Strain Fitness in Sphingobium sp. HT1-2 around GFF610

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF609 and GFF610 overlap by 4 nucleotidesGFF610 and GFF611 are separated by 14 nucleotides GFF609 - Carbon starvation protein A, at 609,540 to 611,588 GFF609 GFF610 - Uncharacterized proteins YbdD and YjiX, at 611,585 to 611,770 GFF610 GFF611 - Dehydrogenase molybdenum cofactor insertion protein, XdhC/CoxF family, at 611,785 to 612,702 GFF611 Position (kb) 611 612Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 610.604 kb on - strand, within GFF609at 610.637 kb on + strand, within GFF609at 610.640 kb on - strand, within GFF609at 610.645 kb on - strand, within GFF609at 610.688 kb on - strand, within GFF609at 610.688 kb on - strand, within GFF609at 610.717 kb on - strand, within GFF609at 610.727 kb on + strand, within GFF609at 610.732 kb on + strand, within GFF609at 610.732 kb on + strand, within GFF609at 610.735 kb on - strand, within GFF609at 610.735 kb on - strand, within GFF609at 610.737 kb on + strand, within GFF609at 610.740 kb on - strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.786 kb on + strand, within GFF609at 610.794 kb on - strand, within GFF609at 610.794 kb on - strand, within GFF609at 610.794 kb on - strand, within GFF609at 610.794 kb on - strand, within GFF609at 610.794 kb on - strand, within GFF609at 610.807 kb on - strand, within GFF609at 610.921 kb on - strand, within GFF609at 610.954 kb on - strand, within GFF609at 610.954 kb on - strand, within GFF609at 610.954 kb on - strand, within GFF609at 610.999 kb on + strand, within GFF609at 611.038 kb on + strand, within GFF609at 611.046 kb on - strand, within GFF609at 611.050 kb on + strand, within GFF609at 611.058 kb on + strand, within GFF609at 611.077 kb on + strand, within GFF609at 611.090 kb on - strand, within GFF609at 611.092 kb on + strand, within GFF609at 611.105 kb on - strand, within GFF609at 611.114 kb on + strand, within GFF609at 611.129 kb on - strand, within GFF609at 611.152 kb on - strand, within GFF609at 611.158 kb on + strand, within GFF609at 611.163 kb on + strand, within GFF609at 611.171 kb on - strand, within GFF609at 611.200 kb on + strand, within GFF609at 611.200 kb on + strand, within GFF609at 611.233 kb on - strand, within GFF609at 611.252 kb on - strand, within GFF609at 611.254 kb on + strand, within GFF609at 611.273 kb on - strand, within GFF609at 611.280 kb on + strand, within GFF609at 611.293 kb on - strand, within GFF609at 611.303 kb on - strand, within GFF609at 611.318 kb on + strand, within GFF609at 611.358 kb on + strand, within GFF609at 611.363 kb on + strand, within GFF609at 611.373 kb on + strand, within GFF609at 611.373 kb on + strand, within GFF609at 611.373 kb on + strand, within GFF609at 611.373 kb on + strand, within GFF609at 611.373 kb on + strand, within GFF609at 611.378 kb on + strand, within GFF609at 611.378 kb on + strand, within GFF609at 611.378 kb on + strand, within GFF609at 611.378 kb on + strand, within GFF609at 611.381 kb on - strand, within GFF609at 