Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5329 and GFF5330 are separated by 142 nucleotides GFF5330 and GFF5331 are separated by 74 nucleotides GFF5331 and GFF5332 are separated by 227 nucleotides GFF5332 and GFF5333 are separated by 213 nucleotides
GFF5329 - Dihydropteroate synthase (EC 2.5.1.15), at 5,321,590 to 5,322,453
GFF5329
GFF5330 - Mobile element protein, at 5,322,596 to 5,322,868
GFF5330
GFF5331 - hypothetical protein, at 5,322,943 to 5,323,260
GFF5331
GFF5332 - hypothetical protein, at 5,323,488 to 5,323,847
GFF5332
GFF5333 - sigma factor, at 5,324,061 to 5,324,567
GFF5333
Position (kb) 5322
5323
5324 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5321.943 kb on + strand, within GFF5329 at 5321.945 kb on + strand, within GFF5329 at 5321.951 kb on - strand, within GFF5329 at 5321.951 kb on - strand, within GFF5329 at 5321.955 kb on + strand, within GFF5329 at 5321.962 kb on + strand, within GFF5329 at 5321.962 kb on + strand, within GFF5329 at 5321.962 kb on + strand, within GFF5329 at 5321.968 kb on + strand, within GFF5329 at 5321.970 kb on - strand, within GFF5329 at 5321.970 kb on - strand, within GFF5329 at 5321.994 kb on - strand, within GFF5329 at 5321.994 kb on - strand, within GFF5329 at 5322.007 kb on - strand, within GFF5329 at 5322.010 kb on + strand, within GFF5329 at 5322.013 kb on + strand, within GFF5329 at 5322.013 kb on + strand, within GFF5329 at 5322.013 kb on + strand, within GFF5329 at 5322.031 kb on + strand, within GFF5329 at 5322.093 kb on + strand, within GFF5329 at 5322.152 kb on + strand, within GFF5329 at 5322.160 kb on - strand, within GFF5329 at 5322.160 kb on - strand, within GFF5329 at 5322.233 kb on + strand, within GFF5329 at 5322.241 kb on - strand, within GFF5329 at 5322.241 kb on - strand, within GFF5329 at 5322.251 kb on - strand, within GFF5329 at 5322.259 kb on - strand, within GFF5329 at 5322.275 kb on - strand, within GFF5329 at 5322.277 kb on - strand, within GFF5329 at 5322.312 kb on - strand, within GFF5329 at 5322.317 kb on + strand, within GFF5329 at 5322.317 kb on + strand, within GFF5329 at 5322.325 kb on - strand, within GFF5329 at 5322.356 kb on + strand, within GFF5329 at 5322.366 kb on + strand, within GFF5329 at 5322.392 kb on + strand at 5322.399 kb on + strand at 5322.399 kb on + strand at 5322.402 kb on - strand at 5322.419 kb on - strand at 5322.476 kb on + strand at 5322.484 kb on - strand at 5322.486 kb on - strand at 5322.499 kb on + strand at 5322.500 kb on + strand at 5322.506 kb on + strand at 5322.508 kb on - strand at 5322.516 kb on + strand at 5322.580 kb on - strand at 5322.580 kb on - strand at 5322.622 kb on - strand at 5322.795 kb on + strand, within GFF5330 at 5322.804 