	-0.5
938,749	+		GFF943	0.23	-0.4
938,757	-		GFF943	0.23	-0.9
938,757	-		GFF943	0.23	-0.7
938,757	-		GFF943	0.23	-2.7
938,784	-		GFF943	0.24	+0.3
938,785	+		GFF943	0.24	-0.4
938,785	+		GFF943	0.24	-0.4
938,803	-		GFF943	0.25	+1.3
938,815	-		GFF943	0.26	+1.4
938,825	+		GFF943	0.26	-0.5
938,826	+		GFF943	0.26	-0.8
938,830	+		GFF943	0.27	-0.5
938,830	+		GFF943	0.27	-1.1
938,831	+		GFF943	0.27	+0.1
938,838	-		GFF943	0.27	+1.4
938,838	-		GFF943	0.27	-1.1
938,841	-		GFF943	0.27	-0.9
938,871	-		GFF943	0.29	-0.2
938,871	-		GFF943	0.29	+1.1
938,871	-		GFF943	0.29	-0.5
938,871	-		GFF943	0.29	+1.1
938,891	-		GFF943	0.30	-0.4
938,895	-		GFF943	0.30	+1.0
938,914	-		GFF943	0.31	-1.1
938,943	+		GFF943	0.32	+0.3
938,943	+		GFF943	0.32	+1.1
938,945	+		GFF943	0.32	-1.2
938,951	-		GFF943	0.32	-1.3
938,967	+		GFF943	0.33	+0.5
938,969	+		GFF943	0.33	-1.2
938,969	+		GFF943	0.33	-0.7
938,969	+		GFF943	0.33	-0.9
938,977	-		GFF943	0.34	-0.8
938,977	-		GFF943	0.34	-0.6
938,977	-		GFF943	0.34	-1.7
938,980	+		GFF943	0.34	-1.3
938,982	-		GFF943	0.34	+1.2
938,982	-		GFF943	0.34	+1.0
938,990	+		GFF943	0.34	-1.2
938,995	+		GFF943	0.35	+0.5
938,995	+		GFF943	0.35	+0.8
938,998	-		GFF943	0.35	+1.5
939,000	+		GFF943	0.35	+0.6
939,000	+		GFF943	0.35	-0.7
939,003	-		GFF943	0.35	-1.9
939,005	+		GFF943	0.35	-1.5
939,008	-		GFF943	0.35	+0.3
939,042	-		GFF943	0.37	+0.9
939,059	-		GFF943	0.38	-0.3
939,065	+		GFF943	0.38	-0.4
939,078	+		GFF943	0.39	-0.9
939,079	+		GFF943	0.39	-1.4
939,087	-		GFF943	0.39	+0.2
939,119	+		GFF943	0.41	+0.4
939,119	+		GFF943	0.41	-0.8
939,119	+		GFF943	0.41	-0.2
939,119	+		GFF943	0.41	-0.4
939,119	+		GFF943	0.41	-1.2
939,127	-		GFF943	0.41	-1.5
939,127	-		GFF943	0.41	-0.3
939,138	+		GFF943	0.41	-2.0
939,138	+		GFF943	0.41	+0.4
939,141	-		GFF943	0.42	-2.2
939,141	-		GFF943	0.42	-0.4
939,144	+		GFF943	0.42	+0.6
939,146	-		GFF943	0.42	-2.3
939,146	-		GFF943	0.42	-1.2
939,152	-		GFF943	0.42	-0.8
939,152	-		GFF943	0.42	-0.7
939,159	+		GFF943	0.42	+0.1
939,167	-		GFF943	0.43	+0.6
939,169	+		GFF943	0.43	+0.4
939,172	-		GFF943	0.43	-0.4
939,175	+		GFF943	0.43	-1.1
939,183	+		GFF943	0.44	-0.5
939,193	+		GFF943	0.44	-0.7
939,195	+		GFF943	0.44	-0.6
939,195	+		GFF943	0.44	-0.4
939,196	-		GFF943	0.44	+0.6
