Strain Fitness in Sphingobium sp. HT1-2 around GFF811

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF810 and GFF811 overlap by 38 nucleotidesGFF811 and GFF812 are separated by 155 nucleotides GFF810 - Proton/glutamate symporter @ Sodium/glutamate symporter, at 798,970 to 800,298 GFF810 GFF811 - Putative reductase, at 800,261 to 800,830 GFF811 GFF812 - hypothetical protein, at 800,986 to 801,915 GFF812 Position (kb) 800 801Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 799.263 kb on + strand, within GFF810at 799.269 kb on - strand, within GFF810at 799.271 kb on - strand, within GFF810at 799.271 kb on - strand, within GFF810at 799.287 kb on - strand, within GFF810at 799.304 kb on + strand, within GFF810at 799.305 kb on - strand, within GFF810at 799.312 kb on - strand, within GFF810at 799.312 kb on - strand, within GFF810at 799.312 kb on - strand, within GFF810at 799.322 kb on - strand, within GFF810at 799.354 kb on - strand, within GFF810at 799.358 kb on + strand, within GFF810at 799.366 kb on + strand, within GFF810at 799.366 kb on + strand, within GFF810at 799.366 kb on + strand, within GFF810at 799.374 kb on - strand, within GFF810at 799.374 kb on - strand, within GFF810at 799.374 kb on - strand, within GFF810at 799.374 kb on - strand, within GFF810at 799.374 kb on - strand, within GFF810at 799.380 kb on + strand, within GFF810at 799.381 kb on + strand, within GFF810at 799.389 kb on + strand, within GFF810at 799.407 kb on - strand, within GFF810at 799.526 kb on - strand, within GFF810at 799.531 kb on + strand, within GFF810at 799.532 kb on + strand, within GFF810at 799.537 kb on + strand, within GFF810at 799.540 kb on - strand, within GFF810at 799.552 kb on + strand, within GFF810at 799.574 kb on + strand, within GFF810at 799.578 kb on + strand, within GFF810at 799.611 kb on + strand, within GFF810at 799.655 kb on - strand, within GFF810at 799.667 kb on - strand, within GFF810at 799.675 kb on - strand, within GFF810at 799.677 kb on + strand, within GFF810at 799.685 kb on - strand, within GFF810at 799.685 kb on - strand, within GFF810at 799.716 kb on - strand, within GFF810at 799.734 kb on - strand, within GFF810at 799.741 kb on + strand, within GFF810at 799.765 kb on - strand, within GFF810at 799.768 kb on - strand, within GFF810at 799.775 kb on - strand, within GFF810at 799.777 kb on - strand, within GFF810at 799.783 kb on - strand, within GFF810at 799.785 kb on - strand, within GFF810at 799.831 kb on + strand, within GFF810at 799.837 kb on + strand, within GFF810at 799.837 kb on + strand, within GFF810at 799.852 kb on - strand, within GFF810at 799.869 kb on + strand, within GFF810at 799.930 kb on + strand, within GFF810at 799.930 kb on + strand, within GFF810at 799.949 kb on + strand, within GFF810at 799.957 kb on - strand, within GFF810at 799.967 kb on - strand, within GFF810at 799.982 kb on + strand, within GFF810at 799.982 kb on - strand, within GFF810at 799.990 kb on + strand, within GFF810at 799.990 kb on - strand, within GFF810at 800.029 kb on - strand, within GFF810at 800.029 kb on - strand, within GFF810at 800.035 kb on - strand, within GFF810at 800.035 kb on - strand, within GFF810at 800.035 kb on - strand, within GFF810at 800.035 kb on - strand, within GFF810at 800.104 kb on + strand, within GFF810at 800.159 kb on + strand, within GFF810at 800.159 kb on + strand, within GFF810at 800.159 kb on + strand, within GFF810at 800.164 kb on + strand, within GFF810at 800.167 kb on - strandat 800.167 kb on - strandat 800.170 kb on + strandat 800.201 kb on - strandat 800.238 kb on + strandat 