Strain Fitness in Sphingobium sp. HT1-2 around GFF905

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
895,520	-				-0.9
895,522	+				-0.2
895,542	+				-0.9
895,599	+				+1.0
895,599	+				-0.4
895,599	+				-0.6
895,599	+				-1.1
895,603	-				-0.4
895,637	-				+1.0
895,668	+		GFF904	0.13	-0.0
895,680	+		GFF904	0.14	+1.0
895,680	+		GFF904	0.14	-1.7
895,709	+		GFF904	0.18	-1.9
895,719	-		GFF904	0.19	-0.6
895,720	-		GFF904	0.19	+0.0
895,735	+		GFF904	0.20	-1.6
895,735	+		GFF904	0.20	+0.2
895,743	-		GFF904	0.21	-0.6
895,748	+		GFF904	0.22	+0.5
895,749	+		GFF904	0.22	+0.1
895,756	+		GFF904	0.23	+0.9
895,756	+		GFF904	0.23	-0.1
895,756	+		GFF904	0.23	-0.1
895,756	+		GFF904	0.23	-0.7
895,756	-		GFF904	0.23	-1.7
895,756	-		GFF904	0.23	+1.0
895,761	-		GFF904	0.23	-0.2
895,764	-		GFF904	0.23	-1.0
895,764	-		GFF904	0.23	-1.0
895,764	-		GFF904	0.23	-0.5
895,787	+		GFF904	0.26	+0.3
895,805	+		GFF904	0.28	-0.5
895,808	-		GFF904	0.28	-0.8
895,813	-		GFF904	0.29	-1.5
895,838	-		GFF904	0.31	+0.8
895,838	-		GFF904	0.31	-1.8
895,840	+		GFF904	0.32	-0.4
895,845	-		GFF904	0.32	+1.6
895,861	-		GFF904	0.34	+0.5
895,881	+		GFF904	0.36	-1.4
895,893	+		GFF904	0.37	+0.2
895,893	+		GFF904	0.37	-1.6
895,893	+		GFF904	0.37	+1.3
895,894	+		GFF904	0.37	+1.1
895,903	+		GFF904	0.38	-0.1
895,908	+		GFF904	0.39	-1.2
895,911	-		GFF904	0.39	+0.2
895,913	+		GFF904	0.39	+0.7
895,916	-		GFF904	0.40	-0.2
895,929	+		GFF904	0.41	+0.2
895,942	+		GFF904	0.42	-1.8
895,945	-		GFF904	0.43	+0.5
895,953	-		GFF904	0.44	-0.4
895,957	-		GFF904	0.44	-1.6
895,963	+		GFF904	0.45	+0.5
895,968	+		GFF904	0.45	+0.8
895,968	+		GFF904	0.45	-0.7
895,971	-		GFF904	0.46	-1.3
895,992	+		GFF904	0.48	-1.5
896,000	-		GFF904	0.49	+0.5
896,000	-		GFF904	0.49	-2.1
896,000	-		GFF904	0.49	-1.2
896,000	-		GFF904	0.49	+1.0
896,000	-		GFF904	0.49	-0.2
896,005	-		GFF904	0.49	-0.4
896,028	+		GFF904	0.52	-0.5
896,028	+		GFF904	0.52	-0.6
896,028	+		GFF904	0.52	-0.6
896,028	+		GFF904	0.52	+0.2
896,028	+		GFF904	0.52	-1.4
896,028	+		GFF904	0.52	+0.8
896,036	-		GFF904	0.52	-0.9
896,036	-		GFF904	0.52	+1.5
896,041	-		GFF904	0.53	-0.6
896,062	-		GFF904	0.55	-0.6
896,064	-		GFF904	0.55	-1.2
896,086	+		GFF904	0.58	-2.3
896,086	+		GFF904	0.58	+0.3
896,086	+		GFF904	0.58	-1.7
896,088	+		GFF904	0.58	-0.4
896,088	+		GFF904	0.58	-1.7
