Strain Fitness in Sphingobium sp. HT1-2 around GFF814

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
801,169	-		GFF812	0.20	-0.3
801,169	-		GFF812	0.20	-1.4
801,169	-		GFF812	0.20	+0.6
801,169	-		GFF812	0.20	+0.8
801,169	-		GFF812	0.20	+0.6
801,169	-		GFF812	0.20	-0.8
801,169	-		GFF812	0.20	-0.4
801,175	-		GFF812	0.20	-0.0
801,185	-		GFF812	0.21	-0.6
801,200	-		GFF812	0.23	-0.5
801,215	-		GFF812	0.25	-0.2
801,229	-		GFF812	0.26	-0.9
801,237	-		GFF812	0.27	-1.8
801,239	+		GFF812	0.27	-1.0
801,254	-		GFF812	0.29	+0.2
801,254	-		GFF812	0.29	-0.2
801,259	+		GFF812	0.29	+0.5
801,264	+		GFF812	0.30	-1.6
801,264	+		GFF812	0.30	-1.7
801,272	-		GFF812	0.31	+0.3
801,272	-		GFF812	0.31	-1.4
801,323	+		GFF812	0.36	+0.5
801,326	-		GFF812	0.37	-1.2
801,326	-		GFF812	0.37	-1.5
801,346	-		GFF812	0.39	-1.4
801,396	+		GFF812	0.44	+0.3
801,420	+		GFF812	0.47	-0.7
801,425	+		GFF812	0.47	-1.2
801,425	+		GFF812	0.47	-0.7
801,425	+		GFF812	0.47	-0.8
801,433	-		GFF812	0.48	-1.2
801,471	+		GFF812	0.52	+0.4
801,479	-		GFF812	0.53	-0.4
801,497	+		GFF812	0.55	+0.2
801,501	-		GFF812	0.55	+1.1
801,506	-		GFF812	0.56	+1.2
801,507	+		GFF812	0.56	-0.2
801,513	+		GFF812	0.57	+0.2
801,521	-		GFF812	0.58	+0.2
801,521	-		GFF812	0.58	-1.4
801,521	-		GFF812	0.58	-0.4
801,573	+		GFF812	0.63	-1.7
801,610	+		GFF812	0.67	-0.5
801,616	+		GFF812	0.68	-0.1
801,618	-		GFF812	0.68	-1.7
801,618	-		GFF812	0.68	-0.7
801,618	-		GFF812	0.68	-2.6
801,633	-		GFF812	0.70	-0.1
801,699	+		GFF812	0.77	+1.6
801,722	+		GFF812	0.79	-2.0
801,727	+		GFF812	0.80	-1.2
801,739	+		GFF812	0.81	+0.4
801,755	+		GFF812	0.83	-0.4
801,768	+		GFF812	0.84	-0.3
801,794	-		GFF812	0.87	-0.2
801,848	+				-0.9
801,848	-				+0.2
801,856	+				-1.9
801,856	+				+1.0
801,856	+				+0.2
801,856	+				-0.5
801,861	+				-1.0
801,864	-				-0.4
801,864	-				-0.8
801,864	-				-1.4
801,869	-				-0.9
801,869	-				-0.8
801,869	-				-1.4
801,869	-				-0.7
801,873	+				-0.0
801,874	-				-1.4
801,881	-				-0.4
801,881	-				-0.6
801,881	-				-0.4
801,881	-				+1.2
801,940	+				-0.1
801,942	+				+0.3
801,961	+				-0.0
801,962	-				-0.8
801,980	+		GFF813	0.15	+0.7
801,980	+		GFF813	0.15	-0.0
801,985	+		GFF813	0.17	-0.1
801,988	-		GFF813	0.19	-0.0
801,990	+		GFF813	0.20	+1.0
801,998	-		GFF813	0.25	-0.4