800.289 kb on + strandat 800.289 kb on + strandat 800.289 kb on + strandat 800.289 kb on + strandat 800.291 kb on + strandat 800.291 kb on + strandat 800.297 kb on - strandat 800.322 kb on + strand, within GFF811at 800.349 kb on + strand, within GFF811at 800.349 kb on + strand, within GFF811at 800.350 kb on - strand, within GFF811at 800.350 kb on - strand, within GFF811at 800.355 kb on + strand, within GFF811at 800.355 kb on + strand, within GFF811at 800.359 kb on + strand, within GFF811at 800.367 kb on - strand, within GFF811at 800.386 kb on - strand, within GFF811at 800.402 kb on - strand, within GFF811at 800.402 kb on - strand, within GFF811at 800.402 kb on - strand, within GFF811at 800.468 kb on - strand, within GFF811at 800.468 kb on - strand, within GFF811at 800.490 kb on - strand, within GFF811at 800.580 kb on - strand, within GFF811at 800.643 kb on + strand, within GFF811at 800.662 kb on + strand, within GFF811at 800.678 kb on - strand, within GFF811at 800.704 kb on + strand, within GFF811at 800.714 kb on + strand, within GFF811at 800.717 kb on - strand, within GFF811at 800.719 kb on + strand, within GFF811at 800.727 kb on + strand, within GFF811at 800.727 kb on - strand, within GFF811at 800.739 kb on - strand, within GFF811at 800.748 kb on - strand, within GFF811at 800.748 kb on - strand, within GFF811at 800.748 kb on - strand, within GFF811at 800.748 kb on - strand, within GFF811at 800.778 kb on - strandat 800.778 kb on - strandat 800.802 kb on - strandat 800.826 kb on + strandat 800.836 kb on + strandat 800.838 kb on + strandat 800.867 kb on - strandat 800.883 kb on + strandat 800.883 kb on + strandat 800.993 kb on + strandat 800.993 kb on + strandat 800.999 kb on - strandat 801.006 kb on + strandat 801.011 kb on + strandat 801.011 kb on + strandat 801.011 kb on + strandat 801.011 kb on + strandat 801.011 kb on + strandat 801.019 kb on - strandat 801.024 kb on - strandat 801.027 kb on + strandat 801.029 kb on - strandat 801.095 kb on + strand, within GFF812at 801.095 kb on + strand, within GFF812at 801.095 kb on + strand, within GFF812at 801.103 kb on - strand, within GFF812at 801.123 kb on - strand, within GFF812at 801.125 kb on - strand, within GFF812at 801.130 kb on - strand, within GFF812at 801.169 kb on - strand, within GFF812at 801.169 kb on - strand, within GFF812at 801.169 kb on - strand, within GFF812at 801.229 kb on - strand, within GFF812at 801.237 kb on - strand, within GFF812at 801.254 kb on - strand, within GFF812at 801.254 kb on - strand, within GFF812at 801.272 kb on - strand, within GFF812at 801.425 kb on + strand, within GFF812at 801.425 kb on + strand, within GFF812at 801.433 kb on - strand, within GFF812at 801.507 kb on + strand, within GFF812at 801.521 kb on - strand, within GFF812at 801.573 kb on + strand, within GFF812at 801.618 kb on - strand, within GFF812at 801.624 kb on - strand, within GFF812at 801.755 kb on + strand, within GFF812at 801.768 kb on + strand, within GFF812

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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799,263 + GFF810 0.22 +0.6
799,269 - GFF810 0.22 +0.2
799,271 - GFF810 0.23 +0.3
799,271 - GFF810 0.23 +1.2
799,287 - GFF810 0.24 -0.0
799,304 + GFF810 0.25 -1.2
799,305 - GFF810 0.25 -0.2
799,312 - GFF810 0.26 -0.9
799,312 - GFF810 0.26 -0.6
799,312 - GFF810 0.26 +0.3
799,322 - GFF810 0.26 -0.2
799,354 - GFF810 0.29 -1.0
799,358 + GFF810 0.29 -0.4
799,366 + GFF810 0.30 +0.3
799,366 + GFF810 0.30 +1.1
799,366 + GFF810 0.30 -1.9
799,374 - GFF810 0.30 +0.1
799,374 - GFF810 0.30 -1.0