896,105	+		GFF904	0.60	-1.5
896,105	+		GFF904	0.60	+1.0
896,113	-		GFF904	0.61	-0.2
896,115	+		GFF904	0.61	+1.4
896,118	-		GFF904	0.61	-0.9
896,118	-		GFF904	0.61	+0.5
896,154	-		GFF904	0.65	+0.3
896,181	+		GFF904	0.68	-1.2
896,189	-		GFF904	0.69	-0.3
896,227	+		GFF904	0.73	-0.8
896,227	+		GFF904	0.73	-0.3
896,235	-		GFF904	0.74	-0.2
896,242	-		GFF904	0.74	-1.8
896,242	-		GFF904	0.74	-1.1
896,250	-		GFF904	0.75	-0.2
896,256	-		GFF904	0.76	+0.6
896,256	-		GFF904	0.76	-0.4
896,258	+		GFF904	0.76	+1.1
896,289	-		GFF904	0.79	-1.0
896,314	+		GFF904	0.82	-0.8
896,322	-		GFF904	0.83	-1.7
896,338	+		GFF904	0.85	+0.5
896,346	-		GFF904	0.86	+0.5
896,358	+		GFF904	0.87	-0.3
896,366	-		GFF904	0.88	-0.2
896,380	+		GFF904	0.89	-0.6
896,385	+		GFF904	0.90	-1.2
896,388	-				-0.8
896,388	-				+0.5
896,388	-				-0.9
896,408	+				-0.7
896,418	+				-1.5
896,418	+				-0.2
896,418	+				-1.1
896,418	+				-1.2
896,418	+				+0.4
896,418	+				-0.3
896,418	+				+0.0
896,418	+				-0.4
896,418	+				-1.1
896,418	+				+1.7
896,418	+				-1.2
896,418	+				-0.8
896,418	+				-0.2
896,418	+				-0.4
896,418	+				-1.6
896,418	+				-0.2
896,418	+				-0.3
896,418	+				+0.7
896,418	+				-0.8
896,418	+				+0.6
896,418	+				-1.8
896,418	+				-1.2
896,418	+				+1.3
896,418	+				-1.0
896,426	-				-0.5
896,426	-				+0.3
896,426	-				-0.9
896,426	-				-0.9
896,426	-				-1.5
896,426	-				+0.5
896,426	-				-0.2
896,426	-				+0.7
896,426	-				+0.5
896,426	-				-0.3
896,426	-				-0.5
896,426	-				-1.8
896,426	-				-0.4
896,426	-				-1.9
896,426	-				+0.9
896,426	-				-1.4
896,426	-				-0.9
896,426	-				+0.3
896,426	-				-2.2
896,426	-				+0.2
896,426	-				+0.2
896,426	-				+0.5
896,426	-				-0.4
896,426	-				-0.7
896,426	-				-1.1
896,426	-				+0.1
896,426	-				-1.0
896,432	-				+1.6
896,442	+				+1.7
896,450	-				-1.1
896,455	-				-1.3
896,459	+				+0.2
896,465	+				-0.9
896,465	+				-0.2
896,465	+				-0.8
896,475	+				+0.4
896,478	-				+0.5
896,479	+				-0.4
896,482	-				+1.2
896,482	-				+0.6
896,483	-				-1.3
896,484	+				-0.7
896,486	+				-0.7
896,492	-				+0.1
896,492	-				-1.8
896,492	-				-0.2
896,492	-				-1.4
896,492	-				+0.8
896,492	-				-0.4
896,492	-				+0.2
896,492	-				-2.1
896,492	-				-0.6
896,512	+				-1.0
896,520	-				-1.1
896,547	-				+0.3
896,561	+				-0.8
896,561	+				-0.4
896,569	-				+0.3