kb on + strand, within GFF5330 at 5322.812 kb on - strand, within GFF5330 at 5322.819 kb on - strand, within GFF5330 at 5322.821 kb on + strand, within GFF5330 at 5322.821 kb on + strand, within GFF5330 at 5322.824 kb on - strand, within GFF5330 at 5322.829 kb on - strand, within GFF5330 at 5322.836 kb on + strand, within GFF5330 at 5322.841 kb on + strand at 5322.849 kb on + strand at 5322.849 kb on + strand at 5322.849 kb on + strand at 5322.849 kb on + strand at 5322.849 kb on + strand at 5322.849 kb on - strand at 5322.854 kb on - strand at 5322.857 kb on - strand at 5322.857 kb on - strand at 5322.857 kb on - strand at 5322.873 kb on + strand at 5322.874 kb on - strand at 5322.881 kb on - strand at 5322.881 kb on - strand at 5322.899 kb on + strand at 5322.907 kb on + strand at 5322.907 kb on + strand at 5322.910 kb on - strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.914 kb on + strand at 5322.915 kb on - strand at 5322.915 kb on - strand at 5322.915 kb on - strand at 5322.922 kb on - strand at 5322.922 kb on - strand at 5322.922 kb on - strand at 5322.922 kb on - strand at 5322.922 kb on - strand at 5322.922 kb on - strand at 5322.927 kb on - strand at 5322.937 kb on - strand at 5322.954 kb on - strand at 5323.073 kb on + strand, within GFF5331 at 5323.078 kb on + strand, within GFF5331 at 5323.080 kb on + strand, within GFF5331 at 5323.087 kb on + strand, within GFF5331 at 5323.087 kb on + strand, within GFF5331 at 5323.116 kb on - strand, within GFF5331 at 5323.132 kb on - strand, within GFF5331 at 5323.415 kb on - strand at 5323.420 kb on - strand at 5323.431 kb on + strand at 5323.431 kb on + strand at 5323.439 kb on - strand at 5323.439 kb on - strand at 5323.441 kb on + strand at 5323.441 kb on + strand at 5323.441 kb on + strand at 5323.449 kb on - strand at 5323.449 kb on - strand at 5323.449 kb on - strand at 5323.449 kb on - strand at 5323.535 kb on + strand, within GFF5332 at 5323.553 kb on - strand, within GFF5332 at 5323.558 kb on + strand, within GFF5332 at 5323.566 kb on + strand, within GFF5332 at 5323.566 kb on - strand, within GFF5332 at 5323.566 kb on - strand, within GFF5332 at 5323.566 kb on - strand, within GFF5332 at 5323.571 kb on + strand, within GFF5332 at 5323.574 kb on - strand, within GFF5332 at 5323.579 kb on - strand, within GFF5332 at 5323.596 kb on - strand, within GFF5332 at 5323.613 kb on + strand, within GFF5332 at 5323.615 kb on + strand, within GFF5332 at 5323.615 kb on + strand, within GFF5332 at 5323.621 kb on - strand, within GFF5332 at 5323.621 kb on - strand, within GFF5332 at 5323.623 kb on - strand, within GFF5332 at 5323.628 kb on + strand, within GFF5332 at 5323.628 kb on - strand, within GFF5332 at 