Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF571 and GFF572 are separated by 585 nucleotides GFF572 and GFF573 are separated by 146 nucleotides GFF573 and GFF574 overlap by 44 nucleotides GFF574 and GFF575 are separated by 90 nucleotides
GFF571 - hypothetical protein, at 568,752 to 569,807
GFF571
GFF572 - tRNA-Ser-CGA, at 570,393 to 570,482
GFF572
GFF573 - hypothetical protein, at 570,629 to 571,000
GFF573
GFF574 - hypothetical protein, at 570,957 to 571,745
GFF574
GFF575 - oligopeptide transporter, at 571,836 to 573,800
GFF575
Position (kb) 570
571
572 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 569.659 kb on + strand, within GFF571 at 569.667 kb on - strand, within GFF571 at 569.714 kb on + strand at 569.717 kb on + strand at 569.717 kb on + strand at 569.722 kb on - strand at 569.725 kb on - strand at 569.725 kb on - strand at 569.728 kb on + strand at 569.761 kb on - strand at 569.798 kb on - strand at 569.824 kb on - strand at 569.841 kb on - strand at 569.878 kb on + strand at 569.947 kb on - strand at 569.965 kb on - strand at 570.000 kb on + strand at 570.025 kb on + strand at 570.032 kb on - strand at 570.033 kb on + strand at 570.033 kb on - strand at 570.039 kb on + strand at 570.045 kb on + strand at 570.047 kb on - strand at 570.065 kb on - strand at 570.082 kb on - strand at 570.095 kb on - strand at 570.095 kb on - strand at 570.105 kb on + strand at 570.115 kb on - strand at 570.118 kb on + strand at 570.126 kb on - strand at 570.129 kb on - strand at 570.133 kb on + strand at 570.133 kb on + strand at 570.140 kb on + strand at 570.148 kb on - strand at 570.196 kb on - strand at 570.201 kb on + strand at 570.207 kb on - strand at 570.214 kb on - strand at 570.216 kb on + strand at 570.224 kb on - strand at 570.259 kb on + strand at 570.259 kb on + strand at 570.312 kb on + strand at 570.614 kb on + strand at 570.621 kb on - strand at 570.622 kb on - strand at 570.626 kb on - strand at 570.641 kb on + strand at 570.666 kb on + strand at 570.689 kb on - strand, within GFF573 at 570.699 kb on + strand, within GFF573 at 570.710 kb on - strand, within GFF573 at 570.723 kb on + strand, within GFF573 at 570.726 kb on - strand, within GFF573 at 570.731 kb on - strand, within GFF573 at 570.743 kb on + strand, within GFF573 at 570.745 kb on + strand, within GFF573 at 570.748 kb on - strand, within GFF573 at 570.758 kb on - strand, within GFF573 at 570.761 kb on + strand, within GFF573 at 570.769 kb on - strand, within GFF573 at 570.783 kb on + strand, within GFF573 at 570.784 kb on - strand, within GFF573 at 570.791 kb on - strand, within GFF573 at 570.803 kb on - strand, within GFF573 at 570.813 kb on - strand, within GFF573 at 570.813 kb on - strand, within GFF573 at 570.836 kb on - strand, within GFF573 at 570.839 kb on - strand, within GFF573 at 570.862 kb on + strand, within GFF573 at 570.862 kb on + strand, within GFF573 at 570.870 kb on - strand, within GFF573 at 570.870 kb on - strand, within GFF573 at 570.909 kb on + strand, within GFF573 at 570.909 kb on + strand, within GFF573 at 570.912 kb on - strand, within GFF573 at 570.946 kb on + strand, within GFF573 at 570.994 kb on + strand at 570.994 kb on + strand at 570.997 kb on - strand at 570.999 kb on + strand at 570.999 kb on + strand at 571.007 kb on - strand at 