Strain Fitness in Sphingobium sp. HT1-2 around GFF923

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
916,895	-				-0.2
916,899	-				-2.4
916,901	-				-0.7
916,907	-				+0.1
916,915	+				-0.7
916,915	+				-1.4
916,915	+				+1.2
916,915	+				+0.3
916,923	-				-0.9
916,923	-				-0.5
916,923	-				-1.7
916,923	-				+0.1
916,930	+				+0.7
916,930	+				+0.6
916,930	+				+0.7
916,938	-				-0.6
916,951	+				+1.0
916,951	+				-0.4
916,955	-				+0.6
916,959	-				-0.0
916,959	-				+0.8
916,959	-				-0.9
916,971	-				+0.3
916,983	+				-0.2
916,986	-				-0.7
916,986	-				+0.4
916,986	-				-1.1
916,986	-				+0.6
916,988	+				+0.0
916,991	-				+1.9
916,998	+				+0.8
917,023	+				+0.2
917,024	+				-0.8
917,045	-				-1.4
917,054	-				-0.5
917,088	-				+0.5
917,098	-				-1.1
917,099	-				+0.1
917,110	+				-0.4
917,110	+				+0.6
917,110	+				-1.7
917,111	-				-0.6
917,116	-				+0.4
917,118	-				+0.4
917,157	+				+1.0
917,159	+				+1.1
917,187	+		GFF922	0.11	+1.7
917,205	+		GFF922	0.14	+2.0
917,213	+		GFF922	0.15	+0.7
917,221	-		GFF922	0.16	-0.6
917,235	+		GFF922	0.18	-1.0
917,243	-		GFF922	0.19	+0.1
917,243	-		GFF922	0.19	-0.4
917,270	+		GFF922	0.22	-0.6
917,321	-		GFF922	0.29	-0.9
917,322	-		GFF922	0.29	-2.4
917,330	-		GFF922	0.30	-0.5
917,330	-		GFF922	0.30	-0.2
917,344	+		GFF922	0.32	+0.4
917,349	+		GFF922	0.32	-1.5
917,349	+		GFF922	0.32	-0.4
917,402	-		GFF922	0.39	-0.8
917,402	-		GFF922	0.39	+0.5
917,402	-		GFF922	0.39	+0.4
917,402	-		GFF922	0.39	+0.0
917,418	-		GFF922	0.41	+0.6
917,420	+		GFF922	0.41	+1.1
917,439	+		GFF922	0.44	-0.8
917,439	+		GFF922	0.44	-0.7
917,444	+		GFF922	0.44	+0.0
917,444	+		GFF922	0.44	+0.2
917,447	-		GFF922	0.45	-0.6
917,447	-		GFF922	0.45	+0.5
917,452	-		GFF922	0.45	+0.1
917,452	-		GFF922	0.45	+0.6
917,456	-		GFF922	0.46	-0.6
917,465	+		GFF922	0.47	+0.0
917,465	+		GFF922	0.47	+0.0
917,465	+		GFF922	0.47	-0.3
917,465	+		GFF922	0.47	-0.7
917,465	+		GFF922	0.47	-0.2
917,470	+		GFF922	0.48	-1.2
917,473	-		GFF922	0.48	-0.1
917,473	-		GFF922	0.48	-0.2
917,473	-		GFF922	0.48	+0.0
917,473	-		GFF922	0.48	-0.1
917,473	-		GFF922	0.48	+0.5
917,480	-		GFF922	0.49	-1.8
917,483	-		GFF922	0.49	+0.6
917,514	+		GFF922	0.53	-0.3
917,514	+		GFF922	0.53	+0.5
917,516	+		GFF922	0.54	+0.7
917,516	+		GFF922	0.54	-0.5
917,516	+		GFF922	0.54	-0.7
917,521	+		GFF922	0.54	-1.2
917,521	+		GFF922	0.54	-0.4
917,521	+		GFF922	0.54	+0.3
917,521	+		GFF922	0.54	+0.7
917,522	-		GFF922	0.54	+1.2
917,522	-		GFF922	0.54	-1.5
917,524	-		GFF922	0.55	+1.2
917,524	-		GFF922	0.55	+0.1
917,524	-		GFF922	0.55	+0.3
917,529	-		GFF922	0.55	-0.1
917,529	-		GFF922	0.55	-1.4
917,529	-		GFF922	0.55	+0.5
917,529	-		GFF922	0.55	+0.4