5323.637 kb on + strand, within GFF5332 at 5323.645 kb on - strand, within GFF5332 at 5323.645 kb on - strand, within GFF5332 at 5323.646 kb on - strand, within GFF5332 at 5323.647 kb on + strand, within GFF5332 at 5323.650 kb on - strand, within GFF5332 at 5323.657 kb on + strand, within GFF5332 at 5323.665 kb on - strand, within GFF5332 at 5323.665 kb on - strand, within GFF5332 at 5323.665 kb on - strand, within GFF5332 at 5323.665 kb on - strand, within GFF5332 at 5323.665 kb on - strand, within GFF5332 at 5323.668 kb on - strand, within GFF5332 at 5323.668 kb on - strand, within GFF5332 at 5323.674 kb on + strand, within GFF5332 at 5323.674 kb on + strand, within GFF5332 at 5323.679 kb on + strand, within GFF5332 at 5323.690 kb on + strand, within GFF5332 at 5323.704 kb on + strand, within GFF5332 at 5323.704 kb on + strand, within GFF5332 at 5323.704 kb on + strand, within GFF5332 at 5323.704 kb on + strand, within GFF5332 at 5323.712 kb on - strand, within GFF5332 at 5323.712 kb on - strand, within GFF5332 at 5323.712 kb on - strand, within GFF5332 at 5323.712 kb on - strand, within GFF5332 at 5323.753 kb on + strand, within GFF5332 at 5323.753 kb on + strand, within GFF5332 at 5323.753 kb on + strand, within GFF5332 at 5323.753 kb on + strand, within GFF5332 at 5323.753 kb on + strand, within GFF5332 at 5323.755 kb on + strand, within GFF5332 at 5323.778 kb on - strand, within GFF5332 at 5323.789 kb on + strand, within GFF5332 at 5323.789 kb on + strand, within GFF5332 at 5323.789 kb on + strand, within GFF5332 at 5323.795 kb on - strand, within GFF5332 at 5323.797 kb on - strand, within GFF5332 at 5323.797 kb on - strand, within GFF5332 at 5323.797 kb on - strand, within GFF5332 at 5323.803 kb on + strand, within GFF5332 at 5323.804 kb on + strand, within GFF5332 at 5323.804 kb on + strand, within GFF5332 at 5323.804 kb on + strand, within GFF5332 at 5323.810 kb on + strand, within GFF5332 at 5323.812 kb on - strand at 5323.818 kb on - strand at 5323.837 kb on - strand at 5323.838 kb on - strand at 5323.838 kb on - strand at 5323.838 kb on - strand at 5323.856 kb on - strand at 5323.856 kb on - strand at 5323.857 kb on - strand at 5323.865 kb on + strand at 5323.872 kb on + strand at 5323.884 kb on + strand at 5323.892 kb on - strand at 5323.892 kb on - strand at 5323.907 kb on - strand at 5323.914 kb on - strand at 5323.937 kb on + strand at 5323.939 kb on + strand at 5323.945 kb on - strand at 5323.997 kb on + strand at 5324.005 kb on + strand at 5324.036 kb on - strand at 5324.040 kb on + strand at 5324.040 kb on + strand at 5324.045 kb on + strand at 5324.045 kb on + strand at 5324.048 kb on - strand at 5324.048 kb on - strand at 5324.053 kb on + strand at 