Strain Fitness in Sphingobium sp. HT1-2 around GFF5387

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,367,673	-				-2.5
5,367,676	-				-0.7
5,367,691	+				-0.3
5,367,691	+				-2.4
5,367,699	-				+0.4
5,367,699	-				-2.0
5,367,699	-				+0.2
5,367,721	+				-1.7
5,367,729	+				-0.5
5,367,729	-				+0.3
5,367,729	-				+0.3
5,367,729	-				+1.6
5,367,730	-				-0.5
5,367,737	+				+0.5
5,367,737	+				-0.4
5,367,737	+				+1.3
5,367,741	+				-0.0
5,367,745	-				-0.6
5,367,745	-				-1.7
5,367,800	+				+0.4
5,367,805	+				-0.6
5,367,805	+				+0.5
5,367,805	+				-0.2
5,367,805	+				+0.1
5,367,805	+				+1.1
5,367,805	+				-1.4
5,367,805	+				+0.1
5,367,810	+				+0.3
5,367,810	+				+0.0
5,367,810	+				-0.2
5,367,810	+				+0.5
5,367,810	+				-0.2
5,367,810	+				-0.7
5,367,813	-				+0.3
5,367,813	-				-0.2
5,367,815	+				+0.1
5,367,818	-				-0.7
5,367,818	-				-1.5
5,367,818	-				-0.3
5,367,818	-				+0.8
5,367,818	-				-1.4
5,367,824	+				-0.4
5,367,830	-				+0.0
5,367,837	-				-0.8
5,367,839	+				-2.2
5,367,839	+				+0.1
5,367,839	+				-1.7
5,367,839	+				+0.1
5,367,844	+				+0.6
5,367,844	+				-1.6
5,367,844	+				-1.4
5,367,844	+				-0.9
5,367,844	+				+0.4
5,367,905	+				-2.9
5,367,910	+				-1.2
5,367,910	+				-1.1
5,367,910	+				-2.2
5,367,910	+				+0.0
5,367,910	+				-0.6
5,367,910	+				-1.9
5,367,910	+				-1.9
5,367,910	+				-1.7
5,367,910	+				+0.7
5,367,910	+				-0.4
5,367,910	+				-1.0
5,367,910	+				-1.2
5,367,910	+				-0.8
5,367,910	+				-0.6
5,367,910	+				-1.9
5,367,910	+				-1.5
5,367,910	+				-1.4
5,367,910	+				+0.4
5,367,910	+				+0.3
5,367,910	+				-0.2
5,367,910	+				-1.0
5,367,910	+				+0.6
5,367,910	+				+1.1
5,367,910	+				+1.8
5,367,912	+				-1.5
5,367,912	+				+0.3
5,367,918	-				+0.8
5,367,918	-				-0.8
5,367,918	-				-0.3
5,367,918	-				-1.1
5,367,918	-				+0.4
5,367,918	-				+1.1
5,367,918	-				-1.3
5,367,918	-				-0.4
5,367,918	-				-0.2
5,367,918	-				+0.0
5,367,918	-				-0.0
5,367,918	-				-0.7
5,367,918	-				+0.4
5,367,918	-				-1.0
5,367,918	-				-1.2
5,367,950	-				+0.0
5,367,951	-				-0.1
5,367,965	-				-0.1
5,367,998	-				+0.7
5,367,999	+				+0.7
5,367,999	-				-1.0
5,368,013	+				+0.9
5,368,016	+				+0.8
5,368,031	-				-1.3
5,368,034	+				+0.1
5,368,042	-				-0.7
5,368,050	+				-0.2
5,368,050	+				-0.6
5,368,052	-				-1.5
5,368,058	-				-0.8
5,368,079	+				-0.8
5,368,167	-				+0.1
5,368,214	-				-0.9
5,368,219	+				-0.5
5,368,221	+				+0.0
5,368,223	+				-1.2
5,368,224	+				-0.2
5,368,232	-				+0.0
5,368,236	+				-1.4
5,368,236	+				+0.1
5,368,236	+				-1.9
5,368,236	+				-1.0
5,368,236	+				+0.1
5,368,236	+				-0.6
5,368,236	+				-1.4
5,368,236	+				-1.4
5,368,236	+				-1.9
5,368,238	-				-1.6
5,368,244	-				+0.7
5,368,244	-				-0.6
5,368,244	-				-1.4
5,368,244	-				+0.5
5,368,244	-				+0.7
5,368,244	-				-0.1
5,368,244	-				+0.4
5,368,273	+				-0.5
5,368,290	+				+1.3
5,368,292	+				+0.9
5,368,292	+				-1.5
5,368,300	-				+0.3
5,368,300	-				+0.0