802,019	+		GFF813	0.36	-0.5
802,027	-		GFF813	0.40	+0.0
802,027	-		GFF813	0.40	-0.1
802,027	-		GFF813	0.40	+1.0
802,045	+		GFF813	0.50	+1.0
802,045	+		GFF813	0.50	-0.6
802,046	+		GFF813	0.51	-0.5
802,047	+		GFF813	0.51	-0.5
802,047	+		GFF813	0.51	-0.3
802,047	+		GFF813	0.51	-0.6
802,047	+		GFF813	0.51	-0.0
802,050	+		GFF813	0.53	-1.3
802,055	-		GFF813	0.56	-1.0
802,091	-		GFF813	0.75	-0.0
802,095	+		GFF813	0.78	-0.8
802,095	+		GFF813	0.78	+0.1
802,095	+		GFF813	0.78	-0.1
802,095	+		GFF813	0.78	-0.8
802,095	+		GFF813	0.78	-1.1
802,095	+		GFF813	0.78	-2.0
802,095	+		GFF813	0.78	-1.2
802,095	+		GFF813	0.78	+0.3
802,095	+		GFF813	0.78	-0.9
802,095	+		GFF813	0.78	-1.5
802,103	-		GFF813	0.82	-2.1
802,103	-		GFF813	0.82	+0.1
802,103	-		GFF813	0.82	-0.0
802,103	-		GFF813	0.82	-1.1
802,103	-		GFF813	0.82	+0.1
802,103	-		GFF813	0.82	-1.6
802,103	-		GFF813	0.82	+0.3
802,103	-		GFF813	0.82	+0.4
802,103	-		GFF813	0.82	+0.2
802,103	-		GFF813	0.82	+0.4
802,112	-		GFF813	0.87	-1.0
802,122	-				-1.4
802,126	+				-0.9
802,129	+				-1.1
802,137	-				+0.5
802,138	+				-1.0
802,138	+				-0.6
802,138	+				-1.5
802,139	-				-1.0
802,146	-				+0.2
802,146	-				-0.4
802,146	-				-0.8
802,146	-				-1.5
802,167	+				-0.7
802,182	+				-0.9
802,182	+				-0.7
802,192	+				-1.7
802,192	+				-1.6
802,201	-				-0.6
802,201	-				-0.9
802,205	-				-1.7
802,209	-				-1.0
802,217	+				-1.8
802,232	-				-0.9
802,259	+				-0.9
802,265	-				-2.0
802,277	-		GFF814	0.11	-0.7
802,302	-		GFF814	0.12	-2.2
802,313	-		GFF814	0.13	-1.7
802,313	-		GFF814	0.13	-1.4
802,316	+		GFF814	0.14	-0.7
802,334	+		GFF814	0.15	-2.5
802,334	+		GFF814	0.15	-0.9
802,334	+		GFF814	0.15	-0.9
802,334	+		GFF814	0.15	-0.4
802,334	+		GFF814	0.15	-0.2
802,334	+		GFF814	0.15	-1.8
802,334	+		GFF814	0.15	-2.1
802,337	-		GFF814	0.15	-1.6
802,340	+		GFF814	0.15	-0.7
802,340	+		GFF814	0.15	-0.9
802,340	+		GFF814	0.15	-0.7
802,342	-		GFF814	0.16	-1.7
802,342	-		GFF814	0.16	-1.9
802,342	-		GFF814	0.16	-0.1
802,342	-		GFF814	0.16	-1.3
802,342	-		GFF814	0.16	-1.2
802,342	-		GFF814	0.16	-1.5
802,342	-		GFF814	0.16	-1.1
802,342	-		GFF814	0.16	-1.9
802,342	-		GFF814	0.16	-0.6
802,342	-		GFF814	0.16	-1.1
802,342	-		GFF814	0.16	-1.2
802,342	-		GFF814	0.16	-0.4
802,344	+		GFF814	0.16	-0.8
802,348	-		GFF814	0.16	-1.6