917,533	+		GFF922	0.56	-0.4
917,533	+		GFF922	0.56	-0.9
917,541	-		GFF922	0.57	-0.4
917,573	+		GFF922	0.61	-1.3
917,581	-		GFF922	0.62	-0.0
917,589	+		GFF922	0.63	+1.4
917,589	+		GFF922	0.63	+0.5
917,589	+		GFF922	0.63	-0.8
917,595	-		GFF922	0.64	+0.6
917,597	-		GFF922	0.64	-0.2
917,597	-		GFF922	0.64	-0.8
917,599	+		GFF922	0.64	-0.3
917,599	+		GFF922	0.64	-0.6
917,606	-		GFF922	0.65	+0.3
917,608	-		GFF922	0.65	+0.0
917,618	-		GFF922	0.67	-0.4
917,648	-		GFF922	0.71	+0.5
917,658	+		GFF922	0.72	+0.6
917,673	-		GFF922	0.74	-0.4
917,684	+		GFF922	0.75	-1.2
917,684	+		GFF922	0.75	-0.3
917,684	+		GFF922	0.75	+0.1
917,684	+		GFF922	0.75	+0.4
917,684	+		GFF922	0.75	-0.5
917,684	+		GFF922	0.75	-1.4
917,692	-		GFF922	0.76	-1.3
917,692	-		GFF922	0.76	+0.6
917,692	-		GFF922	0.76	-0.4
917,692	-		GFF922	0.76	-2.3
917,694	-		GFF922	0.76	-0.5
917,701	+		GFF922	0.77	-0.9
917,701	+		GFF922	0.77	-0.9
917,701	+		GFF922	0.77	-1.2
917,701	+		GFF922	0.77	-0.8
917,701	+		GFF922	0.77	-1.5
917,701	+		GFF922	0.77	+0.4
917,701	+		GFF922	0.77	+0.2
917,701	+		GFF922	0.77	+0.9
917,701	+		GFF922	0.77	-1.2
917,701	+		GFF922	0.77	-1.0
917,701	+		GFF922	0.77	+0.6
917,701	+		GFF922	0.77	+0.7
917,701	+		GFF922	0.77	+1.0
917,701	+		GFF922	0.77	+0.9
917,706	+		GFF922	0.78	-1.4
917,706	+		GFF922	0.78	-0.1
917,706	+		GFF922	0.78	-1.3
917,706	+		GFF922	0.78	+0.5
917,706	+		GFF922	0.78	-2.4
917,706	+		GFF922	0.78	-1.4
917,706	+		GFF922	0.78	-0.2
917,709	-		GFF922	0.78	+0.5
917,709	-		GFF922	0.78	-1.7
917,709	-		GFF922	0.78	-0.5
917,709	-		GFF922	0.78	-0.4
917,709	-		GFF922	0.78	+0.2
917,709	-		GFF922	0.78	+0.5
917,709	-		GFF922	0.78	-2.7
917,709	-		GFF922	0.78	-0.3
917,709	-		GFF922	0.78	-2.3
917,714	-		GFF922	0.79	-0.7
917,714	-		GFF922	0.79	-2.1
917,714	-		GFF922	0.79	+0.8
917,714	-		GFF922	0.79	+0.4
917,714	-		GFF922	0.79	+0.9
917,714	-		GFF922	0.79	+0.2
917,722	+		GFF922	0.80	-2.1
917,740	-		GFF922	0.82	-1.9
917,743	+		GFF922	0.83	+0.2
917,743	+		GFF922	0.83	-0.8
917,743	+		GFF922	0.83	+1.6
917,751	-		GFF922	0.84	+0.1
917,755	+		GFF922	0.84	+0.2
917,763	-		GFF922	0.85	+0.0
917,768	-		GFF922	0.86	+1.0
917,769	-		GFF922	0.86	+1.6
917,779	+		GFF922	0.87	-0.7
917,779	+		GFF922	0.87	+0.1
917,779	+		GFF922	0.87	-0.9
917,779	+		GFF922	0.87	-0.3
917,779	+		GFF922	0.87	-0.7
917,779	+		GFF922	0.87	+0.1
917,780	-		GFF922	0.87	+0.3
917,781	-		GFF922	0.88	-1.7
917,786	+		GFF922	0.88	+0.1
917,786	+		GFF922	0.88	-1.7
917,786	+		GFF922	0.88	+0.5
917,787	-		GFF922	0.88	-0.4
917,787	-		GFF922	0.88	-0.4
917,787	-		GFF922	0.88	+0.7
917,787	-		GFF922	0.88	+0.2
917,787	-		GFF922	0.88	-1.0
917,787	-		GFF922	0.88	+0.9
917,787	-		GFF922	0.88	-1.6
917,787	-		GFF922	0.88	+0.2