611.381 kb on - strand, within GFF609at 611.381 kb on - strand, within GFF609at 611.384 kb on + strandat 611.384 kb on + strandat 611.386 kb on - strandat 611.386 kb on - strandat 611.392 kb on - strandat 611.392 kb on - strandat 611.438 kb on - strandat 611.441 kb on - strandat 611.449 kb on - strandat 611.462 kb on + strandat 611.491 kb on + strandat 611.491 kb on - strandat 611.498 kb on + strandat 611.508 kb on + strandat 611.508 kb on + strandat 611.516 kb on - strandat 611.518 kb on + strandat 611.526 kb on - strandat 611.573 kb on + strandat 611.581 kb on - strandat 611.606 kb on + strand, within GFF610at 611.611 kb on + strand, within GFF610at 611.678 kb on + strand, within GFF610at 611.682 kb on - strand, within GFF610at 611.686 kb on - strand, within GFF610at 611.686 kb on - strand, within GFF610at 611.727 kb on - strand, within GFF610at 611.739 kb on + strand, within GFF610at 611.742 kb on - strand, within GFF610at 611.788 kb on + strandat 611.797 kb on - strandat 611.822 kb on - strandat 611.863 kb on + strandat 611.890 kb on + strand, within GFF611at 611.906 kb on + strand, within GFF611at 611.906 kb on - strand, within GFF611at 611.911 kb on + strand, within GFF611at 611.914 kb on - strand, within GFF611at 611.914 kb on - strand, within GFF611at 611.919 kb on - strand, within GFF611at 611.926 kb on + strand, within GFF611at 611.935 kb on - strand, within GFF611at 611.935 kb on - strand, within GFF611at 611.960 kb on - strand, within GFF611at 611.967 kb on - strand, within GFF611at 611.967 kb on - strand, within GFF611at 612.014 kb on - strand, within GFF611at 612.020 kb on + strand, within GFF611at 612.027 kb on + strand, within GFF611at 612.027 kb on + strand, within GFF611at 612.032 kb on + strand, within GFF611at 612.077 kb on - strand, within GFF611at 612.143 kb on + strand, within GFF611at 612.162 kb on + strand, within GFF611at 612.170 kb on - strand, within GFF611at 612.176 kb on + strand, within GFF611at 612.176 kb on + strand, within GFF611at 612.176 kb on + strand, within GFF611at 612.184 kb on - strand, within GFF611at 612.219 kb on - strand, within GFF611at 612.235 kb on - strand, within GFF611at 612.244 kb on + strand, within GFF611at 612.249 kb on + strand, within GFF611at 612.252 kb on - strand, within GFF611at 612.277 kb on + strand, within GFF611at 612.282 kb on + strand, within GFF611at 612.285 kb on - strand, within GFF611at 612.292 kb on - strand, within GFF611at 612.294 kb on + strand, within GFF611at 612.294 kb on + strand, within GFF611at 612.294 kb on + strand, within GFF611at 612.299 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.304 kb on + strand, within GFF611at 612.307 kb on - strand, within GFF611at 612.311 kb on + strand, within GFF611at 612.311 kb on + strand, within GFF611at 612.312 kb on - strand, within GFF611at 612.312 kb on - strand, within GFF611at 612.312 kb on - strand, within GFF611at 612.312 kb on - strand, within GFF611at 612.317 kb on - strand, within GFF611at 612.364 kb on + strand, within GFF611at 612.369 kb