896,569	-				-0.6
896,583	+				+0.8
896,587	+		GFF905	0.10	-0.7
896,587	+		GFF905	0.10	-0.6
896,595	-		GFF905	0.11	-0.0
896,601	-		GFF905	0.11	-1.8
896,633	+		GFF905	0.14	+0.4
896,641	-		GFF905	0.15	-1.2
896,657	+		GFF905	0.17	-1.4
896,662	+		GFF905	0.17	+0.0
896,665	-		GFF905	0.18	-1.0
896,668	+		GFF905	0.18	-1.7
896,673	-		GFF905	0.18	-1.2
896,676	-		GFF905	0.19	+0.5
896,676	-		GFF905	0.19	-0.5
896,676	-		GFF905	0.19	-0.0
896,685	-		GFF905	0.19	-0.8
896,687	+		GFF905	0.20	-1.0
896,700	-		GFF905	0.21	-1.3
896,724	+		GFF905	0.23	-0.7
896,729	-		GFF905	0.24	+0.4
896,744	+		GFF905	0.25	-0.4
896,752	-		GFF905	0.26	-0.1
896,762	-		GFF905	0.27	-1.0
896,781	+		GFF905	0.29	+0.6
896,804	+		GFF905	0.31	+1.9
896,836	+		GFF905	0.34	-1.1
896,868	+		GFF905	0.37	-0.5
896,869	+		GFF905	0.37	+0.2
896,869	+		GFF905	0.37	-0.5
896,869	+		GFF905	0.37	+0.7
896,877	-		GFF905	0.38	+1.6
896,877	-		GFF905	0.38	-0.5
896,877	-		GFF905	0.38	-0.6
896,877	-		GFF905	0.38	+0.1
896,898	+		GFF905	0.40	+0.8
896,949	+		GFF905	0.45	+1.0
896,949	+		GFF905	0.45	-0.2
896,949	+		GFF905	0.45	-1.6
896,957	-		GFF905	0.46	+0.7
896,957	-		GFF905	0.46	+0.5
896,957	-		GFF905	0.46	-0.1
896,957	-		GFF905	0.46	-0.5
896,957	-		GFF905	0.46	-1.1
896,957	-		GFF905	0.46	-0.7
896,957	-		GFF905	0.46	-0.2
896,957	-		GFF905	0.46	-0.9
896,959	+		GFF905	0.46	-1.2
896,959	+		GFF905	0.46	-1.3
896,959	+		GFF905	0.46	-0.4
896,959	+		GFF905	0.46	-1.0
896,959	+		GFF905	0.46	-1.7
896,959	+		GFF905	0.46	-2.2
896,959	+		GFF905	0.46	-1.3
896,960	+		GFF905	0.46	+0.5
896,967	-		GFF905	0.47	+0.4
896,967	-		GFF905	0.47	+1.2
896,967	-		GFF905	0.47	+0.1
896,982	+		GFF905	0.48	+1.4
896,988	+		GFF905	0.49	-1.4
896,994	+		GFF905	0.49	-1.8
896,994	+		GFF905	0.49	-0.0
896,994	+		GFF905	0.49	-1.7
896,994	+		GFF905	0.49	-0.6
896,994	+		GFF905	0.49	-1.2
896,995	-		GFF905	0.49	-1.1
897,002	-		GFF905	0.50	+0.4
897,002	-		GFF905	0.50	-0.7
897,024	-		GFF905	0.52	-1.2
897,041	+		GFF905	0.54	+0.4
897,093	-		GFF905	0.59	-0.5
897,100	-		GFF905	0.59	-1.6
897,117	+		GFF905	0.61	-0.9
897,118	+		GFF905	0.61	-0.1
897,119	+		GFF905	0.61	-1.1
897,124	+		GFF905	0.62	-1.6
897,132	-		GFF905	0.63	-1.3
897,137	-		GFF905	0.63	+1.1
897,139	-		GFF905	0.63	-0.9
897,139	-		GFF905	0.63	-0.5
897,154	-		GFF905	0.65	+1.7
897,192	-		GFF905	0.68	+0.5
897,202	-		GFF905	0.69	-0.8