5324.053 kb on + strand at 5324.053 kb on - strand at 5324.054 kb on - strand at 5324.061 kb on - strand at 5324.061 kb on - strand at 5324.068 kb on + strand at 5324.076 kb on - strand at 5324.083 kb on - strand at 5324.087 kb on + strand at 5324.115 kb on - strand, within GFF5333 at 5324.116 kb on + strand, within GFF5333 at 5324.116 kb on + strand, within GFF5333 at 5324.117 kb on + strand, within GFF5333 at 5324.121 kb on + strand, within GFF5333 at 5324.121 kb on + strand, within GFF5333 at 5324.141 kb on + strand, within GFF5333 at 5324.148 kb on - strand, within GFF5333 at 5324.149 kb on + strand, within GFF5333 at 5324.151 kb on + strand, within GFF5333 at 5324.184 kb on + strand, within GFF5333 at 5324.184 kb on + strand, within GFF5333 at 5324.189 kb on + strand, within GFF5333 at 5324.191 kb on + strand, within GFF5333 at 5324.192 kb on - strand, within GFF5333 at 5324.192 kb on - strand, within GFF5333 at 5324.199 kb on + strand, within GFF5333 at 5324.199 kb on + strand, within GFF5333 at 5324.199 kb on - strand, within GFF5333 at 5324.205 kb on - strand, within GFF5333 at 5324.209 kb on + strand, within GFF5333 at 5324.211 kb on + strand, within GFF5333 at 5324.219 kb on - strand, within GFF5333 at 5324.219 kb on - strand, within GFF5333 at 5324.219 kb on - strand, within GFF5333 at 5324.221 kb on + strand, within GFF5333 at 5324.225 kb on + strand, within GFF5333 at 5324.225 kb on + strand, within GFF5333 at 5324.229 kb on - strand, within GFF5333 at 5324.233 kb on - strand, within GFF5333 at 5324.233 kb on - strand, within GFF5333 at 5324.254 kb on + strand, within GFF5333 at 5324.256 kb on + strand, within GFF5333 at 5324.258 kb on + strand, within GFF5333
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 5,321,943 + GFF5329 0.41 +0.0 5,321,945 + GFF5329 0.41 +0.7 5,321,951 - GFF5329 0.42 +0.1 5,321,951 - GFF5329 0.42 -0.4 5,321,955 + GFF5329 0.42 -0.5 5,321,962 + GFF5329 0.43 -1.0 5,321,962 + GFF5329 0.43 -0.7 5,321,962 + GFF5329 0.43 -1.3 5,321,968 + GFF5329 0.44 +1.5 5,321,970 - GFF5329 0.44 -1.7 5,321,970 - GFF5329 0.44 +0.0 5,321,994 - GFF5329 0.47 -0.7 5,321,994 - GFF5329 0.47 +0.1 5,322,007 - GFF5329 0.48 +1.3 5,322,010 + GFF5329 0.49 +0.4 5,322,013 + GFF5329 0.49 -1.1 5,322,013 + GFF5329 0.49 +0.8 5,322,013 + GFF5329 0.49 -0.2 5,322,031 + GFF5329 0.51 -0.9 5,322,093 + GFF5329 0.58 -0.3 5,322,152 + GFF5329 0.65 -0.7 5,322,160 - GFF5329 0.66 +1.6 5,322,160 - GFF5329 0.66 -1.8 5,322,233 + GFF5329 0.74 +1.3 5,322,241 - GFF5329 0.75 -0.2 5,322,241 - GFF5329 0.75 -0.1 5,322,251 - GFF5329 0.77 +0.3 5,322,259 - GFF5329 0.77 +0.9 5,322,275 - GFF5329 0.79 -0.9 5,322,277 - GFF5329 0.80 -0.1 5,322,312 - GFF5329 0.84 -1.1 5,322,317 + GFF5329 0.84 +1.1 