917,787	-		GFF922	0.88	+0.9
917,794	-		GFF922	0.89	-0.8
917,794	-		GFF922	0.89	+1.2
917,796	+		GFF922	0.89	-0.2
917,796	+		GFF922	0.89	-1.4
917,796	+		GFF922	0.89	-0.6
917,796	+		GFF922	0.89	-1.8
917,796	+		GFF922	0.89	-1.4
917,804	-				-0.9
917,804	-				-1.2
917,804	-				-0.3
917,809	-				-0.2
917,825	-				-1.3
917,848	-				-0.9
917,853	-				+0.6
917,853	-				+0.3
917,853	-				-0.5
917,861	+				+0.1
917,869	-				-0.4
917,875	+				+0.4
917,876	-				+0.5
917,880	+				+0.7
917,884	+				-0.8
917,885	-				-0.9
917,885	-				-0.4
917,889	+				-0.4
917,889	+				+0.0
917,906	-				+0.7
917,906	-				+0.9
917,907	-				+0.2
917,913	+				-1.2
917,913	+				+0.6
917,913	+				-0.4
917,913	+				-0.5
917,921	-				-0.3
917,921	-				-0.7
917,921	-				-0.9
917,921	-				+0.5
917,921	-				-0.4
917,931	+				-0.9
917,954	+				-2.2
917,962	-				-0.5
917,976	+				+0.1
917,976	+				-0.2
917,984	-				-0.1
918,025	+		GFF923	0.12	+0.6
918,033	+		GFF923	0.12	+0.2
918,035	+		GFF923	0.13	-2.0
918,035	+		GFF923	0.13	-0.8
918,043	-		GFF923	0.13	-0.8
918,048	-		GFF923	0.14	+0.5
918,048	-		GFF923	0.14	-1.2
918,048	-		GFF923	0.14	-1.2
918,048	-		GFF923	0.14	-1.0
918,048	-		GFF923	0.14	+0.8
918,048	-		GFF923	0.14	+1.2
918,048	-		GFF923	0.14	-1.6
918,049	+		GFF923	0.14	+0.9
918,059	+		GFF923	0.15	+0.5
918,060	+		GFF923	0.15	+0.8
918,067	-		GFF923	0.15	+0.1
918,067	-		GFF923	0.15	+0.8
918,067	-		GFF923	0.15	-1.2
918,074	+		GFF923	0.16	+0.2
918,090	-		GFF923	0.17	-1.2
918,131	-		GFF923	0.20	+0.4
918,154	+		GFF923	0.22	-1.1
918,172	+		GFF923	0.24	+0.1
918,176	+		GFF923	0.24	-0.4
918,180	+		GFF923	0.24	+0.4
918,184	-		GFF923	0.25	+0.3
918,200	+		GFF923	0.26	-1.2
918,200	+		GFF923	0.26	-0.4
918,205	+		GFF923	0.26	-0.8
918,205	+		GFF923	0.26	-2.1
918,205	+		GFF923	0.26	-1.2
918,205	+		GFF923	0.26	-0.5
918,205	+		GFF923	0.26	+1.5
918,205	+		GFF923	0.26	+0.4
918,205	+		GFF923	0.26	-0.7
918,205	+		GFF923	0.26	-0.3
918,208	-		GFF923	0.27	-1.6
918,208	-		GFF923	0.27	-1.0
918,208	-		GFF923	0.27	-0.8
918,208	-		GFF923	0.27	-0.1
918,213	-		GFF923	0.27	-2.1
918,213	-		GFF923	0.27	-2.4
918,213	-		GFF923	0.27	+0.9
918,213	-		GFF923	0.27	-0.4
918,213	-		GFF923	0.27	-0.1
918,213	-		GFF923	0.27	-0.6
918,213	-		GFF923	0.27	-1.4
918,223	-		GFF923	0.28	-1.9
918,224	+		GFF923	0.28	-0.1
918,224	+		GFF923	0.28	-0.7
918,224	+		GFF923	0.28	-2.2
918,224	+		GFF923	0.28	+0.6
918,230	+		GFF923	0.28	+0.0
918,230	+		GFF923	0.28	-0.7
918,232	-		GFF923	0.28	-2.7
918,232	-		GFF923	0.28	-0.7
918,243	+		GFF923	0.29	+1.4
918,243	+		GFF923	0.29	+0.3
918,251	-		GFF923	0.30	+0.2
918,251	-		GFF923	0.30	-0.9
918,265	-		GFF923	0.31	-0.6
918,270	+		GFF923	0.31	+1.1