802,348	-		GFF814	0.16	-3.6
802,358	-		GFF814	0.17	-1.1
802,375	+		GFF814	0.18	-1.8
802,416	+		GFF814	0.21	-1.3
802,416	+		GFF814	0.21	-1.3
802,430	+		GFF814	0.22	-2.3
802,442	-		GFF814	0.23	-2.3
802,442	-		GFF814	0.23	-1.4
802,442	-		GFF814	0.23	-1.0
802,449	+		GFF814	0.24	-1.1
802,452	-		GFF814	0.24	-1.7
802,457	-		GFF814	0.24	-2.0
802,462	-		GFF814	0.25	-1.2
802,489	+		GFF814	0.27	-2.4
802,497	-		GFF814	0.28	-0.5
802,497	-		GFF814	0.28	-1.4
802,497	-		GFF814	0.28	-2.2
802,497	-		GFF814	0.28	-1.2
802,508	-		GFF814	0.28	-1.7
802,562	+		GFF814	0.33	-0.5
802,570	-		GFF814	0.33	-1.6
802,603	-		GFF814	0.36	-0.4
802,618	-		GFF814	0.37	-1.2
802,624	+		GFF814	0.37	-1.7
802,625	+		GFF814	0.38	-2.6
802,625	+		GFF814	0.38	-1.3
802,625	+		GFF814	0.38	-1.3
802,625	+		GFF814	0.38	-0.7
802,625	+		GFF814	0.38	-1.2
802,625	+		GFF814	0.38	-1.9
802,625	+		GFF814	0.38	-0.4
802,625	+		GFF814	0.38	-1.6
802,625	+		GFF814	0.38	-2.6
802,625	+		GFF814	0.38	-0.7
802,625	+		GFF814	0.38	-1.1
802,633	-		GFF814	0.38	-1.0
802,633	-		GFF814	0.38	-2.5
802,633	-		GFF814	0.38	-1.5
802,633	-		GFF814	0.38	-1.3
802,633	-		GFF814	0.38	-0.6
802,633	-		GFF814	0.38	-1.6
802,633	-		GFF814	0.38	+0.1
802,633	-		GFF814	0.38	-1.1
802,633	-		GFF814	0.38	-0.4
802,639	-		GFF814	0.39	-1.9
802,655	-		GFF814	0.40	-0.8
802,661	+		GFF814	0.40	-1.4
802,668	+		GFF814	0.41	-0.9
802,669	+		GFF814	0.41	-1.4
802,674	+		GFF814	0.41	-2.6
802,674	+		GFF814	0.41	-1.9
802,676	-		GFF814	0.41	-2.5
802,677	-		GFF814	0.42	-0.5
802,682	-		GFF814	0.42	-0.7
802,682	-		GFF814	0.42	-1.1
802,684	+		GFF814	0.42	-2.8
802,694	+		GFF814	0.43	-0.5
802,702	-		GFF814	0.43	-0.7
802,706	+		GFF814	0.44	-0.7
802,706	+		GFF814	0.44	-0.7
802,714	-		GFF814	0.44	-2.0
802,714	-		GFF814	0.44	-1.3
802,726	+		GFF814	0.45	-0.6
802,745	+		GFF814	0.47	-1.1
802,754	+		GFF814	0.48	-0.4
802,769	+		GFF814	0.49	+0.4
802,769	+		GFF814	0.49	-1.1
802,770	-		GFF814	0.49	-0.5
802,771	+		GFF814	0.49	-0.5
802,777	-		GFF814	0.49	-1.6
802,777	-		GFF814	0.49	-1.4
802,777	-		GFF814	0.49	-0.4
802,777	-		GFF814	0.49	-1.3
802,777	-		GFF814	0.49	-1.2
802,777	-		GFF814	0.49	-0.0
802,779	+		GFF814	0.49	-1.0
802,779	-		GFF814	0.49	-2.5
802,810	-		GFF814	0.52	-0.6
802,812	+		GFF814	0.52	-2.0
802,820	-		GFF814	0.53	-0.9