on + strand, within GFF611at 612.377 kb on - strand, within GFF611at 612.384 kb on - strand, within GFF611at 612.388 kb on - strand, within GFF611at 612.388 kb on - strand, within GFF611at 612.396 kb on - strand, within GFF611at 612.410 kb on - strand, within GFF611at 612.415 kb on + strand, within GFF611at 612.418 kb on - strand, within GFF611at 612.418 kb on - strand, within GFF611at 612.423 kb on - strand, within GFF611at 612.425 kb on + strand, within GFF611at 612.502 kb on + strand, within GFF611at 612.502 kb on + strand, within GFF611at 612.525 kb on - strand, within GFF611at 612.525 kb on - strand, within GFF611at 612.559 kb on - strand, within GFF611at 612.564 kb on - strand, within GFF611at 612.579 kb on - strand, within GFF611at 612.625 kb on + strandat 612.630 kb on - strandat 612.630 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.633 kb on - strandat 612.634 kb on - strandat 612.640 kb on - strandat 612.640 kb on - strandat 612.689 kb on + strandat 612.711 kb on - strandat 612.770 kb on + strandat 612.770 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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610,604 - GFF609 0.52 -1.2
610,637 + GFF609 0.54 -0.6
610,640 - GFF609 0.54 +0.2
610,645 - GFF609 0.54 +1.5
610,688 - GFF609 0.56 +1.4
610,688 - GFF609 0.56 +0.2
610,717 - GFF609 0.57 +0.4
610,727 + GFF609 0.58 +1.2
610,732 + GFF609 0.58 -1.0
610,732 + GFF609 0.58 +0.4
610,735 - GFF609 0.58 -0.4
610,735 - GFF609 0.58 -2.5
610,737 + GFF609 0.58 -0.9
610,740 - GFF609 0.59 -1.9
610,786 + GFF609 0.61 -0.0
610,786 + GFF609 0.61 +0.0
610,786 + GFF609 0.61 +0.2
610,786 + GFF609 0.61 -1.3
610,786 + GFF609 0.61 -1.5
610,786 + GFF609 0.61 +0.2
610,786 + GFF609 0.61 +0.4
610,786 + GFF609 0.61 -1.7
610,786 + GFF609 0.61 +1.2
610,794 - GFF609 0.61 +0.9
610,794 - GFF609 0.61 +0.8
610,794 - GFF609 0.61 -1.6
610,794 - GFF609 0.61 -0.5
610,794 - GFF609 0.61 +1.5
610,807 - GFF609 0.62 +0.6
610,921 - GFF609 0.67 -1.1
610,954 - GFF609 0.69 -1.3
610,954 - GFF609 0.69 +0.8
610,954 - GFF609 0.69 +0.3
610,999 + GFF609 0.71 +0.0
611,038 + GFF609 0.73 -2.3
611,046 - GFF609 0.73 -0.5
611,050 + GFF609 0.74 -1.4
611,058 + GFF609 0.74 +0.3
611,077 + GFF609 0.75 -0.2
611,090 - GFF609 0.76 -0.3
611,092 + GFF609 0.76 -1.4
611,105 - GFF609 0.76 -0.4
611,114 + GFF609 0.77 -0.5
611,129 - GFF609 0.78 -1.8
611,152 - GFF609 0.79 +0.0
611,158 + GFF609 0.79 -1.0
611,163 + GFF609 0.79 -1.2
611,171 - GFF609 0.80 +0.6
611,200 + GFF609 0.81 -0.5
611,200 + GFF609 0.81 -1.4
611,233 - GFF609 0.83 -0.4
611,252 - GFF609 0.84 -0.8
611,254 + GFF609 0.84 -1.2
611,273 - GFF609 0.85 +1.0
611,280 + GFF609 0.85 +1.9
611,293 - GFF609 0.86 -1.2
611,303 - GFF609 0.86 +1.0
611,318 + GFF609 0.87 -1.6
611,358 + GFF609 0.89 -0.2
611,363 + GFF609 0.89 -1.5
611,373 + GFF609 0.89 +0.6
611,373 + GFF609 0.89 +0.5
611,373 + GFF609 0.89 -0.4
611,373 + GFF609 0.89 -2.0
611,373 + GFF609 0.89 +0.1
611,378 + GFF609 0.90 +1.1
611,378 + GFF609 0.90 -3.1
611,378 + GFF609 0.90 +0.1
611,378 + GFF609 0.90 -1.4
611,381 - GFF609 0.90 -1.4