571.017 kb on + strand at 571.017 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.024 kb on + strand at 571.025 kb on - strand at 571.029 kb on + strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.032 kb on - strand at 571.042 kb on - strand, within GFF574 at 571.055 kb on + strand, within GFF574 at 571.055 kb on + strand, within GFF574 at 571.063 kb on - strand, within GFF574 at 571.071 kb on - strand, within GFF574 at 571.084 kb on + strand, within GFF574 at 571.092 kb on - strand, within GFF574 at 571.094 kb on + strand, within GFF574 at 571.099 kb on + strand, within GFF574 at 571.099 kb on + strand, within GFF574 at 571.100 kb on + strand, within GFF574 at 571.102 kb on - strand, within GFF574 at 571.102 kb on - strand, within GFF574 at 571.102 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.117 kb on - strand, within GFF574 at 571.125 kb on + strand, within GFF574 at 571.125 kb on + strand, within GFF574 at 571.127 kb on - strand, within GFF574 at 571.182 kb on + strand, within GFF574 at 571.202 kb on + strand, within GFF574 at 571.202 kb on + strand, within GFF574 at 571.213 kb on + strand, within GFF574 at 571.221 kb on - strand, within GFF574 at 571.221 kb on - strand, within GFF574 at 571.221 kb on - strand, within GFF574 at 571.235 kb on + strand, within GFF574 at 571.235 kb on + strand, within GFF574 at 571.235 kb on + strand, within GFF574 at 571.236 kb on + strand, within GFF574 at 571.243 kb on - strand, within GFF574 at 571.246 kb on + strand, within GFF574 at 571.266 kb on - strand, within GFF574 at 571.266 kb on - strand, within GFF574 at 571.294 kb on + strand, within GFF574 at 571.294 kb on + strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.302 kb on - strand, within GFF574 at 571.310 kb on - strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.328 kb on + strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.336 kb on - strand, within GFF574 at 571.346 kb on + strand, within GFF574 at 571.360 kb on + strand, within GFF574 at 571.393 kb on + strand, within GFF574 at 571.397 kb on + strand, within GFF574 at 571.397 kb on + strand, within GFF574 at 571.400 kb on - strand, within GFF574 at 571.400 kb on - strand, within GFF574 at 571.405 kb on - strand, within GFF574 at 571.405 kb on - strand, within GFF574 at 571.416 kb on + strand, within GFF574 at 571.417 kb on + strand, within GFF574 at 571.417 kb on + strand, within GFF574 at 571.421 kb on + strand, within GFF574 at 571.430 kb on - strand, within GFF574 at 571.436 kb on + strand, within GFF574 at 571.450 kb on + strand, within GFF574 at 571.454 kb on - strand, within GFF574 at 571.458 kb on - strand, within GFF574 at 571.458 kb on - strand, within GFF574 at 571.477 kb on + strand, within GFF574 at 571.479 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.483 kb on + strand, within GFF574 at 571.487 kb on - strand, within GFF574 at 571.487 kb on - strand, within GFF574 at 571.487 kb on - strand, within GFF574 at 571.539 kb on + strand, within GFF574 at 571.550 kb on + strand, within GFF574 at 571.557 kb on + strand, within GFF574 at 571.602 kb on + strand, within GFF574 at 571.621 kb on - strand, within GFF574 at 571.623 kb on + strand, within GFF574 at 571.623 kb on + strand, within GFF574 at 571.626 kb on - strand, within GFF574 at 571.628 kb on + strand, within GFF574 at 571.628 kb on + strand, within GFF574 at 571.631 kb on - strand, within GFF574 at 571.631 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.636 kb on - strand, within GFF574 at 571.663 kb on + strand, within GFF574 at 571.663 kb on + strand, within GFF574 at 571.671 kb on - strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.675 kb on + strand at 571.679 kb on - strand at 571.683 kb on - strand at 571.683 kb on - strand at 571.683 kb on - strand at 571.683 kb on - strand at 571.685 kb on + strand at 571.693 kb on - strand at 571.693 kb on - strand at 571.693 kb on - strand at 571.695 kb on + strand at 571.696 kb on + strand at 571.696 kb on + strand at 571.696 kb on + strand at 571.704 kb on - strand at 571.705 kb on + strand at 571.708 kb on - strand at 571.708 kb on - strand at 571.710 kb on + strand at 571.713 kb on - strand at 571.713 kb on - strand at 571.715 kb on + strand at 571.718 kb on - strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.761 kb on + strand at 571.769 kb on - strand at 571.769 kb on - strand at 571.769 kb on - strand at 571.774 kb on - strand at 571.850 kb on + strand at 571.850 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 569,659 + GFF571 0.86 -0.8 569,667 - GFF571 0.87 -0.4 569,714 + -0.5 569,717 + -0.6 569,717 + -2.1 569,722 - +0.5 569,725 - +0.4 569,725 - +0.2 569,728 + -0.9 569,761 - -0.7 569,798 - +0.3 569,824 - -0.6 569,841 - -0.5 569,878 + -0.8 569,947 - -1.9 569,965 - -0.8 570,000 + -0.4 570,025 + -1.7 570,032 - +0.3 570,033 + -0.4 570,033 - -0.5 570,039 + +0.1 570,045 + +1.4 570,047 - +0.5 570,065 - -0.2 570,082 - -0.4 570,095 - -0.9 570,095 - -1.2 570,105 + -0.2 570,115 - -1.2 570,118 + -1.0 570,126 - -0.2 570,129 - +1.1 570,133 + +0.5 570,133 + -0.3 570,140 + -1.3 570,148 - +0.7 570,196 - -0.2 570,201 + -0.2 570,207 - -0.7 570,214 - +0.6 570,216 + -1.9 570,224 - +1.0 570,259 + -0.9 570,259 + +0.9 570,312 + -0.4 570,614 + +0.1 570,621 - -0.6 570,622 - -0.5 570,626 - -1.7 570,641 + -0.0 570,666 + +0.9 570,689 - GFF573 0.16 +0.1 570,699 + GFF573 0.19 -0.3 570,710 - GFF573 0.22 -0.6 570,723 + GFF573 0.25 +0.7 570,726 - GFF573 0.26 +0.2 570,731 - GFF573 0.27 -1.3 570,743 + GFF573 0.31 -1.1 570,745 + GFF573 0.31 +1.3 570,748 - GFF573 0.32 -0.4 570,758 - GFF573 0.35 +0.6 570,761 + GFF573 0.35 -2.1 570,769 - GFF573 0.38 -1.2 570,783 + GFF573 0.41 +0.0 570,784 - GFF573 0.42 -0.1 570,791 - GFF573 0.44 +0.4 570,803 - GFF573 0.47 -0.9 570,813 - GFF573 0.49 -1.0 570,813 - GFF573 0.49 -0.6 570,836 - GFF573 0.56 -1.6 570,839 - GFF573 0.56 -0.4 570,862 + GFF573 0.63 -0.1 570,862 + GFF573 0.63 -1.3 570,870 - GFF573 0.65 -0.6 570,870 - GFF573 0.65 +0.1 570,909 + GFF573 0.75 -0.4 570,909 + GFF573 0.75 -1.7 570,912 - GFF573 0.76 -1.5 570,946 + GFF573 0.85 +1.3 570,994 + -1.1 570,994 + -0.1 570,997 - +0.3 570,999 + -0.4 570,999 + -1.2 571,007 - -1.0 571,017 + +0.5 571,017 + -1.2 571,024 + -1.3 571,024 + -1.2 571,024 + -1.9 571,024 + +0.4 571,024 + -0.7 571,024 + -2.6 571,024 + -1.4 571,024 + +1.2 571,025 - +0.5 571,029 + +0.3 571,032 - +0.1 571,032 - -0.7 571,032 - -2.2 571,032 - -0.4 571,032 - +1.2 571,042 - GFF574 0.11 +0.1 571,055 + GFF574 0.12 -1.2 571,055 + GFF574 0.12 -0.8 571,063 - GFF574 0.13 +0.5 571,071 - GFF574 0.14 +1.1 571,084 + GFF574 0.16 +0.4 571,092 - GFF574 0.17 +0.0 