Strain Fitness in Sphingobium sp. HT1-2 around GFF877

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
865,051	+		GFF875	0.81	-0.6
865,051	-		GFF875	0.81	-0.8
865,051	-		GFF875	0.81	-1.0
865,059	-		GFF875	0.81	-0.2
865,059	-		GFF875	0.81	-1.5
865,085	+		GFF875	0.83	-0.5
865,093	-		GFF875	0.83	+0.6
865,093	-		GFF875	0.83	-1.5
865,094	-		GFF875	0.83	-0.5
865,107	+		GFF875	0.84	+0.6
865,114	-		GFF875	0.84	-0.4
865,139	-		GFF875	0.85	-2.1
865,139	-		GFF875	0.85	-0.4
865,146	-		GFF875	0.86	-0.5
865,187	+		GFF875	0.88	+0.4
865,203	-		GFF875	0.89	-1.1
865,207	-		GFF875	0.89	-0.9
865,214	+		GFF875	0.90	-0.9
865,239	-				-0.4
865,290	+				-0.9
865,290	+				+0.2
865,295	+				-1.1
865,298	-				+1.0
865,303	-				+0.6
865,303	-				+0.6
865,313	+				+1.1
865,323	-				+1.5
865,342	-				-1.1
865,349	+				-1.1
865,365	+				+0.8
865,379	+				-0.7
865,379	-				-0.2
865,387	-				-0.7
865,387	-				-1.3
865,387	-				+0.2
865,431	-				+0.4
865,450	-				-0.3
865,460	+				-0.5
865,468	-				-0.4
865,470	+				-0.6
865,470	+				-0.7
865,470	+				+0.3
865,470	+				+0.8
865,470	+				-0.1
865,478	-		GFF876	0.11	+0.5
865,478	-		GFF876	0.11	-0.2
865,478	-		GFF876	0.11	+0.4
865,478	-		GFF876	0.11	-1.4
865,480	+		GFF876	0.11	+0.5
865,491	+		GFF876	0.13	+0.6
865,499	-		GFF876	0.14	-1.0
865,504	-		GFF876	0.15	-0.4
865,508	-		GFF876	0.15	-0.1
865,508	-		GFF876	0.15	+0.1
865,510	+		GFF876	0.16	+0.5
865,513	-		GFF876	0.16	-2.1
865,513	-		GFF876	0.16	+0.1
865,518	-		GFF876	0.17	-0.8
865,518	-		GFF876	0.17	-0.6
865,518	-		GFF876	0.17	-1.1
865,525	+		GFF876	0.18	-0.5
865,559	+		GFF876	0.23	-1.9
865,564	+		GFF876	0.24	-0.5
865,576	+		GFF876	0.26	-1.5
865,577	-		GFF876	0.26	+0.5
865,584	-		GFF876	0.27	-0.4
865,589	-		GFF876	0.28	+1.4
865,616	+		GFF876	0.32	-0.7
865,622	-		GFF876	0.33	-0.5
865,625	+		GFF876	0.34	-0.8
865,644	+		GFF876	0.37	+2.0
865,644	+		GFF876	0.37	-1.0
865,668	-		GFF876	0.40	-0.5
865,681	+		GFF876	0.42	+0.0
865,686	+		GFF876	0.43	+0.3
865,686	+		GFF876	0.43	-1.5
865,689	-		GFF876	0.44	-1.8
865,689	-		GFF876	0.44	+0.7
865,691	+		GFF876	0.44	-1.5
865,720	-		GFF876	0.49	-0.9
865,722	-		GFF876	0.49	+0.4
865,739	+		GFF876	0.52	+1.3
865,740	-		GFF876	0.52	-0.5
865,744	+		GFF876	0.52	-0.1
865,766	-		GFF876	0.56	+0.9
865,783	-		GFF876	0.58	-0.8
865,806	-		GFF876	0.62	+0.5
865,834	-		GFF876	0.67	-0.8
865,840	+		GFF876	0.67	+0.1
865,840	+		GFF876	0.67	+0.2
865,848	-		GFF876	0.69	+0.9
865,852	+		GFF876	0.69	-0.2
865,857	+		GFF876	0.70	+0.2
865,857	+		GFF876	0.70	-0.4
865,857	+		GFF876	0.70	-0.3
865,865	-		GFF876	0.71	-0.6
865,865	-		GFF876	0.71	-0.7
865,865	-		GFF876	0.71	-1.0
865,865	-		GFF876	0.71	+0.8
865,865	-		GFF876	0.71	-0.5
865,865	-		GFF876	0.71	-0.4
865,865	-		GFF876	0.71	-1.0
865,865	-		GFF876	0.71	+0.3
865,891	-		GFF876	0.75	+0.9