802,820	-		GFF814	0.53	-0.5
802,825	-		GFF814	0.53	-1.4
802,825	-		GFF814	0.53	-0.5
802,835	-		GFF814	0.54	-1.6
802,835	-		GFF814	0.54	-1.4
802,835	-		GFF814	0.54	-1.5
802,837	+		GFF814	0.54	-1.6
802,837	+		GFF814	0.54	-0.9
802,837	+		GFF814	0.54	-1.1
802,837	+		GFF814	0.54	-0.5
802,842	+		GFF814	0.54	-2.1
802,842	+		GFF814	0.54	-0.8
802,845	-		GFF814	0.55	-1.6
802,868	-		GFF814	0.56	-0.4
802,871	+		GFF814	0.57	-2.7
802,879	-		GFF814	0.57	-1.4
802,891	+		GFF814	0.58	-3.3
802,896	+		GFF814	0.59	-0.5
802,903	+		GFF814	0.59	-0.9
802,908	+		GFF814	0.59	-1.4
802,920	+		GFF814	0.60	-1.2
802,941	+		GFF814	0.62	-0.8
802,941	+		GFF814	0.62	-0.9
802,987	+		GFF814	0.66	-0.5
803,009	+		GFF814	0.67	-1.4
803,009	+		GFF814	0.67	-1.4
803,017	-		GFF814	0.68	-1.7
803,017	-		GFF814	0.68	-0.9
803,023	+		GFF814	0.68	-1.3
803,043	+		GFF814	0.70	-0.7
803,048	+		GFF814	0.70	-0.6
803,048	+		GFF814	0.70	-1.6
803,048	+		GFF814	0.70	+0.5
803,056	-		GFF814	0.71	-0.7
803,056	-		GFF814	0.71	-0.6
803,075	+		GFF814	0.72	-0.3
803,078	-		GFF814	0.73	-1.2
803,101	+		GFF814	0.74	-0.6
803,108	+		GFF814	0.75	-0.7
803,108	+		GFF814	0.75	-1.4
803,113	+		GFF814	0.75	-0.9
803,125	+		GFF814	0.76	-1.9
803,125	+		GFF814	0.76	-0.2
803,133	-		GFF814	0.77	-1.9
803,171	+		GFF814	0.80	-1.9
803,171	+		GFF814	0.80	-0.6
803,171	+		GFF814	0.80	-0.9
803,171	+		GFF814	0.80	-1.7
803,171	+		GFF814	0.80	-2.1
803,172	-		GFF814	0.80	-0.4
803,179	-		GFF814	0.80	-0.8
803,179	-		GFF814	0.80	-1.9
803,179	-		GFF814	0.80	-2.6
803,179	-		GFF814	0.80	-1.7
803,190	+		GFF814	0.81	-1.2
803,199	+		GFF814	0.82	-0.7
803,207	-		GFF814	0.83	-0.8
803,209	+		GFF814	0.83	-0.6
803,209	+		GFF814	0.83	-1.7
803,209	+		GFF814	0.83	-0.8
803,209	-		GFF814	0.83	-0.6
803,217	-		GFF814	0.83	-0.4
803,217	-		GFF814	0.83	-1.2
803,217	-		GFF814	0.83	-1.2
803,217	-		GFF814	0.83	-1.5
803,217	-		GFF814	0.83	-1.7
803,217	-		GFF814	0.83	-0.4
803,217	-		GFF814	0.83	-1.0
803,269	-		GFF814	0.87	-1.6
803,286	+		GFF814	0.89	-1.2
803,286	-		GFF814	0.89	-1.1
803,287	-		GFF814	0.89	-1.6
803,310	+				-0.4
803,338	+				-0.8
803,375	+				-0.4
803,380	+				-1.1
803,386	+				-1.3
803,396	+				-1.5
803,408	-				-0.6
803,413	-				-0.9
803,413	-				-0.5
803,431	+				-0.6
803,433	+				+0.5
803,440	+				-1.2
803,448	-				+0.3
803,448	-				-1.1