571,094 + GFF574 0.17 -0.8 571,099 + GFF574 0.18 -0.4 571,099 + GFF574 0.18 -0.5 571,100 + GFF574 0.18 -1.8 571,102 - GFF574 0.18 -0.6 571,102 - GFF574 0.18 -1.2 571,102 - GFF574 0.18 -1.2 571,117 - GFF574 0.20 +0.6 571,117 - GFF574 0.20 -1.3 571,117 - GFF574 0.20 -0.7 571,117 - GFF574 0.20 +1.1 571,125 + GFF574 0.21 +0.9 571,125 + GFF574 0.21 -0.9 571,127 - GFF574 0.22 -0.7 571,182 + GFF574 0.29 +0.8 571,202 + GFF574 0.31 -0.5 571,202 + GFF574 0.31 -0.3 571,213 + GFF574 0.32 +1.0 571,221 - GFF574 0.33 -1.0 571,221 - GFF574 0.33 -1.0 571,221 - GFF574 0.33 +0.4 571,235 + GFF574 0.35 -1.1 571,235 + GFF574 0.35 -1.4 571,235 + GFF574 0.35 +0.9 571,236 + GFF574 0.35 -0.0 571,243 - GFF574 0.36 -2.0 571,246 + GFF574 0.37 -0.8 571,266 - GFF574 0.39 -0.4 571,266 - GFF574 0.39 +0.2 571,294 + GFF574 0.43 -2.1 571,294 + GFF574 0.43 -0.6 571,302 - GFF574 0.44 -0.7 571,302 - GFF574 0.44 +0.6 571,302 - GFF574 0.44 -1.3 571,302 - GFF574 0.44 -0.9 571,302 - GFF574 0.44 -0.7 571,302 - GFF574 0.44 -1.7 571,310 - GFF574 0.45 +0.0 571,328 + GFF574 0.47 +0.9 571,328 + GFF574 0.47 -0.3 571,328 + GFF574 0.47 -0.1 571,328 + GFF574 0.47 -0.6 571,328 + GFF574 0.47 +0.1 571,328 + GFF574 0.47 +0.1 571,328 + GFF574 0.47 -0.3 571,336 - GFF574 0.48 -0.1 571,336 - GFF574 0.48 +1.5 571,336 - GFF574 0.48 -1.4 571,336 - GFF574 0.48 +0.9 571,336 - GFF574 0.48 +0.7 571,346 + GFF574 0.49 -0.8 571,360 + GFF574 0.51 +0.8 571,393 + GFF574 0.55 -0.9 571,397 + GFF574 0.56 -0.8 571,397 + GFF574 0.56 -0.8 571,400 - GFF574 0.56 +0.5 571,400 - GFF574 0.56 +0.1 571,405 - GFF574 0.57 -1.6 571,405 - GFF574 0.57 -2.1 571,416 + GFF574 0.58 +0.5 571,417 + GFF574 0.58 -0.6 571,417 + GFF574 0.58 -2.2 571,421 + GFF574 0.59 -0.4 571,430 - GFF574 0.60 -0.3 571,436 + GFF574 0.61 +0.2 571,450 + GFF574 0.62 -0.6 571,454 - GFF574 0.63 -0.6 571,458 - GFF574 0.63 -0.4 571,458 - GFF574 0.63 -0.1 571,477 + GFF574 0.66 -2.8 571,479 + GFF574 0.66 +0.6 571,483 + GFF574 0.67 -1.1 571,483 + GFF574 0.67 -0.2 571,483 + GFF574 0.67 -0.1 571,483 + GFF574 0.67 -0.8 571,487 - GFF574 0.67 +0.4 571,487 - GFF574 0.67 -0.2 571,487 - GFF574 0.67 +0.6 571,539 + GFF574 0.74 -0.8 571,550 + GFF574 0.75 +0.5 571,557 + GFF574 0.76 -1.2 571,602 + GFF574 0.82 -2.3 571,621 - GFF574 0.84 -1.5 571,623 + GFF574 0.84 -2.2 571,623 + GFF574 0.84 -1.0 571,626 - GFF574 0.85 +0.5 571,628 + GFF574 0.85 +0.9 571,628 + GFF574 0.85 -0.6 571,631 - GFF574 0.85 -0.9 571,631 - GFF574 0.85 -0.5 571,636 - GFF574 0.86 -1.1 571,636 - GFF574 0.86 +0.5 571,636 - GFF574 0.86 -1.4 571,636 - GFF574 0.86 +1.5 571,636 - GFF574 0.86 +0.6 571,636 - GFF574 0.86 -1.0 571,663 + GFF574 0.89 -0.3 571,663 + GFF574 0.89 +0.1 571,671 - -0.3 571,675 + -0.7 571,675 + -0.9 571,675 + -0.1 571,675 + -0.8 571,675 + -0.9 571,675 + +0.2 571,675 + -1.0 571,679 - +0.4 571,683 - -1.4 571,683 - -0.4 571,683 - +0.3 571,683 - -1.7 571,685 + +0.1 571,693 - +0.3 571,693 - -1.1 571,693 - +0.5 571,695 + +0.8 571,696 + -1.6 571,696 + +0.3 571,696 + +0.2 571,704 - +0.1 571,705 + -1.0 571,708 - +0.1 571,708 - -1.5 571,710 + -0.7 571,713 - -0.6 571,713 - -1.0 571,715 + +0.4 571,718 - -0.2 571,761 + +1.6 571,761 + +0.4 571,761 + -1.4 571,761 + -0.4 571,761 + -0.7 571,761 + +0.0 571,769 - -0.8 571,769 - -0.9 571,769 - -0.3 571,774 - +1.3 571,850 + -0.8 571,850 + +0.2
Or see this region's nucleotide sequence