939,212	+		GFF943	0.45	-1.2
939,212	+		GFF943	0.45	-1.3
939,212	+		GFF943	0.45	-0.4
939,220	-		GFF943	0.45	-0.9
939,220	-		GFF943	0.45	-0.5
939,221	-		GFF943	0.45	+0.3
939,235	-		GFF943	0.46	-2.8
939,244	+		GFF943	0.47	+0.2
939,252	-		GFF943	0.47	-1.5
939,270	-		GFF943	0.48	+1.2
939,305	+		GFF943	0.49	-0.3
939,313	-		GFF943	0.50	+1.9
939,322	+		GFF943	0.50	-0.5
939,323	-		GFF943	0.50	-1.3
939,332	-		GFF943	0.51	+0.3
939,347	+		GFF943	0.51	-1.2
939,352	+		GFF943	0.52	-1.1
939,356	-		GFF943	0.52	-0.3
939,360	-		GFF943	0.52	-0.9
939,379	-		GFF943	0.53	-1.5
939,399	-		GFF943	0.54	+0.8
939,399	-		GFF943	0.54	+0.7
939,437	+		GFF943	0.56	-2.0
939,438	+		GFF943	0.56	+0.6
939,451	+		GFF943	0.56	-0.4
939,452	+		GFF943	0.57	+0.3
939,454	-		GFF943	0.57	+0.7
939,457	+		GFF943	0.57	+0.4
939,465	-		GFF943	0.57	-1.5
939,510	+		GFF943	0.59	+1.6
939,511	-		GFF943	0.59	-0.5
939,514	+		GFF943	0.59	+0.3
939,514	+		GFF943	0.59	-0.4
939,514	+		GFF943	0.59	-0.5
939,515	+		GFF943	0.60	-1.3
939,522	-		GFF943	0.60	-1.8
939,523	-		GFF943	0.60	-0.2
939,523	-		GFF943	0.60	-0.9
939,523	-		GFF943	0.60	-0.4
939,523	-		GFF943	0.60	-1.7
939,523	-		GFF943	0.60	-0.7
939,525	+		GFF943	0.60	-0.7
939,528	-		GFF943	0.60	-0.2
939,528	-		GFF943	0.60	-0.1
939,530	+		GFF943	0.60	-0.0
939,530	+		GFF943	0.60	+0.7
939,530	+		GFF943	0.60	-0.9
939,530	+		GFF943	0.60	-0.4
939,530	+		GFF943	0.60	-1.1
939,530	+		GFF943	0.60	-1.2
939,530	+		GFF943	0.60	-1.0
939,530	+		GFF943	0.60	+1.0
939,530	+		GFF943	0.60	+0.0
939,530	+		GFF943	0.60	-0.7
939,530	+		GFF943	0.60	+0.3
939,530	+		GFF943	0.60	-0.2
939,530	+		GFF943	0.60	-0.8
939,530	+		GFF943	0.60	-1.9
939,530	+		GFF943	0.60	-1.4
939,530	+		GFF943	0.60	+0.6
939,530	+		GFF943	0.60	-0.6
939,530	+		GFF943	0.60	-0.9
939,533	-		GFF943	0.60	-1.5
939,533	-		GFF943	0.60	-1.7
939,535	+		GFF943	0.61	-1.8
939,538	-		GFF943	0.61	-0.8
939,538	-		GFF943	0.61	+0.0
939,538	-		GFF943	0.61	-1.2
939,538	-		GFF943	0.61	-1.1
939,538	-		GFF943	0.61	-0.9
939,538	-		GFF943	0.61	-0.7
939,538	-		GFF943	0.61	-0.4
939,538	-		GFF943	0.61	-0.2
939,538	-		GFF943	0.61	-0.9
939,538	-		GFF943	0.61	+0.4
939,538	-		GFF943	0.61	-0.7
939,538	-		GFF943	0.61	-0.8
939,538	-		GFF943	0.61	+0.4
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