918,270	+		GFF923	0.31	+0.2
918,278	-		GFF923	0.32	-0.1
918,284	+		GFF923	0.33	-0.7
918,298	-		GFF923	0.34	-0.4
918,300	-		GFF923	0.34	-1.3
918,335	-		GFF923	0.37	-0.3
918,335	-		GFF923	0.37	-1.1
918,335	-		GFF923	0.37	+1.1
918,339	+		GFF923	0.37	+0.0
918,347	-		GFF923	0.38	-1.1
918,347	-		GFF923	0.38	-0.1
918,350	+		GFF923	0.38	-1.9
918,355	+		GFF923	0.38	-1.1
918,363	-		GFF923	0.39	+0.6
918,406	+		GFF923	0.42	-0.4
918,414	-		GFF923	0.43	-0.4
918,419	-		GFF923	0.43	-0.5
918,426	-		GFF923	0.44	-1.8
918,471	+		GFF923	0.48	-1.6
918,471	+		GFF923	0.48	-0.6
918,471	+		GFF923	0.48	-0.8
918,472	+		GFF923	0.48	+0.2
918,474	-		GFF923	0.48	-1.1
918,479	-		GFF923	0.48	-0.1
918,484	-		GFF923	0.49	-0.9
918,527	+		GFF923	0.52	+0.4
918,532	+		GFF923	0.52	-1.2
918,535	-		GFF923	0.53	+0.1
918,560	+		GFF923	0.55	-1.0
918,562	-		GFF923	0.55	-0.5
918,565	+		GFF923	0.55	-1.8
918,595	+		GFF923	0.58	+1.6
918,648	-		GFF923	0.62	-0.8
918,690	+		GFF923	0.65	-1.1
918,690	+		GFF923	0.65	-1.1
918,690	+		GFF923	0.65	+0.3
918,690	+		GFF923	0.65	-0.5
918,698	-		GFF923	0.66	-0.4
918,698	-		GFF923	0.66	+1.6
918,698	-		GFF923	0.66	-0.9
918,700	+		GFF923	0.66	+0.5
918,707	+		GFF923	0.67	-1.9
918,708	-		GFF923	0.67	-1.2
918,708	-		GFF923	0.67	+0.4
918,708	-		GFF923	0.67	-1.3
918,708	-		GFF923	0.67	-0.7
918,708	-		GFF923	0.67	-0.4
918,727	+		GFF923	0.68	-0.8
918,732	+		GFF923	0.69	+0.8
918,732	+		GFF923	0.69	-1.5
918,732	+		GFF923	0.69	-1.0
918,732	+		GFF923	0.69	-2.0
918,732	+		GFF923	0.69	-0.4
918,740	-		GFF923	0.69	-0.7
918,740	-		GFF923	0.69	+0.8
918,740	-		GFF923	0.69	-0.5
918,740	-		GFF923	0.69	+0.1
918,757	-		GFF923	0.71	-0.6
918,764	+		GFF923	0.71	-2.2
918,771	+		GFF923	0.72	+0.6
918,771	+		GFF923	0.72	+1.0
918,791	+		GFF923	0.73	-1.0
918,801	+		GFF923	0.74	-0.3
918,804	-		GFF923	0.74	-0.4
918,804	-		GFF923	0.74	-1.8
918,809	-		GFF923	0.75	+0.4
918,809	-		GFF923	0.75	-0.6
918,826	-		GFF923	0.76	-0.8
918,826	-		GFF923	0.76	-1.0
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920,012	+				+0.0
920,021	+				+1.2
920,040	-				+0.3
920,062	+				-1.1
920,067	+				-1.9
920,067	+				+0.4
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920,077	+				-0.8
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920,077	+				-1.0
920,077	+				+0.5
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920,085	-				+0.0
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920,085	-				-0.7
920,085	-				-0.8
920,085	-				+0.2
920,085	-				-2.0
920,085	-				+0.0
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920,090	-				-0.4
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920,110	+				+0.8
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