5,368,305	-				-0.2
5,368,332	+				-1.2
5,368,352	+				+0.7
5,368,352	+				+0.0
5,368,352	+				+1.6
5,368,352	+				+0.2
5,368,352	+				+0.1
5,368,352	+				+0.3
5,368,356	-				-0.1
5,368,360	-				-1.4
5,368,360	-				+0.3
5,368,360	-				+0.0
5,368,360	-				-0.8
5,368,360	-				-2.1
5,368,360	-				-0.7
5,368,360	-				+0.5
5,368,360	-				-0.9
5,368,360	-				-1.7
5,368,417	+				-0.4
5,368,429	+				-0.1
5,368,429	+				+0.7
5,368,437	-				+0.7
5,368,439	+				-0.9
5,368,446	+				-1.8
5,368,447	-				-0.7
5,368,447	-				-0.6
5,368,447	-				-0.2
5,368,447	-				-2.6
5,368,449	-				+0.4
5,368,451	+				-1.3
5,368,451	+				+1.0
5,368,451	+				-0.7
5,368,451	+				-0.2
5,368,460	-				+0.8
5,368,471	-				-2.0
5,368,482	+				-1.6
5,368,489	+				+0.3
5,368,489	+				-0.6
5,368,489	+				+0.7
5,368,497	-				-0.6
5,368,497	-				-1.3
5,368,508	-				-0.9
5,368,527	+				+1.8
5,368,566	+				+0.7
5,368,567	-				-0.1
5,368,568	-				-0.1
5,368,573	-				-1.4
5,368,593	+				+0.1
5,368,601	-				+1.0
5,368,609	-				-0.2
5,368,618	-				-0.0
5,368,620	+				-1.0
5,368,630	+				-0.4
5,368,630	+				-0.0
5,368,630	+				+1.3
5,368,630	+				+0.1
5,368,630	+				-0.6
5,368,638	-				-0.4
5,368,638	-				-2.0
5,368,662	-				+1.0
5,368,666	+				+0.6
5,368,687	+				-0.2
5,368,695	-				-0.9
5,368,706	+				-1.0
5,368,706	+				-0.9
5,368,706	+				+0.7
5,368,706	+				+0.3
5,368,709	-				+0.4
5,368,709	-				-0.2
5,368,709	-				-0.7
5,368,714	-				+0.9
5,368,714	-				+0.6
5,368,714	-				-1.6
5,368,714	-				+0.6
5,368,731	+		GFF5387	0.13	-0.6
5,368,742	+		GFF5387	0.14	-1.0
5,368,749	-		GFF5387	0.16	-0.1
5,368,750	-		GFF5387	0.16	-0.3
5,368,750	-		GFF5387	0.16	+0.0
5,368,753	+		GFF5387	0.16	-0.2
5,368,760	-		GFF5387	0.18	+1.1
5,368,761	-		GFF5387	0.18	-1.3
5,368,776	-		GFF5387	0.20	-2.0
5,368,778	+		GFF5387	0.21	+0.1
5,368,778	+		GFF5387	0.21	-0.9
5,368,778	+		GFF5387	0.21	+0.1
5,368,778	+		GFF5387	0.21	-0.6
5,368,778	+		GFF5387	0.21	-1.6
5,368,786	-		GFF5387	0.22	+0.1
5,368,786	-		GFF5387	0.22	-2.3
5,368,786	-		GFF5387	0.22	-0.4
5,368,786	-		GFF5387	0.22	-0.2
5,368,786	-		GFF5387	0.22	+0.3
5,368,786	-		GFF5387	0.22	+0.3
5,368,786	-		GFF5387	0.22	-0.7
5,368,787	-		GFF5387	0.22	+0.4
5,368,797	-		GFF5387	0.24	+0.1
5,368,807	-		GFF5387	0.26	+0.9
5,368,822	-		GFF5387	0.29	+0.9
5,368,836	-		GFF5387	0.31	-1.7
5,368,882	+		GFF5387	0.39	+0.5
5,368,890	-		GFF5387	0.41	+0.8
5,368,947	-		GFF5387	0.51	-0.7
5,368,947	-		GFF5387	0.51	-0.7
5,369,002	-		GFF5387	0.60	-0.4
5,369,025	+		GFF5387	0.64	-1.6
5,369,028	-		GFF5387	0.65	-0.9
5,369,029	+		GFF5387	0.65	+0.8
5,369,052	+		GFF5387	0.69	-1.4
5,369,056	-		GFF5387	0.70	-0.0
5,369,056	-		GFF5387	0.70	+0.0
5,369,069	+		GFF5387	0.72	-0.7
5,369,074	+		GFF5387	0.73	-0.4
5,369,082	+		GFF5387	0.74	-0.5
5,369,090	+		GFF5387	0.76	+1.1
5,369,092	-		GFF5387	0.76	+0.8
5,369,098	+		GFF5387	0.77	-0.4
5,369,099	-		GFF5387	0.77	+0.7
5,369,128	+		GFF5387	0.83	+0.3
5,369,130	-		GFF5387	0.83	-1.3
5,369,144	+		GFF5387	0.85	+0.3