897,212	-		GFF905	0.70	-1.1
897,217	-		GFF905	0.71	-0.3
897,255	+		GFF905	0.74	+0.0
897,286	+		GFF905	0.77	+0.4
897,294	-		GFF905	0.78	+0.6
897,298	-		GFF905	0.79	-0.7
897,315	+		GFF905	0.80	-1.5
897,315	+		GFF905	0.80	+0.8
897,315	+		GFF905	0.80	+0.5
897,315	+		GFF905	0.80	-1.1
897,315	+		GFF905	0.80	-0.4
897,321	-		GFF905	0.81	-1.3
897,323	-		GFF905	0.81	+0.4
897,341	+		GFF905	0.83	+1.0
897,348	+		GFF905	0.83	+0.1
897,348	+		GFF905	0.83	+0.6
897,348	+		GFF905	0.83	-1.2
897,354	+		GFF905	0.84	-1.0
897,361	-		GFF905	0.85	+0.5
897,361	-		GFF905	0.85	-1.0
897,361	-		GFF905	0.85	-2.3
897,361	-		GFF905	0.85	-1.7
897,366	+		GFF905	0.85	-1.3
897,366	+		GFF905	0.85	-0.6
897,366	+		GFF905	0.85	-0.3
897,374	-		GFF905	0.86	-0.9
897,374	-		GFF905	0.86	-0.1
897,374	-		GFF905	0.86	-1.1
897,389	-		GFF905	0.87	-0.0
897,391	+		GFF905	0.87	-0.2
897,396	+		GFF905	0.88	-2.2
897,396	+		GFF905	0.88	-0.8
897,396	+		GFF905	0.88	+0.4
897,396	+		GFF905	0.88	+0.1
897,396	+		GFF905	0.88	-0.0
897,396	+		GFF905	0.88	-1.8
897,399	-		GFF905	0.88	+0.6
897,403	+		GFF905	0.89	+0.6
897,404	-		GFF905	0.89	-0.6
897,404	-		GFF905	0.89	-1.0
897,404	-		GFF905	0.89	-0.4
897,408	+		GFF905	0.89	+0.4
897,413	+		GFF905	0.90	-0.1
897,416	-		GFF905	0.90	-0.7
897,421	-				-0.1
897,426	+				-1.4
897,431	+				-1.7
897,431	+				-0.6
897,431	+				+0.0
897,431	+				+0.3
897,439	-				-0.4
897,454	-				+1.4
897,454	-				-0.6
897,463	+				+1.4
897,463	+				-0.0
897,471	-				-0.2
897,484	+				-1.0
897,501	+				-1.4
897,501	+				-0.8
897,501	+				+0.1
897,501	+				+1.6
897,501	+				-0.6
897,501	+				-2.5
897,501	+				+1.2
897,501	+				+1.2
897,502	+				-0.2
897,504	+				+1.3
897,504	+				-1.7
897,509	-				-1.5
897,509	-				+0.3
897,509	-				-1.3
897,509	-				+0.4
897,509	-				-0.9
897,509	-				-0.3
897,509	-				+0.8
897,509	-				-1.0
897,509	-				+1.9
897,512	-				-1.9
897,512	-				+0.8
897,512	-				-0.5
897,512	-				-0.1
897,517	-				-1.0
897,520	+				+0.6
897,525	+				-0.4
897,530	+				-1.0
897,530	+				-1.0
897,532	+				+0.8
897,532	+				+1.5
897,532	+				-0.5
897,534	-				-1.7
897,540	-				-0.6
897,540	-				+0.0
897,562	+				-0.4
897,570	-				+0.7
897,572	+				+0.7
897,575	-				-0.3
897,575	-				-1.1
897,577	+				-1.4
897,580	-				-0.6
897,590	+				-0.8
897,590	+				-0.1
897,590	+				-1.2
897,590	+				-0.4