803,448	-				+1.8
803,457	+				-2.0
803,461	+				-0.6
803,462	+				-2.8
803,462	+				-2.3
803,462	+				-1.4
803,462	+				-0.8
803,462	+				-1.7
803,462	+				-2.2
803,462	+				-1.2
803,470	-				-0.6
803,470	-				-0.4
803,470	-				-0.2
803,473	+				-0.7
803,478	+				-0.4
803,478	+				-1.1
803,502	+				-1.8
803,510	+				-1.4
803,511	+				-0.3
803,511	+				-0.1
803,511	+				-1.2
803,511	+				-0.8
803,516	+				+0.1
803,516	+				-1.8
803,518	+				-1.1
803,518	-				-1.1
803,519	-				-2.0
803,519	-				-0.7
803,521	+				-1.9
803,524	-				-0.5
803,534	-				-0.4
803,549	-				-1.4
803,570	-				-1.8
803,570	-				-0.5
803,571	+				-0.7
803,579	-				-1.9
803,587	-				+0.3
803,590	+				+0.4
803,625	-				-1.1
803,625	-				-0.2
803,631	-				+0.4
803,639	+				+0.7
803,645	-				-0.6
803,662	-				-1.7
803,679	-				-1.0
803,725	+				+0.4
803,725	+				+0.3
803,725	+				-0.4
803,726	-				-0.6
803,733	-				+1.0
803,733	-				-2.1
803,752	+		GFF815	0.11	+0.5
803,752	+		GFF815	0.11	-0.5
803,752	+		GFF815	0.11	+0.2
803,752	+		GFF815	0.11	-0.9
803,752	+		GFF815	0.11	-0.4
803,752	+		GFF815	0.11	-1.4
803,752	+		GFF815	0.11	-0.8
803,752	+		GFF815	0.11	-1.2
803,752	+		GFF815	0.11	+0.1
803,754	+		GFF815	0.11	+0.3
803,760	-		GFF815	0.12	+1.4
803,760	-		GFF815	0.12	+0.2
803,760	-		GFF815	0.12	-1.2
803,761	+		GFF815	0.12	-1.2
803,766	-		GFF815	0.12	-1.4
803,814	-		GFF815	0.18	-0.2
803,814	-		GFF815	0.18	-1.0
803,832	-		GFF815	0.20	-0.5
803,896	+		GFF815	0.27	-2.2
803,896	+		GFF815	0.27	-0.0
803,897	-		GFF815	0.28	-1.3
803,904	-		GFF815	0.28	-1.6
803,904	-		GFF815	0.28	+0.3
803,904	-		GFF815	0.28	+0.8
803,912	+		GFF815	0.29	+0.7
803,924	+		GFF815	0.31	+0.2
803,958	+		GFF815	0.35	-0.6
803,958	+		GFF815	0.35	-0.1
803,960	+		GFF815	0.35	+0.5
803,968	-		GFF815	0.36	+1.8
803,972	+		GFF815	0.36	-0.7
803,972	+		GFF815	0.36	-0.6
803,977	+		GFF815	0.37	+1.1
803,980	-		GFF815	0.37	-1.6
803,980	-		GFF815	0.37	-0.1
803,999	+		GFF815	0.39	-0.3
804,009	-		GFF815	0.41	-0.9
804,022	+		GFF815	0.42	+0.2
804,040	-		GFF815	0.44	-0.5
804,042	+		GFF815	0.44	-0.4
804,047	+		GFF815	0.45	+0.3
804,064	-		GFF815	0.47	+0.4
804,069	+		GFF815	0.48	-0.1
804,074	+		GFF815	0.48	-3.0
804,074	+		GFF815	0.48	+1.0
804,077	-		GFF815	0.48	-0.9
804,088	+		GFF815	0.50	-1.0