799,374 - GFF810 0.30 -1.6
799,374 - GFF810 0.30 -0.1
799,374 - GFF810 0.30 -0.6
799,380 + GFF810 0.31 -0.7
799,381 + GFF810 0.31 +0.1
799,389 + GFF810 0.32 -0.7
799,407 - GFF810 0.33 +0.9
799,526 - GFF810 0.42 +0.4
799,531 + GFF810 0.42 -0.3
799,532 + GFF810 0.42 +0.3
799,537 + GFF810 0.43 +1.2
799,540 - GFF810 0.43 +0.5
799,552 + GFF810 0.44 -0.5
799,574 + GFF810 0.45 +0.6
799,578 + GFF810 0.46 -0.7
799,611 + GFF810 0.48 +1.4
799,655 - GFF810 0.52 +0.1
799,667 - GFF810 0.52 -0.2
799,675 - GFF810 0.53 +0.8
799,677 + GFF810 0.53 +0.9
799,685 - GFF810 0.54 +0.9
799,685 - GFF810 0.54 +0.8
799,716 - GFF810 0.56 +0.1
799,734 - GFF810 0.57 +0.9
799,741 + GFF810 0.58 +0.5
799,765 - GFF810 0.60 +0.7
799,768 - GFF810 0.60 +2.4
799,775 - GFF810 0.61 +0.7
799,777 - GFF810 0.61 +0.1
799,783 - GFF810 0.61 +1.6
799,785 - GFF810 0.61 -0.4
799,831 + GFF810 0.65 +0.8
799,837 + GFF810 0.65 -0.3
799,837 + GFF810 0.65 +0.4
799,852 - GFF810 0.66 -0.1
799,869 + GFF810 0.68 +1.2
799,930 + GFF810 0.72 -0.9
799,930 + GFF810 0.72 +0.4
799,949 + GFF810 0.74 +1.5
799,957 - GFF810 0.74 +1.0
799,967 - GFF810 0.75 -0.5
799,982 + GFF810 0.76 -1.2
799,982 - GFF810 0.76 +1.3
799,990 + GFF810 0.77 +0.1
799,990 - GFF810 0.77 +0.2
800,029 - GFF810 0.80 -0.4
800,029 - GFF810 0.80 -0.5
800,035 - GFF810 0.80 -0.9
800,035 - GFF810 0.80 +1.2
800,035 - GFF810 0.80 +0.5
800,035 - GFF810 0.80 -0.6
800,104 + GFF810 0.85 +0.5
800,159 + GFF810 0.89 -2.9
800,159 + GFF810 0.89 -1.9
800,159 + GFF810 0.89 +0.2
800,164 + GFF810 0.90 -1.4
800,167 - +0.7
800,167 - +0.4
800,170 + +0.4
800,201 - -0.8
800,238 + -1.2
800,289 + -0.6
800,289 + +1.0
800,289 + -0.1
800,289 + +1.2
800,291 + -1.2
800,291 + +0.2
800,297 - -0.5
800,322 + GFF811 0.11 +1.1
800,349 + GFF811 0.15 +0.0
800,349 + GFF811 0.15 -0.1
800,350 - GFF811 0.16 -1.3
800,350 - GFF811 0.16 -0.3
800,355 + GFF811 0.16 -0.3
800,355 + GFF811 0.16 -0.3
800,359 + GFF811 0.17 -0.3
800,367 - GFF811 0.19 +0.7
800,386 - GFF811 0.22 -1.0
800,402 - GFF811 0.25 +0.4
800,402 - GFF811 0.25 -0.3
800,402 - GFF811 0.25 +0.2
800,468 - GFF811 0.36 -1.7
800,468 - GFF811 0.36 +0.2
800,490 - GFF811 0.40 -0.7
800,580 - GFF811 0.56 -0.0
800,643 + GFF811 0.67 -0.7
800,662 + GFF811 0.70 +0.6
800,678 - GFF811 0.73 +0.9
800,704 + GFF811 0.78 +0.1
800,714 + GFF811 0.79 -0.4
800,717 - GFF811 0.80 -0.7
800,719 + GFF811 0.80 +0.3
800,727 + GFF811 0.82 +0.2
800,727 - GFF811 0.82 -0.4
800,739 - GFF811 0.84 -1.2
800,748 - GFF811 0.85 +2.1
800,748 - GFF811 0.85 +0.8
800,748 - GFF811 0.85 -1.2
800,748 - GFF811 0.85 -0.9
800,778 - +0.2
800,778 - -1.1
800,802 - -0.9
800,826 + -1.1
800,836 + -1.0
800,838 + -0.1
800,867 - -0.7
800,883 + -0.9
800,883 + -0.5
800,993 + -0.2
800,993 + +0.8
800,999 - +0.1
801,006 + +0.6
801,011 + -1.2
801,011 + +0.7
801,011 + -0.1
801,011 + +0.7
801,011 + -1.2
801,019 - -0.7
801,024 - +0.1
801,027 + -1.1
801,029 - +1.1
801,095 + GFF812 0.12 +0.4
801,095 + GFF812 0.12 -0.1
801,095 + GFF812 0.12 -0.2
801,103 - GFF812 0.13 -0.0
801,123 - GFF812 0.15 -0.8
801,125 - GFF812 0.15 +1.0
801,130 - GFF812 0.15 -1.5
801,169 - GFF812 0.20 -0.0
801,169 - GFF812 0.20 +0.9
801,169 - GFF812 0.20 -0.1
801,229 - GFF812 0.26 -0.6
801,237 - GFF812 0.27 -1.5
801,254 - GFF812 0.29 +0.5
801,254 - GFF812 0.29 +0.1
801,272 - GFF812 0.31 -1.1
801,425 + GFF812 0.47 -0.9
801,425 + GFF812 0.47 -0.4
801,433 - GFF812 0.48 +2.4
801,507 + GFF812 0.56 +0.1
801,521 - GFF812 0.58 -1.1
801,573 + GFF812 0.63 -1.4
801,618 - GFF812 0.68 -0.3
801,624 - GFF812 0.69 +0.3
801,755 + GFF812 0.83 -0.1
801,768 + GFF812 0.84 -0.0

Or see this region's nucleotide sequence