865,905	-		GFF876	0.78	-0.5
865,907	+		GFF876	0.78	-0.5
865,916	+		GFF876	0.79	-0.7
865,925	+		GFF876	0.81	+0.5
865,934	-		GFF876	0.82	-0.9
865,949	+		GFF876	0.85	-1.2
865,952	-		GFF876	0.85	-1.1
866,007	-				+0.6
866,174	+		GFF877	0.21	-0.9
866,193	+		GFF877	0.24	-0.7
866,202	+		GFF877	0.26	-0.4
866,240	+		GFF877	0.32	-1.2
866,245	+		GFF877	0.33	-1.5
866,295	+		GFF877	0.41	-0.8
866,345	+		GFF877	0.49	-1.5
866,362	+		GFF877	0.52	-0.7
866,369	-		GFF877	0.53	-1.2
866,386	+		GFF877	0.56	-2.2
866,386	+		GFF877	0.56	-0.3
866,386	+		GFF877	0.56	-0.6
866,386	+		GFF877	0.56	-1.4
866,404	-		GFF877	0.59	-0.5
866,477	-		GFF877	0.71	-0.4
866,497	+		GFF877	0.74	-0.4
866,497	+		GFF877	0.74	-0.4
866,497	+		GFF877	0.74	-0.4
866,497	+		GFF877	0.74	-0.7
866,505	-		GFF877	0.76	-1.1
866,512	+		GFF877	0.77	-1.6
866,520	-		GFF877	0.78	-1.6
866,523	+		GFF877	0.79	-0.7
866,524	+		GFF877	0.79	-1.1
866,524	+		GFF877	0.79	-0.6
866,524	+		GFF877	0.79	-0.9
866,524	+		GFF877	0.79	-1.1
866,524	+		GFF877	0.79	-1.0
866,524	+		GFF877	0.79	-0.5
866,524	+		GFF877	0.79	-1.4
866,525	-		GFF877	0.79	-1.0
866,526	-		GFF877	0.79	-1.5
866,532	-		GFF877	0.80	+0.3
866,532	-		GFF877	0.80	-1.1
866,532	-		GFF877	0.80	-0.4
866,532	-		GFF877	0.80	-0.5
866,577	-		GFF877	0.88	-1.1
866,651	+				-0.9
866,659	-				+1.2
866,661	+				-1.0
866,661	+				+0.9
866,683	+				-0.3
866,684	+				+1.2
866,726	-				-1.6
866,727	+				-1.2
866,756	-				-0.6
866,758	+				-1.0
866,815	-				-1.4
866,825	-				-0.5
866,825	-				-0.9
866,840	+				+0.4
866,910	+				-1.0
866,910	+				-0.4
866,918	-				-0.4
866,949	+				-0.7
867,023	+				-0.5
867,023	+				-1.4
867,031	-		GFF878	0.10	-1.1
867,031	-		GFF878	0.10	-0.7
867,049	+		GFF878	0.11	-0.7
867,057	+		GFF878	0.11	-1.1
867,057	-		GFF878	0.11	-0.9
867,059	+		GFF878	0.11	-0.9
867,059	+		GFF878	0.11	-0.8
867,067	+		GFF878	0.11	-0.4
867,067	-		GFF878	0.11	-2.2
867,067	-		GFF878	0.11	-1.4
867,124	+		GFF878	0.13	-1.1
867,124	+		GFF878	0.13	-1.0
867,124	+		GFF878	0.13	-1.1
867,132	-		GFF878	0.13	-1.6
867,145	+		GFF878	0.13	-1.1
867,164	+		GFF878	0.14	-1.6
867,172	-		GFF878	0.14	-1.8
867,177	-		GFF878	0.14	-1.2
867,182	+		GFF878	0.14	-1.4
867,201	+		GFF878	0.15	-0.7
867,215	-		GFF878	0.15	-0.9
867,215	-		GFF878	0.15	-0.6
867,215	-		GFF878	0.15	+0.0
867,215	-		GFF878	0.15	-0.7
867,215	-		GFF878	0.15	-1.9
867,215	-		GFF878	0.15	-1.1
867,234	-		GFF878	0.16	-1.1
867,234	-		GFF878	0.16	-2.0
867,237	+		GFF878	0.16	-1.1
867,246	+		GFF878	0.16	-0.5
867,249	-		GFF878	0.16	-0.7
867,307	+		GFF878	0.18	-1.1
867,321	-		GFF878	0.18	-0.6
867,336	-		GFF878	0.18	-1.1
867,378	-		GFF878	0.19	-1.1
867,433	+		GFF878	0.21	-0.5
867,445	-		GFF878	0.21	-0.9
867,546	-		GFF878	0.24	-1.6
867,591	-		GFF878	0.25	-2.2
867,601	+		GFF878	0.25	-0.3
867,630	+		GFF878	0.26	-1.6
867,638	-		GFF878	0.26	-0.6