611,381 - GFF609 0.90 +0.2
611,381 - GFF609 0.90 -0.6
611,384 + -0.6
611,384 + +0.2
611,386 - -0.1
611,386 - +0.4
611,392 - +0.6
611,392 - -1.1
611,438 - +0.0
611,441 - -1.2
611,449 - -1.2
611,462 + -0.5
611,491 + -0.1
611,491 - +0.8
611,498 + -1.9
611,508 + +1.0
611,508 + -0.2
611,516 - -0.8
611,518 + -0.9
611,526 - +0.6
611,573 + -0.4
611,581 - -0.1
611,606 + GFF610 0.11 -2.0
611,611 + GFF610 0.14 -2.0
611,678 + GFF610 0.50 +0.3
611,682 - GFF610 0.52 -0.1
611,686 - GFF610 0.54 -0.9
611,686 - GFF610 0.54 -0.8
611,727 - GFF610 0.76 -1.7
611,739 + GFF610 0.83 -1.4
611,742 - GFF610 0.84 -1.2
611,788 + -1.1
611,797 - +0.2
611,822 - -1.7
611,863 + -1.0
611,890 + GFF611 0.11 -0.9
611,906 + GFF611 0.13 +0.2
611,906 - GFF611 0.13 -2.2
611,911 + GFF611 0.14 -0.6
611,914 - GFF611 0.14 -1.6
611,914 - GFF611 0.14 -1.7
611,919 - GFF611 0.15 +1.9
611,926 + GFF611 0.15 +1.8
611,935 - GFF611 0.16 -0.0
611,935 - GFF611 0.16 +0.2
611,960 - GFF611 0.19 +0.6
611,967 - GFF611 0.20 -0.2
611,967 - GFF611 0.20 -1.3
612,014 - GFF611 0.25 -1.1
612,020 + GFF611 0.26 -2.0
612,027 + GFF611 0.26 -0.7
612,027 + GFF611 0.26 +0.7
612,032 + GFF611 0.27 -0.9
612,077 - GFF611 0.32 -0.5
612,143 + GFF611 0.39 +0.2
612,162 + GFF611 0.41 +0.3
612,170 - GFF611 0.42 -2.2
612,176 + GFF611 0.43 -0.3
612,176 + GFF611 0.43 +1.0
612,176 + GFF611 0.43 +0.1
612,184 - GFF611 0.43 -1.4
612,219 - GFF611 0.47 +0.4
612,235 - GFF611 0.49 -1.4
612,244 + GFF611 0.50 -0.1
612,249 + GFF611 0.51 +1.2
612,252 - GFF611 0.51 -2.1
612,277 + GFF611 0.54 -0.9
612,282 + GFF611 0.54 -2.0
612,285 - GFF611 0.54 -0.7
612,292 - GFF611 0.55 +1.3
612,294 + GFF611 0.55 +0.2
612,294 + GFF611 0.55 -0.2
612,294 + GFF611 0.55 -1.9
612,299 + GFF611 0.56 -0.7
612,304 + GFF611 0.57 +0.3
612,304 + GFF611 0.57 -1.2
612,304 + GFF611 0.57 -0.8
612,304 + GFF611 0.57 -0.2
612,304 + GFF611 0.57 -0.8
612,304 + GFF611 0.57 +1.9
612,304 + GFF611 0.57 -3.1
612,304 + GFF611 0.57 -0.5
612,304 + GFF611 0.57 -0.8
612,304 + GFF611 0.57 -0.7
612,304 + GFF611 0.57 -0.7
612,307 - GFF611 0.57 -1.8
612,311 + GFF611 0.57 -0.9
612,311 + GFF611 0.57 +0.6
612,312 - GFF611 0.57 +0.2
612,312 - GFF611 0.57 -0.8
612,312 - GFF611 0.57 +1.3
612,312 - GFF611 0.57 -0.5
612,317 - GFF611 0.58 +1.7
612,364 + GFF611 0.63 +0.1
612,369 + GFF611 0.64 -0.0
612,377 - GFF611 0.64 +0.4
612,384 - GFF611 0.65 -1.1
612,388 - GFF611 0.66 +0.0
612,388 - GFF611 0.66 -0.8
612,396 - GFF611 0.67 -0.6
612,410 - GFF611 0.68 -0.4
612,415 + GFF611 0.69 +0.6
612,418 - GFF611 0.69 -0.4
612,418 - GFF611 0.69 -0.8
612,423 - GFF611 0.69 -1.7
612,425 + GFF611 0.70 -0.6
612,502 + GFF611 0.78 -1.0
612,502 + GFF611 0.78 -1.5
612,525 - GFF611 0.81 -1.3
612,525 - GFF611 0.81 -0.2
612,559 - GFF611 0.84 +0.1
612,564 - GFF611 0.85 -0.0
612,579 - GFF611 0.86 -0.6
612,625 + -1.2
612,630 - -2.0
612,630 - -0.7
612,633 - +0.1
612,633 - +0.2
612,633 - -1.2
612,633 - -0.4
612,633 - -0.9
612,634 - +0.2
612,640 - +0.9
612,640 - -0.1
612,689 + -0.0
612,711 - -0.2
612,770 + +1.6
612,770 + -0.8

Or see this region's nucleotide sequence