804,088	+		GFF815	0.50	+1.1
804,088	+		GFF815	0.50	-0.9
804,088	+		GFF815	0.50	+0.3
804,088	+		GFF815	0.50	-0.5
804,093	+		GFF815	0.50	-1.6
804,096	-		GFF815	0.51	-1.4
804,096	-		GFF815	0.51	-0.0
804,096	-		GFF815	0.51	-1.1
804,124	+		GFF815	0.54	+0.2
804,125	+		GFF815	0.54	+0.5
804,126	-		GFF815	0.54	-1.6
804,126	-		GFF815	0.54	-0.3
804,138	-		GFF815	0.56	+0.3
804,145	-		GFF815	0.56	-0.5
804,160	+		GFF815	0.58	-0.5
804,160	+		GFF815	0.58	+0.5
804,160	+		GFF815	0.58	-1.9
804,160	+		GFF815	0.58	-0.7
804,160	+		GFF815	0.58	+0.1
804,168	-		GFF815	0.59	-0.4
804,168	-		GFF815	0.59	-0.9
804,168	-		GFF815	0.59	-0.4
804,168	-		GFF815	0.59	-0.8
804,178	-		GFF815	0.60	-0.2
804,184	+		GFF815	0.61	+0.8
804,187	-		GFF815	0.61	-2.5
804,188	-		GFF815	0.61	-0.3
804,202	-		GFF815	0.63	+0.1
804,215	+		GFF815	0.64	+0.3
804,222	+		GFF815	0.65	+0.1
804,230	-		GFF815	0.66	-1.0
804,235	+		GFF815	0.67	+0.5
804,276	-		GFF815	0.72	-1.3
804,276	-		GFF815	0.72	-0.2
804,285	+		GFF815	0.73	+0.4
804,300	-		GFF815	0.74	-1.7
804,316	+		GFF815	0.76	-0.5
804,324	-		GFF815	0.77	-0.5
804,324	-		GFF815	0.77	+0.6
804,324	-		GFF815	0.77	-0.9
804,339	+		GFF815	0.79	-1.1
804,339	+		GFF815	0.79	+0.1
804,339	+		GFF815	0.79	+0.2
804,339	+		GFF815	0.79	-0.8
804,344	+		GFF815	0.79	-1.3
804,344	+		GFF815	0.79	-0.5
804,344	+		GFF815	0.79	-0.6
804,344	+		GFF815	0.79	-0.4
804,344	+		GFF815	0.79	+1.1
804,344	+		GFF815	0.79	+0.8
804,347	-		GFF815	0.80	+1.3
804,347	-		GFF815	0.80	+0.4
804,347	-		GFF815	0.80	-1.0
804,347	-		GFF815	0.80	-0.7
804,349	+		GFF815	0.80	+1.8
804,349	+		GFF815	0.80	+0.1
804,349	+		GFF815	0.80	-0.6
804,349	+		GFF815	0.80	-0.8
804,349	+		GFF815	0.80	-1.0
804,352	-		GFF815	0.80	-1.1
804,352	-		GFF815	0.80	-0.3
804,352	-		GFF815	0.80	-0.8
804,357	-		GFF815	0.81	-0.5
804,357	-		GFF815	0.81	-0.8
804,357	-		GFF815	0.81	+0.4
804,373	+		GFF815	0.83	-0.3
804,381	-		GFF815	0.84	-1.2
804,381	-		GFF815	0.84	-0.0
804,381	-		GFF815	0.84	-0.9
804,382	+		GFF815	0.84	+0.5
804,407	-		GFF815	0.87	-2.2
804,407	-		GFF815	0.87	-0.4
804,409	+		GFF815	0.87	+0.9
804,417	-		GFF815	0.88	-0.7
804,417	-		GFF815	0.88	-0.9
804,417	-		GFF815	0.88	-0.1
804,422	-		GFF815	0.89	-2.8
804,429	+		GFF815	0.89	+0.3
804,429	+		GFF815	0.89	-0.7
804,429	+		GFF815	0.89	-1.0
804,429	+		GFF815	0.89	-2.5