5,369,146	+		GFF5387	0.86	+0.4
5,369,146	+		GFF5387	0.86	-0.1
5,369,146	+		GFF5387	0.86	-2.2
5,369,146	+		GFF5387	0.86	-0.3
5,369,146	+		GFF5387	0.86	-1.8
5,369,152	-		GFF5387	0.87	-1.1
5,369,152	-		GFF5387	0.87	+0.4
5,369,152	-		GFF5387	0.87	+0.3
5,369,154	-		GFF5387	0.87	-1.3
5,369,154	-		GFF5387	0.87	-2.4
5,369,154	-		GFF5387	0.87	-0.3
5,369,154	-		GFF5387	0.87	-0.3
5,369,154	-		GFF5387	0.87	-0.9
5,369,154	-		GFF5387	0.87	+0.6
5,369,154	-		GFF5387	0.87	-1.0
5,369,154	-		GFF5387	0.87	-2.0
5,369,163	+		GFF5387	0.89	+0.3
5,369,168	+		GFF5387	0.90	+1.0
5,369,168	+		GFF5387	0.90	-0.7
5,369,168	+		GFF5387	0.90	+0.6
5,369,168	+		GFF5387	0.90	-1.2
5,369,168	+		GFF5387	0.90	+0.6
5,369,168	+		GFF5387	0.90	-0.7
5,369,168	+		GFF5387	0.90	-0.7
5,369,168	+		GFF5387	0.90	+0.7
5,369,168	+		GFF5387	0.90	+1.7
5,369,168	+		GFF5387	0.90	-0.0
5,369,168	+		GFF5387	0.90	+0.3
5,369,176	-				-0.4
5,369,176	-				+0.4
5,369,176	-				-0.4
5,369,176	-				-1.0
5,369,178	+				+0.1
5,369,205	+				+0.3
5,369,213	-				-0.7
5,369,234	-				-0.1
5,369,259	+				-0.2
5,369,269	+				+0.4
5,369,270	+				-1.2
5,369,276	+				+0.9
5,369,277	-				+0.1
5,369,277	-				+1.4
5,369,277	-				+0.3
5,369,277	-				-1.1
5,369,277	-				+0.8
5,369,277	-				-0.9
5,369,277	-				+0.5
5,369,285	-				-0.9
5,369,286	-				+0.3
5,369,287	-				-0.7
5,369,307	+				-1.0
5,369,325	+		GFF5388	0.14	+0.1
5,369,325	+		GFF5388	0.14	-1.9
5,369,333	-		GFF5388	0.17	-0.9
5,369,333	-		GFF5388	0.17	-1.0
5,369,348	+		GFF5388	0.22	-1.6
5,369,348	+		GFF5388	0.22	-1.0
5,369,358	+		GFF5388	0.26	-0.9
5,369,366	-		GFF5388	0.28	+1.3
5,369,366	-		GFF5388	0.28	-0.9
5,369,389	+		GFF5388	0.36	-0.3
5,369,401	+		GFF5388	0.41	+2.3
5,369,404	-		GFF5388	0.42	-1.4
5,369,409	-		GFF5388	0.43	-0.2
5,369,428	-		GFF5388	0.50	-1.7
5,369,482	+		GFF5388	0.69	+0.7
5,369,489	-		GFF5388	0.71	-1.1
5,369,497	-		GFF5388	0.74	+0.6
5,369,519	+		GFF5388	0.82	-0.4
5,369,519	+		GFF5388	0.82	-2.6
5,369,527	-		GFF5388	0.84	+0.1
5,369,527	-		GFF5388	0.84	+0.6
5,369,527	-		GFF5388	0.84	-1.1
5,369,527	-		GFF5388	0.84	+0.8
5,369,549	-				-1.0
5,369,566	+				-0.0
5,369,566	+				+1.2
5,369,566	+				+0.0
5,369,566	+				+0.9
5,369,566	+				-0.3
5,369,566	+				-0.7
5,369,574	-				-0.4
5,369,574	-				-0.3
5,369,577	+				-0.9
5,369,577	+				+0.2
5,369,577	+				-0.2
5,369,585	-				-0.9
5,369,596	+				+0.8
5,369,596	+				-0.4
5,369,596	+				+0.1
5,369,596	+				-0.7
5,369,596	+				+0.1
5,369,598	+				-0.4
5,369,606	+				-0.9
5,369,606	+				+0.3
5,369,606	+				+1.1
5,369,613	+				+0.0
5,369,613	+				-0.7
5,369,613	+				+0.0
5,369,722	+				-0.0
5,369,724	+				-0.2
5,369,724	+				+0.5
5,369,724	+				+1.1
5,369,724	+				+0.3
5,369,724	+				+0.1
5,369,724	+				+1.1
5,369,724	+				-1.7
5,369,732	-				-0.8
5,369,732	-				+0.4
5,369,732	-				+0.7
5,369,732	-				-0.6
5,369,732	-				+0.5
5,369,768	-				+0.0
5,370,104	+				-1.3
5,370,135	-				-1.4
5,370,162	-				-0.3
5,370,172	+				-0.7
5,370,217	+				-0.9