897,590	+				-1.0
897,590	+				-0.6
897,590	+				-0.7
897,590	+				+0.4
897,590	+				+1.1
897,597	+				-0.9
897,598	-				+0.3
897,598	-				-0.1
897,624	+				-0.3
897,624	+				+0.5
897,624	+				+1.3
897,624	+				-1.2
897,627	+				+0.8
897,632	-				-0.1
897,641	+				+1.1
897,643	+				+0.6
897,693	+				-1.9
897,697	+				-1.3
897,697	+				+0.4
897,697	+				-0.5
897,697	+				-2.0
897,701	-				-0.3
897,705	-				-1.1
897,705	-				+0.7
897,705	-				-0.3
897,705	-				+1.2
897,723	+				-2.5
897,723	+				-1.5
897,724	+				+1.1
897,731	-				-0.1
897,731	-				-1.2
897,731	-				-1.8
897,731	-				+1.0
897,731	-				+0.3
897,733	+				-1.0
897,733	-				-0.4
897,733	-				-0.9
897,779	+		GFF906	0.11	-1.0
897,779	+		GFF906	0.11	-0.1
897,779	+		GFF906	0.11	-1.8
897,779	+		GFF906	0.11	+0.1
897,779	+		GFF906	0.11	-1.9
897,787	-		GFF906	0.11	-2.3
897,787	-		GFF906	0.11	+0.5
897,789	-		GFF906	0.11	-0.7
897,789	-		GFF906	0.11	-0.4
897,791	+		GFF906	0.11	-0.9
897,801	+		GFF906	0.12	-0.4
897,809	-		GFF906	0.12	-0.7
897,827	+		GFF906	0.13	+0.5
897,830	+		GFF906	0.13	-1.1
897,846	-		GFF906	0.14	+1.8
897,858	+		GFF906	0.14	-0.4
897,866	-		GFF906	0.15	+0.0
897,866	-		GFF906	0.15	-1.2
897,871	-		GFF906	0.15	+1.6
897,881	-		GFF906	0.15	-1.3
897,884	+		GFF906	0.15	-0.1
897,884	+		GFF906	0.15	-0.8
897,884	+		GFF906	0.15	+0.4
897,884	+		GFF906	0.15	-1.0
897,884	+		GFF906	0.15	-0.2
897,884	+		GFF906	0.15	-1.3
897,884	+		GFF906	0.15	+0.2
897,892	-		GFF906	0.16	-1.3
897,892	-		GFF906	0.16	+0.5
897,892	-		GFF906	0.16	+0.5
897,892	-		GFF906	0.16	-0.4
897,892	-		GFF906	0.16	-0.4
897,892	-		GFF906	0.16	+0.3
897,894	+		GFF906	0.16	-0.7
897,927	-		GFF906	0.17	+0.3
897,934	+		GFF906	0.18	-1.7
897,940	-		GFF906	0.18	-2.4
897,949	-		GFF906	0.18	-1.0
897,949	-		GFF906	0.18	+1.1
897,958	+		GFF906	0.19	-0.6
897,994	+		GFF906	0.20	-0.7
897,994	+		GFF906	0.20	-1.5
897,994	+		GFF906	0.20	+0.7
897,994	+		GFF906	0.20	+1.5
897,994	+		GFF906	0.20	-1.7
897,994	+		GFF906	0.20	+0.1
897,994	+		GFF906	0.20	-1.7
897,994	+		GFF906	0.20	+0.5
898,001	-		GFF906	0.21	-0.5
898,001	-		GFF906	0.21	-0.4
898,002	-		GFF906	0.21	-0.7
898,002	-		GFF906	0.21	-0.8
898,002	-		GFF906	0.21	+0.2
898,002	-		GFF906	0.21	+0.5
898,002	-		GFF906	0.21	-0.8
898,002	-		GFF906	0.21	+0.5
898,002	-		GFF906	0.21	-1.1
898,002	-		GFF906	0.21	-0.5