5,322,317 + GFF5329 0.84 -0.3 5,322,325 - GFF5329 0.85 +0.9 5,322,356 + GFF5329 0.89 -1.4 5,322,366 + GFF5329 0.90 -1.9 5,322,392 + -1.2 5,322,399 + +0.8 5,322,399 + +0.5 5,322,402 - -1.2 5,322,419 - -0.4 5,322,476 + -1.3 5,322,484 - -1.3 5,322,486 - -1.2 5,322,499 + -0.4 5,322,500 + -0.5 5,322,506 + +0.5 5,322,508 - -0.3 5,322,516 + -0.3 5,322,580 - -1.7 5,322,580 - -0.7 5,322,622 - -0.9 5,322,795 + GFF5330 0.73 -0.5 5,322,804 + GFF5330 0.76 +0.0 5,322,812 - GFF5330 0.79 +1.8 5,322,819 - GFF5330 0.82 +0.0 5,322,821 + GFF5330 0.82 -1.4 5,322,821 + GFF5330 0.82 +0.1 5,322,824 - GFF5330 0.84 -0.5 5,322,829 - GFF5330 0.85 -0.9 5,322,836 + GFF5330 0.88 -1.4 5,322,841 + +0.3 5,322,849 + -0.2 5,322,849 + -1.3 5,322,849 + -0.4 5,322,849 + +0.4 5,322,849 + +0.7 5,322,849 - -1.1 5,322,854 - -0.6 5,322,857 - -1.0 5,322,857 - -0.7 5,322,857 - +0.2 5,322,873 + -1.0 5,322,874 - +0.9 5,322,881 - +0.1 5,322,881 - -1.6 5,322,899 + +1.7 5,322,907 + -0.2 5,322,907 + -1.0 5,322,910 - -0.5 5,322,914 + -0.7 5,322,914 + -1.8 5,322,914 + -1.5 5,322,914 + +0.5 5,322,914 + +0.2 5,322,914 + -1.0 5,322,914 + -1.3 5,322,914 + -1.2 5,322,914 + -0.9 5,322,914 + -1.3 5,322,914 + -0.4 5,322,915 - -0.5 5,322,915 - -0.7 5,322,915 - -1.3 5,322,922 - -2.1 5,322,922 - -1.3 5,322,922 - -0.2 5,322,922 - -1.7 5,322,922 - -0.7 5,322,922 - -2.0 5,322,927 - +1.0 5,322,937 - -1.7 5,322,954 - -0.7 5,323,073 + GFF5331 0.41 -1.1 5,323,078 + GFF5331 0.42 -0.4 5,323,080 + GFF5331 0.43 -0.8 5,323,087 + GFF5331 0.45 -0.5 5,323,087 + GFF5331 0.45 -0.4 5,323,116 - GFF5331 0.54 -1.6 5,323,132 - GFF5331 0.59 -1.0 5,323,415 - -1.4 5,323,420 - -2.0 5,323,431 + -2.1 5,323,431 + -0.1 5,323,439 - -2.2 5,323,439 - -1.1 5,323,441 + -2.2 5,323,441 + -2.5 5,323,441 + -0.5 5,323,449 - -2.9 5,323,449 - +0.4 5,323,449 - -1.7 5,323,449 - -1.0 5,323,535 + GFF5332 0.13 +0.8 5,323,553 - GFF5332 0.18 -0.9 5,323,558 + GFF5332 0.19 -1.4 5,323,566 + GFF5332 0.22 -2.9 5,323,566 - GFF5332 0.22 +0.4 5,323,566 - GFF5332 0.22 -2.1 5,323,566 - GFF5332 0.22 -1.1 5,323,571 + GFF5332 0.23 -2.3 5,323,574 - GFF5332 0.24 -0.7 5,323,579 - GFF5332 0.25 +0.3 5,323,596 - GFF5332 0.30 -0.2 5,323,613 + GFF5332 0.35 -1.4 5,323,615 + GFF5332 0.35 -0.7 5,323,615 + GFF5332 0.35 -1.3 5,323,621 - GFF5332 0.37 -0.5 5,323,621 - GFF5332 0.37 -1.4 5,323,623 - GFF5332 0.38 -0.8 5,323,628 + GFF5332 0.39 -1.4 5,323,628 - GFF5332 0.39 +0.5 5,323,637 + GFF5332 0.41 -0.0 5,323,645 - GFF5332 0.44 +0.8 5,323,645 - GFF5332 0.44 -1.7 5,323,646 - GFF5332 0.44 -0.8 5,323,647 + GFF5332 0.44 -0.3 5,323,650 - GFF5332 0.45 -0.4 5,323,657 + GFF5332 0.47 -2.3 5,323,665 - GFF5332 0.49 +0.5 5,323,665 - GFF5332 0.49 -0.7 5,323,665 - GFF5332 0.49 -1.2 5,323,665 - GFF5332 0.49 -0.4 5,323,665 - GFF5332 0.49 -2.8 5,323,668 - GFF5332 0.50 -1.4 5,323,668 - GFF5332 0.50 +0.1 5,323,674 + GFF5332 0.52 -1.1 5,323,674 + GFF5332 0.52 -0.2 5,323,679 + GFF5332 0.53 -1.1 5,323,690 + GFF5332 0.56 -1.9 5,323,704 + GFF5332 0.60 +1.1 5,323,704 + GFF5332 0.60 -2.8 5,323,704 + GFF5332 0.60 +0.5 5,323,704 + GFF5332 0.60 -0.7 5,323,712 - GFF5332 0.62 -1.5 5,323,712 - GFF5332 0.62 +0.0 5,323,712 - GFF5332 0.62 -0.5 5,323,712 - GFF5332 0.62 -1.7 5,323,753 + GFF5332 0.74 +0.2 5,323,753 + GFF5332 0.74 -1.4 5,323,753 + GFF5332 0.74 +0.6 5,323,753 + GFF5332 0.74 -0.4 5,323,753 + GFF5332 0.74 +0.2 5,323,755 + GFF5332 0.74 -1.7 5,323,778 - GFF5332 0.81 -0.0 5,323,789 + GFF5332 0.84 -1.2 5,323,789 + GFF5332 0.84 -1.4 5,323,789 + GFF5332 0.84 -0.4 5,323,795 - GFF5332 0.85 -0.0 5,323,797 - GFF5332 0.86 -0.4 5,323,797 - GFF5332 0.86 -0.1 5,323,797 - GFF5332 0.86 +1.0 5,323,803 + GFF5332 0.88 -0.9 5,323,804 + GFF5332 0.88 -0.7 5,323,804 + GFF5332 0.88 -0.7 5,323,804 + GFF5332 0.88 -1.8 5,323,810 + GFF5332 0.89 -1.5 5,323,812 - -1.2 5,323,818 - +0.4 5,323,837 - -2.2 5,323,838 - -1.0 5,323,838 - -1.7 5,323,838 - +0.3 5,323,856 - -1.8 5,323,856 - -1.2 5,323,857 - -1.2 5,323,865 + -1.7 5,323,872 + -1.0 5,323,884 + -0.2 5,323,892 - -0.7 5,323,892 - -1.1 5,323,907 - -0.5 5,323,914 - -0.6 5,323,937 + -1.0 5,323,939 + -2.7 5,323,945 - -0.4 5,323,997 + -1.2 5,324,005 + -0.8 5,324,036 - +0.1 5,324,040 + -0.8 5,324,040 + -0.4 5,324,045 + -0.9 5,324,045 + -1.0 5,324,048 - -1.4 5,324,048 - -2.4 5,324,053 + -2.2 5,324,053 + +0.1 5,324,053 - -0.3 5,324,054 - -1.2 5,324,061 - -1.9 5,324,061 - -1.0 5,324,068 + +0.3 5,324,076 - -1.2 5,324,083 - -0.3 5,324,087 + -0.4 5,324,115 - GFF5333 0.11 -0.8 5,324,116 + GFF5333 0.11 -1.0 5,324,116 + GFF5333 0.11 +0.1 5,324,117 + GFF5333 0.11 +0.1 5,324,121 + GFF5333 0.12 -1.0 5,324,121 + GFF5333 0.12 -0.2 5,324,141 + GFF5333 0.16 -0.2 5,324,148 - GFF5333 0.17 +0.3 5,324,149 + GFF5333 0.17 -0.4 5,324,151 + GFF5333 0.18 -1.3 5,324,184 + GFF5333 0.24 -2.7 5,324,184 + GFF5333 0.24 -0.4 5,324,189 + GFF5333 0.25 -0.2 5,324,191 + GFF5333 0.26 -1.0 5,324,192 - GFF5333 0.26 -2.1 5,324,192 - GFF5333 0.26 -2.1 5,324,199 + GFF5333 0.27 -0.0 5,324,199 + GFF5333 0.27 -0.3 5,324,199 - GFF5333 0.27 -0.6 5,324,205 - GFF5333 0.28 -0.7 5,324,209 + GFF5333 0.29 -1.0 5,324,211 + GFF5333 0.30 -1.0 5,324,219 - GFF5333 0.31 +0.3 5,324,219 - GFF5333 0.31 -1.0 5,324,219 - GFF5333 0.31 -1.2 5,324,221 + GFF5333 0.32 -2.0 5,324,225 + GFF5333 0.32 -2.3 5,324,225 + GFF5333 0.32 -2.2 5,324,229 - GFF5333 0.33 -1.9 5,324,233 - GFF5333 0.34 -0.7 5,324,233 - GFF5333 0.34 -0.6 5,324,254 + GFF5333 0.38 +0.3 5,324,256 + GFF5333 0.38 -0.4 5,324,258 + GFF5333 0.39 +0.1
Or see this region's nucleotide sequence