898,010	+		GFF906	0.21	-0.4
898,010	+		GFF906	0.21	-1.3
898,018	-		GFF906	0.22	-0.1
898,037	+		GFF906	0.22	-0.1
898,042	+		GFF906	0.23	+0.9
898,043	-		GFF906	0.23	+0.2
898,069	-		GFF906	0.24	-0.5
898,090	+		GFF906	0.25	+0.7
898,093	-		GFF906	0.25	-0.8
898,098	-		GFF906	0.25	+0.7
898,098	-		GFF906	0.25	-0.2
898,098	-		GFF906	0.25	-0.8
898,098	-		GFF906	0.25	+0.4
898,129	-		GFF906	0.27	-1.0
898,129	-		GFF906	0.27	-1.2
898,177	-		GFF906	0.29	-1.7
898,177	-		GFF906	0.29	+1.2
898,177	-		GFF906	0.29	-1.2
898,257	+		GFF906	0.32	-2.5
898,258	+		GFF906	0.32	+0.1
898,273	+		GFF906	0.33	-0.7
898,281	-		GFF906	0.34	-2.8
898,292	-		GFF906	0.34	+0.9
898,294	+		GFF906	0.34	-0.6
898,295	+		GFF906	0.34	-0.5
898,301	-		GFF906	0.34	-0.9
898,302	-		GFF906	0.34	-0.8
898,302	-		GFF906	0.34	+0.2
898,319	+		GFF906	0.35	-2.0
898,327	+		GFF906	0.36	-1.2
898,327	+		GFF906	0.36	-1.0
898,327	+		GFF906	0.36	-1.2
898,327	+		GFF906	0.36	+1.5
898,327	+		GFF906	0.36	-1.1
898,327	+		GFF906	0.36	-0.8
898,327	+		GFF906	0.36	-1.6
898,327	+		GFF906	0.36	-1.7
898,335	-		GFF906	0.36	-0.4
898,335	-		GFF906	0.36	+0.7
898,335	-		GFF906	0.36	+1.0
898,335	-		GFF906	0.36	+0.9
898,335	-		GFF906	0.36	-0.9
898,335	-		GFF906	0.36	-0.7
898,335	-		GFF906	0.36	-1.4
898,335	-		GFF906	0.36	-1.0
898,335	-		GFF906	0.36	-1.6
898,335	-		GFF906	0.36	-0.6
898,335	-		GFF906	0.36	+0.8
898,335	-		GFF906	0.36	+1.6
898,351	+		GFF906	0.37	-0.5
898,352	-		GFF906	0.37	+0.8
898,359	+		GFF906	0.37	+0.3
898,366	-		GFF906	0.37	+1.2
898,366	-		GFF906	0.37	+0.6
898,366	-		GFF906	0.37	+0.8
898,379	-		GFF906	0.38	-0.4
898,386	-		GFF906	0.38	-1.2
898,426	+		GFF906	0.40	-1.1
898,433	-		GFF906	0.40	-0.2
898,433	-		GFF906	0.40	-0.9
898,451	+		GFF906	0.41	+0.5
898,451	+		GFF906	0.41	-0.0
898,451	+		GFF906	0.41	+1.4
898,455	+		GFF906	0.41	+1.0
898,459	-		GFF906	0.42	-0.2
898,459	-		GFF906	0.42	-1.3
898,459	-		GFF906	0.42	-0.7
898,459	-		GFF906	0.42	+0.0
898,459	-		GFF906	0.42	-1.4
898,459	-		GFF906	0.42	-0.3
898,461	+		GFF906	0.42	-1.3
898,461	+		GFF906	0.42	-0.3
898,461	+		GFF906	0.42	+0.3
898,461	+		GFF906	0.42	+0.2
898,469	-		GFF906	0.42	-0.9
898,474	+		GFF906	0.42	+0.0
898,475	+		GFF906	0.42	-0.8
898,481	-		GFF906	0.43	+0.1
898,482	-		GFF906	0.43	+1.3
898,483	-		GFF906	0.43	-0.8
898,488	-		GFF906	0.43	+0.6
898,499	+		GFF906	0.43	-0.4